RPL13 | OmnibusX

I. Expression across cell types

Name	Number of supported studies	Average coverage
B cell	51 studies	92% ± 19%	Explore
endothelial cell	48 studies	76% ± 27%	Explore
macrophage	46 studies	83% ± 23%	Explore
natural killer cell	45 studies	91% ± 17%	Explore
fibroblast	43 studies	83% ± 26%	Explore
T cell	42 studies	87% ± 22%	Explore
CD8-positive, alpha-beta T cell	40 studies	91% ± 18%	Explore
pericyte	39 studies	80% ± 28%	Explore
CD4-positive, alpha-beta T cell	37 studies	92% ± 17%	Explore
smooth muscle cell	33 studies	79% ± 29%	Explore
conventional dendritic cell	31 studies	97% ± 5%	Explore
plasmacytoid dendritic cell	31 studies	97% ± 6%	Explore
endothelial cell of lymphatic vessel	29 studies	82% ± 26%	Explore
dendritic cell	28 studies	91% ± 16%	Explore
plasma cell	28 studies	86% ± 21%	Explore
regulatory T cell	27 studies	95% ± 13%	Explore
epithelial cell	27 studies	85% ± 23%	Explore
monocyte	26 studies	85% ± 21%	Explore
classical monocyte	26 studies	93% ± 11%	Explore
mast cell	25 studies	85% ± 22%	Explore
mature NK T cell	25 studies	90% ± 17%	Explore
non-classical monocyte	25 studies	94% ± 11%	Explore
basal cell	22 studies	89% ± 20%	Explore
gamma-delta T cell	21 studies	97% ± 5%	Explore
memory B cell	21 studies	99% ± 3%	Explore
connective tissue cell	20 studies	89% ± 20%	Explore
naive B cell	18 studies	98% ± 4%	Explore
ciliated cell	17 studies	83% ± 19%	Explore
mucosal invariant T cell	17 studies	97% ± 8%	Explore
naive thymus-derived CD4-positive, alpha-beta T cell	17 studies	92% ± 20%	Explore
capillary endothelial cell	17 studies	80% ± 17%	Explore
microglial cell	17 studies	59% ± 28%	Explore
endothelial cell of artery	16 studies	88% ± 12%	Explore
CD16-negative, CD56-bright natural killer cell, human	15 studies	93% ± 13%	Explore
CD16-positive, CD56-dim natural killer cell, human	15 studies	92% ± 14%	Explore
vein endothelial cell	15 studies	87% ± 19%	Explore
myeloid cell	15 studies	81% ± 26%	Explore
naive thymus-derived CD8-positive, alpha-beta T cell	14 studies	99% ± 2%	Explore
CD8-positive, alpha-beta memory T cell	14 studies	90% ± 20%	Explore
neutrophil	14 studies	64% ± 29%	Explore
astrocyte	14 studies	47% ± 22%	Explore
oligodendrocyte precursor cell	14 studies	50% ± 24%	Explore
myofibroblast cell	14 studies	94% ± 13%	Explore
innate lymphoid cell	13 studies	93% ± 18%	Explore
erythrocyte	13 studies	74% ± 23%	Explore
mesothelial cell	13 studies	84% ± 21%	Explore
endothelial cell of vascular tree	13 studies	84% ± 25%	Explore
effector memory CD8-positive, alpha-beta T cell	12 studies	90% ± 18%	Explore
plasmablast	12 studies	97% ± 5%	Explore
CD4-positive, alpha-beta memory T cell	12 studies	96% ± 6%	Explore
secretory cell	12 studies	93% ± 11%	Explore
oligodendrocyte	12 studies	36% ± 16%	Explore
progenitor cell	12 studies	81% ± 30%	Explore
goblet cell	12 studies	84% ± 23%	Explore
leukocyte	11 studies	90% ± 14%	Explore
type I pneumocyte	10 studies	75% ± 25%	Explore
type II pneumocyte	10 studies	82% ± 24%	Explore
T follicular helper cell	10 studies	99% ± 1%	Explore
glutamatergic neuron	10 studies	39% ± 18%	Explore
neuron	10 studies	69% ± 26%	Explore
IgG plasma cell	10 studies	89% ± 16%	Explore
club cell	9 studies	85% ± 22%	Explore
GABAergic neuron	9 studies	35% ± 18%	Explore
IgA plasma cell	9 studies	86% ± 19%	Explore
hematopoietic stem cell	9 studies	94% ± 17%	Explore
respiratory goblet cell	8 studies	76% ± 26%	Explore
platelet	8 studies	68% ± 20%	Explore
abnormal cell	8 studies	85% ± 25%	Explore
enterocyte	8 studies	82% ± 18%	Explore
alveolar macrophage	7 studies	79% ± 29%	Explore
mononuclear phagocyte	7 studies	89% ± 20%	Explore
epithelial cell of proximal tubule	7 studies	85% ± 20%	Explore
enteroendocrine cell	7 studies	95% ± 5%	Explore
transit amplifying cell	7 studies	81% ± 28%	Explore
retinal rod cell	7 studies	66% ± 23%	Explore
adipocyte	7 studies	29% ± 6%	Explore
CD4-positive helper T cell	6 studies	86% ± 25%	Explore
effector memory CD8-positive, alpha-beta T cell, terminally differentiated	6 studies	82% ± 30%	Explore
hematopoietic precursor cell	6 studies	82% ± 29%	Explore
ionocyte	6 studies	85% ± 18%	Explore
kidney loop of Henle epithelial cell	6 studies	90% ± 14%	Explore
renal alpha-intercalated cell	6 studies	99% ± 0%	Explore
erythroblast	6 studies	80% ± 22%	Explore
intestinal crypt stem cell	6 studies	76% ± 33%	Explore
amacrine cell	6 studies	63% ± 21%	Explore
retinal ganglion cell	6 studies	74% ± 18%	Explore
retinal cone cell	6 studies	62% ± 30%	Explore
lymphocyte	6 studies	78% ± 31%	Explore
precursor B cell	6 studies	98% ± 2%	Explore
brush cell	6 studies	95% ± 5%	Explore
glial cell	6 studies	78% ± 25%	Explore
immature B cell	6 studies	98% ± 5%	Explore
melanocyte	6 studies	74% ± 27%	Explore
effector memory CD4-positive, alpha-beta T cell	6 studies	99% ± 1%	Explore
effector CD8-positive, alpha-beta T cell	6 studies	94% ± 13%	Explore
central memory CD8-positive, alpha-beta T cell	5 studies	98% ± 3%	Explore
kidney distal convoluted tubule epithelial cell	5 studies	98% ± 1%	Explore
megakaryocyte	5 studies	86% ± 17%	Explore
OFF-bipolar cell	5 studies	78% ± 23%	Explore
ON-bipolar cell	5 studies	76% ± 22%	Explore
T-helper 17 cell	5 studies	100% ± 1%	Explore
group 3 innate lymphoid cell	5 studies	99% ± 1%	Explore
Mueller cell	5 studies	75% ± 16%	Explore
double negative thymocyte	5 studies	99% ± 1%	Explore
effector CD4-positive, alpha-beta T cell	5 studies	99% ± 1%	Explore
granulocyte	5 studies	98% ± 2%	Explore
intermediate monocyte	5 studies	93% ± 8%	Explore
interneuron	5 studies	56% ± 25%	Explore
CD4-positive, alpha-beta cytotoxic T cell	4 studies	88% ± 16%	Explore
deuterosomal cell	4 studies	82% ± 23%	Explore
duct epithelial cell	4 studies	99% ± 1%	Explore
exhausted T cell	4 studies	97% ± 4%	Explore
precursor cell	4 studies	89% ± 16%	Explore
pancreatic A cell	4 studies	93% ± 12%	Explore
type B pancreatic cell	4 studies	92% ± 11%	Explore
cholangiocyte	4 studies	50% ± 30%	Explore
endothelial cell of sinusoid	4 studies	57% ± 26%	Explore
glomerular endothelial cell	4 studies	89% ± 9%	Explore
kidney connecting tubule epithelial cell	4 studies	95% ± 4%	Explore
podocyte	4 studies	90% ± 8%	Explore
paneth cell	4 studies	99% ± 2%	Explore
retinal bipolar neuron	4 studies	57% ± 29%	Explore
GABAergic amacrine cell	4 studies	63% ± 17%	Explore
glycinergic amacrine cell	4 studies	63% ± 19%	Explore
pro-B cell	4 studies	98% ± 1%	Explore
neuroendocrine cell	4 studies	97% ± 3%	Explore
Schwann cell	4 studies	65% ± 33%	Explore
chondrocyte	4 studies	80% ± 18%	Explore
adventitial cell	4 studies	91% ± 13%	Explore
mucus secreting cell	4 studies	82% ± 30%	Explore
retina horizontal cell	4 studies	63% ± 17%	Explore
inflammatory macrophage	4 studies	85% ± 14%	Explore
acinar cell	4 studies	82% ± 19%	Explore
muscle cell	4 studies	59% ± 18%	Explore
germinal center B cell	4 studies	100% ± 0%	Explore
luminal hormone-sensing cell of mammary gland	4 studies	98% ± 4%	Explore
hepatocyte	4 studies	74% ± 24%	Explore
IgM plasma cell	4 studies	96% ± 4%	Explore
T-helper 1 cell	4 studies	100% ± 0%	Explore
squamous epithelial cell	3 studies	64% ± 24%	Explore
pancreatic D cell	3 studies	98% ± 2%	Explore
hepatic stellate cell	3 studies	42% ± 21%	Explore
renal beta-intercalated cell	3 studies	100% ± 0%	Explore
neural crest cell	3 studies	100% ± 0%	Explore
renal principal cell	3 studies	95% ± 1%	Explore
thymocyte	3 studies	100% ± 0%	Explore
extravillous trophoblast	3 studies	100% ± 0%	Explore
placental villous trophoblast	3 studies	100% ± 0%	Explore
serous secreting cell	3 studies	90% ± 9%	Explore
tissue-resident macrophage	3 studies	77% ± 27%	Explore
follicular B cell	3 studies	100% ± 0%	Explore
intraepithelial lymphocyte	3 studies	99% ± 1%	Explore
rod bipolar cell	3 studies	84% ± 12%	Explore
myoepithelial cell	3 studies	100% ± 0%	Explore
luminal cell of prostate epithelium	3 studies	100% ± 0%	Explore
retinal pigment epithelial cell	3 studies	61% ± 15%	Explore
pancreatic ductal cell	3 studies	92% ± 8%	Explore
granulocyte monocyte progenitor cell	3 studies	80% ± 27%	Explore
megakaryocyte-erythroid progenitor cell	3 studies	100% ± 0%	Explore
keratinocyte	3 studies	99% ± 2%	Explore
central memory CD4-positive, alpha-beta T cell	3 studies	99% ± 1%	Explore
double-positive, alpha-beta thymocyte	3 studies	99% ± 0%	Explore
progenitor cell of mammary luminal epithelium	3 studies	100% ± 0%	Explore
mural cell	3 studies	62% ± 8%	Explore

II. Expression across tissues

Name	Number of supported studies	Average coverage
lung	19 studies	86% ± 17%	Explore
peripheral blood	19 studies	92% ± 15%	Explore
brain	17 studies	45% ± 21%	Explore
intestine	13 studies	91% ± 15%	Explore
eye	10 studies	72% ± 18%	Explore
kidney	8 studies	85% ± 18%	Explore
liver	7 studies	73% ± 21%	Explore
bone marrow	6 studies	90% ± 12%	Explore
pancreas	5 studies	85% ± 18%	Explore
placenta	5 studies	76% ± 32%	Explore
heart	5 studies	43% ± 20%	Explore
uterus	5 studies	94% ± 11%	Explore
lymph node	4 studies	100% ± 1%	Explore
skin	4 studies	63% ± 36%	Explore
adipose	4 studies	53% ± 27%	Explore
esophagus	4 studies	81% ± 20%	Explore
prostate	4 studies	90% ± 17%	Explore
breast	4 studies	97% ± 3%	Explore
stomach	3 studies	75% ± 19%	Explore
thymus	3 studies	79% ± 30%	Explore

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
esophagus	100%	73588.93	1445 / 1445	100%	829.60	183 / 183
ovary	100%	162747.10	180 / 180	100%	1445.67	430 / 430
skin	100%	113567.28	1809 / 1809	100%	873.92	471 / 472
uterus	100%	89227.63	170 / 170	100%	938.08	458 / 459
thymus	100%	57261.94	651 / 653	100%	1064.02	605 / 605
prostate	100%	95474.25	245 / 245	100%	1379.59	500 / 502
adrenal gland	100%	56848.45	258 / 258	100%	671.99	229 / 230
pancreas	100%	76946.50	328 / 328	99%	957.68	177 / 178
kidney	100%	51381.69	89 / 89	99%	787.76	895 / 901
stomach	100%	57035.40	359 / 359	99%	1176.94	284 / 286
intestine	100%	72205.21	966 / 966	99%	1356.80	523 / 527
bladder	100%	80979.62	21 / 21	99%	1141.62	500 / 504
brain	99%	30354.57	2613 / 2642	100%	669.26	705 / 705
lung	99%	54272.13	575 / 578	99%	759.35	1144 / 1155
breast	100%	88612.00	459 / 459	98%	694.24	1095 / 1118
liver	100%	34938.53	226 / 226	97%	579.92	394 / 406
eye	0%	0	0 / 0	100%	2645.52	80 / 80
lymph node	0%	0	0 / 0	100%	2254.72	29 / 29
spleen	100%	80055.85	241 / 241	0%	0	0 / 0
tonsil	0%	0	0 / 0	100%	745.07	45 / 45
ureter	0%	0	0 / 0	100%	1831.55	1 / 1
adipose	100%	79777.07	1202 / 1204	0%	0	0 / 0
blood vessel	100%	59760.36	1332 / 1335	0%	0	0 / 0
muscle	99%	54633.04	795 / 803	0%	0	0 / 0
peripheral blood	97%	65591.71	903 / 929	0%	0	0 / 0
heart	97%	35537.57	835 / 861	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0

IV. Literature review

[source]

Gene name	RPL13
Protein name	Ribosomal protein L13 Large ribosomal subunit protein eL13 (60S ribosomal protein L13) (Breast basic conserved protein 1) 60S ribosomal protein L13
Synonyms	OK/SW-cl.46 BBC1 hCG_1723872
Description	FUNCTION: Component of the ribosome, a large ribonucleoprotein complex responsible for the synthesis of proteins in the cell . The small ribosomal subunit (SSU) binds messenger RNAs (mRNAs) and translates the encoded message by selecting cognate aminoacyl-transfer RNA (tRNA) molecules (Probable). The large subunit (LSU) contains the ribosomal catalytic site termed the peptidyl transferase center (PTC), which catalyzes the formation of peptide bonds, thereby polymerizing the amino acids delivered by tRNAs into a polypeptide chain (Probable). The nascent polypeptides leave the ribosome through a tunnel in the LSU and interact with protein factors that function in enzymatic processing, targeting, and the membrane insertion of nascent chains at the exit of the ribosomal tunnel (Probable). As part of the LSU, it is probably required for its formation and the maturation of rRNAs . Plays a role in bone development . .
Accessions	A8K4C8 Q6NZ55 ENST00000472354.1 H3BTH3 ENST00000311528.10 [P26373-1] P26373 ENST00000567815.5 [P26373-1] ENST00000467736.5 ENST00000563270.5 ENST00000452368.7 [P26373-2] ENST00000393099.3 [P26373-1] J3QSB4 H3BUK8 ENST00000562879.5 J3KS98

GO_0006412	Biological process	translation
GO_0001824	Biological process	blastocyst development
GO_0060348	Biological process	bone development
GO_0002181	Biological process	cytoplasmic translation
GO_0005730	Cellular component	nucleolus
GO_0022626	Cellular component	cytosolic ribosome
GO_0005783	Cellular component	endoplasmic reticulum
GO_0005829	Cellular component	cytosol
GO_0045202	Cellular component	synapse
GO_0016020	Cellular component	membrane
GO_0022625	Cellular component	cytosolic large ribosomal subunit
GO_0005737	Cellular component	cytoplasm
GO_0005634	Cellular component	nucleus
GO_0003735	Molecular function	structural constituent of ribosome
GO_0005515	Molecular function	protein binding
GO_0003723	Molecular function	RNA binding

RPL13 report

I. Expression across cell types

II. Expression across tissues

III. Associated gene sets

IV. Literature review