RPL13A | OmnibusX

I. Expression across cell types

Name	Number of supported studies	Average coverage
B cell	51 studies	88% ± 20%	Explore
macrophage	45 studies	77% ± 24%	Explore
endothelial cell	45 studies	73% ± 28%	Explore
natural killer cell	44 studies	86% ± 20%	Explore
fibroblast	43 studies	79% ± 29%	Explore
T cell	42 studies	80% ± 25%	Explore
CD8-positive, alpha-beta T cell	39 studies	87% ± 19%	Explore
pericyte	37 studies	79% ± 27%	Explore
CD4-positive, alpha-beta T cell	36 studies	92% ± 14%	Explore
plasmacytoid dendritic cell	32 studies	89% ± 17%	Explore
smooth muscle cell	31 studies	78% ± 30%	Explore
conventional dendritic cell	31 studies	91% ± 13%	Explore
dendritic cell	29 studies	86% ± 19%	Explore
plasma cell	27 studies	82% ± 23%	Explore
classical monocyte	27 studies	83% ± 20%	Explore
epithelial cell	27 studies	81% ± 26%	Explore
endothelial cell of lymphatic vessel	26 studies	83% ± 24%	Explore
regulatory T cell	26 studies	92% ± 14%	Explore
monocyte	25 studies	78% ± 24%	Explore
mature NK T cell	24 studies	84% ± 20%	Explore
non-classical monocyte	24 studies	87% ± 15%	Explore
mast cell	22 studies	82% ± 19%	Explore
basal cell	22 studies	86% ± 21%	Explore
gamma-delta T cell	21 studies	92% ± 15%	Explore
memory B cell	21 studies	96% ± 8%	Explore
connective tissue cell	20 studies	85% ± 25%	Explore
naive B cell	19 studies	89% ± 22%	Explore
ciliated cell	17 studies	79% ± 21%	Explore
mucosal invariant T cell	17 studies	91% ± 16%	Explore
capillary endothelial cell	17 studies	74% ± 20%	Explore
naive thymus-derived CD4-positive, alpha-beta T cell	16 studies	93% ± 14%	Explore
endothelial cell of artery	16 studies	78% ± 18%	Explore
CD16-negative, CD56-bright natural killer cell, human	15 studies	86% ± 18%	Explore
CD16-positive, CD56-dim natural killer cell, human	15 studies	86% ± 12%	Explore
microglial cell	15 studies	57% ± 31%	Explore
vein endothelial cell	15 studies	82% ± 21%	Explore
myeloid cell	15 studies	74% ± 28%	Explore
naive thymus-derived CD8-positive, alpha-beta T cell	14 studies	95% ± 10%	Explore
myofibroblast cell	14 studies	90% ± 18%	Explore
CD8-positive, alpha-beta memory T cell	13 studies	90% ± 14%	Explore
astrocyte	13 studies	44% ± 25%	Explore
effector memory CD8-positive, alpha-beta T cell	12 studies	84% ± 23%	Explore
innate lymphoid cell	12 studies	91% ± 18%	Explore
plasmablast	12 studies	90% ± 12%	Explore
CD4-positive, alpha-beta memory T cell	12 studies	91% ± 11%	Explore
secretory cell	12 studies	89% ± 15%	Explore
goblet cell	12 studies	85% ± 23%	Explore
mesothelial cell	12 studies	86% ± 16%	Explore
endothelial cell of vascular tree	12 studies	87% ± 23%	Explore
erythrocyte	12 studies	64% ± 23%	Explore
neutrophil	11 studies	62% ± 27%	Explore
progenitor cell	11 studies	88% ± 21%	Explore
leukocyte	11 studies	85% ± 20%	Explore
type I pneumocyte	10 studies	70% ± 27%	Explore
type II pneumocyte	10 studies	75% ± 28%	Explore
glutamatergic neuron	10 studies	30% ± 12%	Explore
IgG plasma cell	10 studies	81% ± 20%	Explore
club cell	9 studies	79% ± 26%	Explore
oligodendrocyte	9 studies	31% ± 11%	Explore
oligodendrocyte precursor cell	9 studies	37% ± 24%	Explore
neuron	9 studies	68% ± 21%	Explore
IgA plasma cell	9 studies	76% ± 22%	Explore
T follicular helper cell	9 studies	94% ± 8%	Explore
hematopoietic stem cell	9 studies	90% ± 23%	Explore
respiratory goblet cell	8 studies	70% ± 23%	Explore
platelet	8 studies	53% ± 23%	Explore
abnormal cell	8 studies	75% ± 30%	Explore
enterocyte	8 studies	85% ± 18%	Explore
GABAergic neuron	8 studies	27% ± 12%	Explore
alveolar macrophage	7 studies	73% ± 30%	Explore
mononuclear phagocyte	7 studies	88% ± 20%	Explore
epithelial cell of proximal tubule	7 studies	81% ± 18%	Explore
enteroendocrine cell	7 studies	94% ± 6%	Explore
transit amplifying cell	7 studies	79% ± 30%	Explore
retinal rod cell	7 studies	64% ± 19%	Explore
precursor B cell	7 studies	84% ± 28%	Explore
hematopoietic precursor cell	6 studies	80% ± 26%	Explore
ionocyte	6 studies	81% ± 16%	Explore
kidney loop of Henle epithelial cell	6 studies	81% ± 18%	Explore
renal alpha-intercalated cell	6 studies	96% ± 6%	Explore
megakaryocyte	6 studies	69% ± 29%	Explore
erythroblast	6 studies	78% ± 23%	Explore
intestinal crypt stem cell	6 studies	73% ± 37%	Explore
amacrine cell	6 studies	66% ± 18%	Explore
retinal ganglion cell	6 studies	71% ± 19%	Explore
retinal cone cell	6 studies	65% ± 27%	Explore
lymphocyte	6 studies	72% ± 35%	Explore
brush cell	6 studies	92% ± 10%	Explore
glial cell	6 studies	76% ± 25%	Explore
immature B cell	6 studies	98% ± 2%	Explore
effector memory CD4-positive, alpha-beta T cell	6 studies	96% ± 7%	Explore
effector CD8-positive, alpha-beta T cell	6 studies	93% ± 10%	Explore
CD4-positive helper T cell	5 studies	89% ± 16%	Explore
central memory CD8-positive, alpha-beta T cell	5 studies	87% ± 23%	Explore
effector memory CD8-positive, alpha-beta T cell, terminally differentiated	5 studies	80% ± 26%	Explore
kidney distal convoluted tubule epithelial cell	5 studies	91% ± 10%	Explore
OFF-bipolar cell	5 studies	79% ± 17%	Explore
ON-bipolar cell	5 studies	77% ± 17%	Explore
pro-B cell	5 studies	80% ± 32%	Explore
T-helper 17 cell	5 studies	99% ± 1%	Explore
group 3 innate lymphoid cell	5 studies	95% ± 3%	Explore
Mueller cell	5 studies	77% ± 11%	Explore
double negative thymocyte	5 studies	97% ± 2%	Explore
effector CD4-positive, alpha-beta T cell	5 studies	98% ± 2%	Explore
granulocyte	5 studies	95% ± 7%	Explore
intermediate monocyte	5 studies	88% ± 9%	Explore
melanocyte	5 studies	71% ± 30%	Explore
interneuron	5 studies	51% ± 24%	Explore
CD4-positive, alpha-beta cytotoxic T cell	4 studies	70% ± 28%	Explore
deuterosomal cell	4 studies	76% ± 20%	Explore
duct epithelial cell	4 studies	94% ± 9%	Explore
exhausted T cell	4 studies	89% ± 11%	Explore
precursor cell	4 studies	87% ± 12%	Explore
pancreatic A cell	4 studies	90% ± 13%	Explore
type B pancreatic cell	4 studies	88% ± 15%	Explore
glomerular endothelial cell	4 studies	82% ± 18%	Explore
kidney connecting tubule epithelial cell	4 studies	89% ± 12%	Explore
podocyte	4 studies	85% ± 20%	Explore
paneth cell	4 studies	96% ± 4%	Explore
GABAergic amacrine cell	4 studies	69% ± 14%	Explore
glycinergic amacrine cell	4 studies	68% ± 18%	Explore
neuroendocrine cell	4 studies	94% ± 6%	Explore
adventitial cell	4 studies	88% ± 14%	Explore
mucus secreting cell	4 studies	81% ± 32%	Explore
adipocyte	4 studies	25% ± 7%	Explore
retina horizontal cell	4 studies	70% ± 8%	Explore
inflammatory macrophage	4 studies	83% ± 15%	Explore
acinar cell	4 studies	82% ± 25%	Explore
muscle cell	4 studies	53% ± 21%	Explore
germinal center B cell	4 studies	97% ± 3%	Explore
luminal hormone-sensing cell of mammary gland	4 studies	95% ± 4%	Explore
hepatocyte	4 studies	67% ± 29%	Explore
IgM plasma cell	4 studies	93% ± 5%	Explore
T-helper 1 cell	4 studies	99% ± 2%	Explore
squamous epithelial cell	3 studies	60% ± 23%	Explore
pancreatic D cell	3 studies	96% ± 4%	Explore
renal beta-intercalated cell	3 studies	100% ± 0%	Explore
neural crest cell	3 studies	100% ± 0%	Explore
retinal bipolar neuron	3 studies	73% ± 18%	Explore
renal principal cell	3 studies	80% ± 12%	Explore
thymocyte	3 studies	100% ± 0%	Explore
extravillous trophoblast	3 studies	100% ± 0%	Explore
placental villous trophoblast	3 studies	100% ± 0%	Explore
Schwann cell	3 studies	67% ± 35%	Explore
serous secreting cell	3 studies	89% ± 10%	Explore
tissue-resident macrophage	3 studies	76% ± 27%	Explore
follicular B cell	3 studies	100% ± 0%	Explore
intraepithelial lymphocyte	3 studies	97% ± 2%	Explore
rod bipolar cell	3 studies	84% ± 7%	Explore
chondrocyte	3 studies	59% ± 28%	Explore
endothelial cell of sinusoid	3 studies	65% ± 29%	Explore
myoepithelial cell	3 studies	96% ± 6%	Explore
cholangiocyte	3 studies	54% ± 31%	Explore
luminal cell of prostate epithelium	3 studies	100% ± 0%	Explore
retinal pigment epithelial cell	3 studies	46% ± 18%	Explore
pancreatic ductal cell	3 studies	87% ± 10%	Explore
granulocyte monocyte progenitor cell	3 studies	82% ± 23%	Explore
megakaryocyte-erythroid progenitor cell	3 studies	100% ± 0%	Explore
keratinocyte	3 studies	98% ± 2%	Explore
central memory CD4-positive, alpha-beta T cell	3 studies	96% ± 3%	Explore
double-positive, alpha-beta thymocyte	3 studies	97% ± 2%	Explore
progenitor cell of mammary luminal epithelium	3 studies	91% ± 10%	Explore
mural cell	3 studies	51% ± 1%	Explore

II. Expression across tissues

Name	Number of supported studies	Average coverage
lung	19 studies	81% ± 20%	Explore
peripheral blood	19 studies	86% ± 17%	Explore
brain	16 studies	36% ± 19%	Explore
intestine	13 studies	90% ± 16%	Explore
eye	10 studies	71% ± 20%	Explore
kidney	8 studies	79% ± 21%	Explore
liver	7 studies	68% ± 26%	Explore
bone marrow	7 studies	72% ± 33%	Explore
pancreas	5 studies	83% ± 18%	Explore
uterus	5 studies	92% ± 12%	Explore
lymph node	4 studies	96% ± 3%	Explore
placenta	4 studies	87% ± 21%	Explore
heart	4 studies	47% ± 20%	Explore
adipose	4 studies	44% ± 27%	Explore
esophagus	4 studies	78% ± 24%	Explore
prostate	4 studies	90% ± 17%	Explore
breast	4 studies	88% ± 8%	Explore
skin	3 studies	78% ± 25%	Explore
stomach	3 studies	63% ± 24%	Explore
thymus	3 studies	80% ± 26%	Explore

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
esophagus	100%	99335.94	1445 / 1445	100%	934.33	183 / 183
ovary	100%	213691.74	180 / 180	100%	1840.81	430 / 430
pancreas	100%	118386.49	328 / 328	100%	1584.45	178 / 178
thymus	100%	89892.51	653 / 653	100%	1941.87	605 / 605
uterus	100%	118190.43	170 / 170	100%	1779.17	459 / 459
skin	100%	146749.34	1808 / 1809	100%	1627.55	472 / 472
prostate	100%	114550.42	245 / 245	100%	2998.56	501 / 502
stomach	100%	85845.28	359 / 359	100%	1540.87	285 / 286
intestine	100%	100917.10	966 / 966	100%	1960.57	525 / 527
breast	100%	120849.81	459 / 459	99%	1583.55	1110 / 1118
liver	100%	45356.32	226 / 226	99%	1072.46	403 / 406
bladder	100%	105879.19	21 / 21	99%	1848.64	500 / 504
kidney	100%	72418.54	89 / 89	99%	1107.48	893 / 901
lung	100%	78036.90	576 / 578	99%	1328.32	1147 / 1155
adrenal gland	100%	104162.10	258 / 258	98%	1134.94	226 / 230
brain	99%	36951.45	2604 / 2642	99%	1090.50	701 / 705
adipose	100%	105569.64	1204 / 1204	0%	0	0 / 0
eye	0%	0	0 / 0	100%	3167.94	80 / 80
lymph node	0%	0	0 / 0	100%	3771.56	29 / 29
spleen	100%	118368.61	241 / 241	0%	0	0 / 0
tonsil	0%	0	0 / 0	100%	1505.96	45 / 45
ureter	0%	0	0 / 0	100%	1279.80	1 / 1
blood vessel	100%	84371.66	1334 / 1335	0%	0	0 / 0
muscle	99%	67254.07	798 / 803	0%	0	0 / 0
heart	98%	47379.76	842 / 861	0%	0	0 / 0
peripheral blood	97%	84369.32	898 / 929	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0

III. Associated gene sets

GO_0006412	Biological process	translation
GO_0002181	Biological process	cytoplasmic translation
GO_0032496	Biological process	response to lipopolysaccharide
GO_0060425	Biological process	lung morphogenesis
GO_0042592	Biological process	homeostatic process
GO_1901194	Biological process	negative regulation of formation of translation preinitiation complex
GO_0017148	Biological process	negative regulation of translation
GO_0048246	Biological process	macrophage chemotaxis
GO_0071346	Biological process	cellular response to type II interferon
GO_0015934	Cellular component	large ribosomal subunit
GO_0005730	Cellular component	nucleolus
GO_0097452	Cellular component	GAIT complex
GO_0022626	Cellular component	cytosolic ribosome
GO_0005840	Cellular component	ribosome
GO_0016020	Cellular component	membrane
GO_0022625	Cellular component	cytosolic large ribosomal subunit
GO_0005925	Cellular component	focal adhesion
GO_0005829	Cellular component	cytosol
GO_0045202	Cellular component	synapse
GO_0005737	Cellular component	cytoplasm
GO_1990904	Cellular component	ribonucleoprotein complex
GO_0005634	Cellular component	nucleus
GO_0003729	Molecular function	mRNA binding
GO_0003735	Molecular function	structural constituent of ribosome
GO_0003723	Molecular function	RNA binding

IV. Literature review

[source]

Gene name	RPL13A
Protein name	Ribosomal protein L13a Large ribosomal subunit protein uL13 (23 kDa highly basic protein) (60S ribosomal protein L13a) Large ribosomal subunit protein uL13 (60S ribosomal protein L13a)
Synonyms	hCG_1998057 RPL13a
Description	FUNCTION: Associated with ribosomes but is not required for canonical ribosome function and has extra-ribosomal functions . Component of the GAIT (gamma interferon-activated inhibitor of translation) complex which mediates interferon-gamma-induced transcript-selective translation inhibition in inflammation processes . Upon interferon-gamma activation and subsequent phosphorylation dissociates from the ribosome and assembles into the GAIT complex which binds to stem loop-containing GAIT elements in the 3'-UTR of diverse inflammatory mRNAs (such as ceruplasmin) and suppresses their translation . In the GAIT complex interacts with m7G cap-bound eIF4G at or near the eIF3-binding site and blocks the recruitment of the 43S ribosomal complex . Involved in methylation of rRNA . .
Accessions	Q9BSQ6 A0A096LPE0 Q0VGL3 M0QZU1 M0QYS1 ENST00000678713.1 A0A7I2V376 P40429 ENST00000621674.4 ENST00000391857.9 ENST00000624069.3 ENST00000679106.1 ENST00000484279.5 A0A7I2V5L3 ENST00000467825.2 A0A7I2V2L9 Q8J015 ENST00000678510.1

RPL13A report

I. Expression across cell types

II. Expression across tissues

III. Associated gene sets

IV. Literature review