RPS5 | OmnibusX

I. Expression across cell types

Name	Number of supported studies	Average coverage
B cell	49 studies	91% ± 16%	Explore
natural killer cell	43 studies	82% ± 20%	Explore
macrophage	41 studies	73% ± 23%	Explore
T cell	40 studies	78% ± 26%	Explore
endothelial cell	40 studies	71% ± 26%	Explore
fibroblast	40 studies	79% ± 26%	Explore
CD8-positive, alpha-beta T cell	39 studies	83% ± 20%	Explore
CD4-positive, alpha-beta T cell	36 studies	88% ± 17%	Explore
pericyte	34 studies	77% ± 28%	Explore
conventional dendritic cell	30 studies	92% ± 9%	Explore
plasmacytoid dendritic cell	29 studies	91% ± 10%	Explore
dendritic cell	27 studies	84% ± 22%	Explore
plasma cell	27 studies	83% ± 23%	Explore
smooth muscle cell	27 studies	84% ± 23%	Explore
classical monocyte	26 studies	75% ± 20%	Explore
regulatory T cell	26 studies	92% ± 12%	Explore
monocyte	25 studies	68% ± 26%	Explore
epithelial cell	25 studies	80% ± 25%	Explore
endothelial cell of lymphatic vessel	24 studies	80% ± 22%	Explore
mature NK T cell	24 studies	79% ± 22%	Explore
non-classical monocyte	24 studies	84% ± 16%	Explore
mast cell	21 studies	75% ± 22%	Explore
gamma-delta T cell	21 studies	88% ± 16%	Explore
memory B cell	21 studies	96% ± 6%	Explore
basal cell	21 studies	88% ± 18%	Explore
naive B cell	19 studies	93% ± 17%	Explore
connective tissue cell	19 studies	88% ± 17%	Explore
ciliated cell	17 studies	72% ± 20%	Explore
mucosal invariant T cell	17 studies	91% ± 13%	Explore
naive thymus-derived CD4-positive, alpha-beta T cell	16 studies	93% ± 13%	Explore
CD16-negative, CD56-bright natural killer cell, human	15 studies	85% ± 19%	Explore
CD16-positive, CD56-dim natural killer cell, human	15 studies	82% ± 18%	Explore
endothelial cell of artery	15 studies	71% ± 23%	Explore
capillary endothelial cell	15 studies	62% ± 22%	Explore
naive thymus-derived CD8-positive, alpha-beta T cell	14 studies	97% ± 6%	Explore
myofibroblast cell	14 studies	87% ± 20%	Explore
vein endothelial cell	14 studies	76% ± 20%	Explore
myeloid cell	14 studies	77% ± 25%	Explore
CD8-positive, alpha-beta memory T cell	13 studies	88% ± 16%	Explore
effector memory CD8-positive, alpha-beta T cell	12 studies	81% ± 22%	Explore
innate lymphoid cell	12 studies	91% ± 7%	Explore
plasmablast	12 studies	93% ± 5%	Explore
CD4-positive, alpha-beta memory T cell	12 studies	87% ± 15%	Explore
secretory cell	12 studies	88% ± 16%	Explore
goblet cell	12 studies	70% ± 25%	Explore
mesothelial cell	12 studies	82% ± 23%	Explore
endothelial cell of vascular tree	12 studies	81% ± 29%	Explore
leukocyte	11 studies	75% ± 27%	Explore
erythrocyte	11 studies	63% ± 29%	Explore
T follicular helper cell	10 studies	95% ± 4%	Explore
progenitor cell	10 studies	90% ± 15%	Explore
IgG plasma cell	10 studies	80% ± 19%	Explore
type I pneumocyte	9 studies	66% ± 23%	Explore
type II pneumocyte	9 studies	78% ± 27%	Explore
neutrophil	9 studies	57% ± 18%	Explore
IgA plasma cell	9 studies	78% ± 23%	Explore
hematopoietic stem cell	9 studies	90% ± 25%	Explore
club cell	8 studies	84% ± 19%	Explore
platelet	8 studies	46% ± 26%	Explore
abnormal cell	8 studies	79% ± 24%	Explore
microglial cell	8 studies	57% ± 27%	Explore
neuron	8 studies	64% ± 26%	Explore
enterocyte	8 studies	67% ± 22%	Explore
respiratory goblet cell	7 studies	76% ± 17%	Explore
mononuclear phagocyte	7 studies	77% ± 25%	Explore
epithelial cell of proximal tubule	7 studies	74% ± 20%	Explore
astrocyte	7 studies	40% ± 20%	Explore
enteroendocrine cell	7 studies	80% ± 27%	Explore
alveolar macrophage	6 studies	76% ± 27%	Explore
ionocyte	6 studies	77% ± 16%	Explore
kidney loop of Henle epithelial cell	6 studies	70% ± 18%	Explore
renal alpha-intercalated cell	6 studies	94% ± 4%	Explore
erythroblast	6 studies	73% ± 26%	Explore
intestinal crypt stem cell	6 studies	77% ± 30%	Explore
transit amplifying cell	6 studies	81% ± 22%	Explore
amacrine cell	6 studies	40% ± 21%	Explore
retinal ganglion cell	6 studies	56% ± 30%	Explore
retinal rod cell	6 studies	53% ± 23%	Explore
precursor B cell	6 studies	95% ± 4%	Explore
brush cell	6 studies	78% ± 20%	Explore
immature B cell	6 studies	96% ± 5%	Explore
effector memory CD4-positive, alpha-beta T cell	6 studies	96% ± 5%	Explore
effector CD8-positive, alpha-beta T cell	6 studies	90% ± 16%	Explore
CD4-positive helper T cell	5 studies	90% ± 7%	Explore
central memory CD8-positive, alpha-beta T cell	5 studies	93% ± 7%	Explore
effector memory CD8-positive, alpha-beta T cell, terminally differentiated	5 studies	85% ± 11%	Explore
hematopoietic precursor cell	5 studies	90% ± 13%	Explore
kidney distal convoluted tubule epithelial cell	5 studies	85% ± 12%	Explore
megakaryocyte	5 studies	68% ± 18%	Explore
OFF-bipolar cell	5 studies	52% ± 30%	Explore
ON-bipolar cell	5 studies	51% ± 30%	Explore
retinal cone cell	5 studies	53% ± 29%	Explore
lymphocyte	5 studies	80% ± 32%	Explore
glial cell	5 studies	67% ± 22%	Explore
T-helper 17 cell	5 studies	97% ± 3%	Explore
group 3 innate lymphoid cell	5 studies	96% ± 2%	Explore
Mueller cell	5 studies	47% ± 22%	Explore
double negative thymocyte	5 studies	95% ± 4%	Explore
effector CD4-positive, alpha-beta T cell	5 studies	90% ± 18%	Explore
granulocyte	5 studies	89% ± 10%	Explore
intermediate monocyte	5 studies	75% ± 23%	Explore
CD4-positive, alpha-beta cytotoxic T cell	4 studies	75% ± 25%	Explore
deuterosomal cell	4 studies	72% ± 19%	Explore
duct epithelial cell	4 studies	94% ± 2%	Explore
exhausted T cell	4 studies	89% ± 11%	Explore
precursor cell	4 studies	81% ± 29%	Explore
pancreatic A cell	4 studies	90% ± 15%	Explore
type B pancreatic cell	4 studies	89% ± 13%	Explore
glomerular endothelial cell	4 studies	65% ± 18%	Explore
podocyte	4 studies	78% ± 17%	Explore
oligodendrocyte	4 studies	32% ± 12%	Explore
GABAergic amacrine cell	4 studies	36% ± 15%	Explore
glycinergic amacrine cell	4 studies	34% ± 14%	Explore
pro-B cell	4 studies	96% ± 3%	Explore
neuroendocrine cell	4 studies	90% ± 6%	Explore
adventitial cell	4 studies	85% ± 15%	Explore
mucus secreting cell	4 studies	78% ± 31%	Explore
retina horizontal cell	4 studies	42% ± 19%	Explore
inflammatory macrophage	4 studies	70% ± 20%	Explore
acinar cell	4 studies	85% ± 15%	Explore
muscle cell	4 studies	50% ± 25%	Explore
germinal center B cell	4 studies	96% ± 3%	Explore
luminal hormone-sensing cell of mammary gland	4 studies	95% ± 7%	Explore
hepatocyte	4 studies	56% ± 33%	Explore
IgM plasma cell	4 studies	82% ± 19%	Explore
GABAergic neuron	4 studies	29% ± 7%	Explore
megakaryocyte-erythroid progenitor cell	4 studies	80% ± 33%	Explore
melanocyte	4 studies	81% ± 17%	Explore
interneuron	4 studies	44% ± 29%	Explore
T-helper 1 cell	4 studies	99% ± 1%	Explore
squamous epithelial cell	3 studies	54% ± 23%	Explore
pancreatic D cell	3 studies	96% ± 4%	Explore
kidney connecting tubule epithelial cell	3 studies	79% ± 13%	Explore
renal beta-intercalated cell	3 studies	99% ± 0%	Explore
neural crest cell	3 studies	99% ± 1%	Explore
paneth cell	3 studies	91% ± 7%	Explore
retinal bipolar neuron	3 studies	47% ± 27%	Explore
renal principal cell	3 studies	76% ± 9%	Explore
thymocyte	3 studies	99% ± 1%	Explore
extravillous trophoblast	3 studies	99% ± 0%	Explore
placental villous trophoblast	3 studies	99% ± 0%	Explore
common myeloid progenitor	3 studies	70% ± 36%	Explore
serous secreting cell	3 studies	84% ± 10%	Explore
tissue-resident macrophage	3 studies	64% ± 30%	Explore
follicular B cell	3 studies	97% ± 2%	Explore
intraepithelial lymphocyte	3 studies	95% ± 2%	Explore
rod bipolar cell	3 studies	59% ± 20%	Explore
chondrocyte	3 studies	58% ± 25%	Explore
endothelial cell of sinusoid	3 studies	41% ± 28%	Explore
myoepithelial cell	3 studies	99% ± 1%	Explore
cholangiocyte	3 studies	45% ± 33%	Explore
luminal cell of prostate epithelium	3 studies	100% ± 0%	Explore
glutamatergic neuron	3 studies	43% ± 4%	Explore
pancreatic ductal cell	3 studies	90% ± 7%	Explore
oligodendrocyte precursor cell	3 studies	60% ± 28%	Explore
granulocyte monocyte progenitor cell	3 studies	81% ± 21%	Explore
keratinocyte	3 studies	95% ± 6%	Explore
central memory CD4-positive, alpha-beta T cell	3 studies	98% ± 2%	Explore
double-positive, alpha-beta thymocyte	3 studies	96% ± 2%	Explore
progenitor cell of mammary luminal epithelium	3 studies	99% ± 1%	Explore

II. Expression across tissues

Name	Number of supported studies	Average coverage
peripheral blood	19 studies	85% ± 16%	Explore
lung	18 studies	78% ± 17%	Explore
intestine	14 studies	77% ± 25%	Explore
eye	10 studies	50% ± 23%	Explore
brain	9 studies	38% ± 17%	Explore
kidney	8 studies	73% ± 23%	Explore
liver	7 studies	60% ± 27%	Explore
bone marrow	6 studies	82% ± 15%	Explore
pancreas	5 studies	82% ± 20%	Explore
uterus	5 studies	87% ± 16%	Explore
lymph node	4 studies	97% ± 2%	Explore
placenta	4 studies	89% ± 14%	Explore
adipose	4 studies	42% ± 29%	Explore
esophagus	4 studies	72% ± 21%	Explore
prostate	4 studies	84% ± 28%	Explore
breast	4 studies	94% ± 4%	Explore
heart	3 studies	41% ± 18%	Explore
skin	3 studies	81% ± 20%	Explore
stomach	3 studies	58% ± 25%	Explore
thymus	3 studies	83% ± 22%	Explore

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
esophagus	100%	31311.52	1445 / 1445	100%	484.22	183 / 183
ovary	100%	63100.54	180 / 180	100%	992.81	430 / 430
skin	100%	50103.45	1809 / 1809	100%	630.80	471 / 472
uterus	100%	37274.00	170 / 170	100%	648.35	458 / 459
thymus	100%	24962.31	653 / 653	100%	540.92	603 / 605
stomach	100%	23248.45	359 / 359	100%	766.46	285 / 286
prostate	100%	35220.42	245 / 245	100%	841.99	500 / 502
pancreas	100%	43419.81	328 / 328	99%	467.23	177 / 178
intestine	100%	27739.34	966 / 966	99%	906.36	524 / 527
breast	100%	33743.80	459 / 459	99%	516.39	1105 / 1118
bladder	100%	31116.38	21 / 21	99%	743.64	498 / 504
lung	100%	22690.76	576 / 578	99%	591.73	1145 / 1155
liver	100%	14398.28	225 / 226	99%	404.73	402 / 406
kidney	100%	19977.31	89 / 89	99%	420.51	888 / 901
brain	98%	11046.52	2591 / 2642	99%	428.29	701 / 705
adrenal gland	100%	27298.35	258 / 258	95%	335.44	219 / 230
eye	0%	0	0 / 0	100%	915.84	80 / 80
lymph node	0%	0	0 / 0	100%	1331.48	29 / 29
spleen	100%	28248.72	241 / 241	0%	0	0 / 0
tonsil	0%	0	0 / 0	100%	576.80	45 / 45
ureter	0%	0	0 / 0	100%	300.66	1 / 1
blood vessel	100%	23483.75	1334 / 1335	0%	0	0 / 0
adipose	100%	28906.57	1202 / 1204	0%	0	0 / 0
muscle	100%	23146.21	799 / 803	0%	0	0 / 0
heart	97%	14199.69	835 / 861	0%	0	0 / 0
peripheral blood	96%	26166.99	889 / 929	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0

III. Associated gene sets

GO_0000028	Biological process	ribosomal small subunit assembly
GO_0006412	Biological process	translation
GO_0006413	Biological process	translational initiation
GO_0042274	Biological process	ribosomal small subunit biogenesis
GO_0006450	Biological process	regulation of translational fidelity
GO_0002181	Biological process	cytoplasmic translation
GO_0005730	Cellular component	nucleolus
GO_0022626	Cellular component	cytosolic ribosome
GO_0022627	Cellular component	cytosolic small ribosomal subunit
GO_0005840	Cellular component	ribosome
GO_0016020	Cellular component	membrane
GO_0032040	Cellular component	small-subunit processome
GO_0070062	Cellular component	extracellular exosome
GO_0005654	Cellular component	nucleoplasm
GO_0005925	Cellular component	focal adhesion
GO_0005829	Cellular component	cytosol
GO_0045202	Cellular component	synapse
GO_0005737	Cellular component	cytoplasm
GO_1990904	Cellular component	ribonucleoprotein complex
GO_0019843	Molecular function	rRNA binding
GO_0003729	Molecular function	mRNA binding
GO_0003735	Molecular function	structural constituent of ribosome
GO_0003723	Molecular function	RNA binding
GO_0005515	Molecular function	protein binding

IV. Literature review

[source]

Gene name	RPS5
Protein name	Ribosomal protein S5 Small ribosomal subunit protein uS7 (40S ribosomal protein S5) [Cleaved into: Small ribosomal subunit protein uS7, N-terminally processed (40S ribosomal protein S5, N-terminally processed)]
Synonyms
Description	FUNCTION: Component of the small ribosomal subunit . The ribosome is a large ribonucleoprotein complex responsible for the synthesis of proteins in the cell . Part of the small subunit (SSU) processome, first precursor of the small eukaryotic ribosomal subunit. During the assembly of the SSU processome in the nucleolus, many ribosome biogenesis factors, an RNA chaperone and ribosomal proteins associate with the nascent pre-rRNA and work in concert to generate RNA folding, modifications, rearrangements and cleavage as well as targeted degradation of pre-ribosomal RNA by the RNA exosome . .
Accessions	ENST00000598098.5 M0R0R2 ENST00000598495.5 M0R0F0 M0QZN2 ENST00000601521.5 P46782 ENST00000596046.1 ENST00000196551.8 ENST00000596314.5

RPS5 report

I. Expression across cell types

II. Expression across tissues

III. Associated gene sets

IV. Literature review