RPS4X | OmnibusX

I. Expression across cell types

Name	Number of supported studies	Average coverage
B cell	51 studies	89% ± 21%	Explore
macrophage	46 studies	76% ± 27%	Explore
natural killer cell	45 studies	88% ± 19%	Explore
endothelial cell	44 studies	73% ± 28%	Explore
T cell	41 studies	84% ± 23%	Explore
fibroblast	41 studies	82% ± 26%	Explore
CD8-positive, alpha-beta T cell	40 studies	89% ± 18%	Explore
pericyte	37 studies	78% ± 28%	Explore
CD4-positive, alpha-beta T cell	36 studies	92% ± 14%	Explore
plasmacytoid dendritic cell	32 studies	93% ± 15%	Explore
conventional dendritic cell	31 studies	95% ± 5%	Explore
smooth muscle cell	29 studies	82% ± 28%	Explore
dendritic cell	27 studies	88% ± 19%	Explore
plasma cell	27 studies	87% ± 18%	Explore
endothelial cell of lymphatic vessel	27 studies	81% ± 26%	Explore
regulatory T cell	27 studies	92% ± 17%	Explore
mast cell	26 studies	81% ± 25%	Explore
classical monocyte	26 studies	87% ± 15%	Explore
monocyte	25 studies	81% ± 20%	Explore
mature NK T cell	25 studies	86% ± 20%	Explore
non-classical monocyte	25 studies	91% ± 12%	Explore
epithelial cell	25 studies	83% ± 25%	Explore
basal cell	22 studies	88% ± 22%	Explore
gamma-delta T cell	21 studies	94% ± 9%	Explore
memory B cell	21 studies	98% ± 4%	Explore
connective tissue cell	19 studies	91% ± 14%	Explore
naive B cell	18 studies	97% ± 6%	Explore
ciliated cell	17 studies	80% ± 20%	Explore
mucosal invariant T cell	17 studies	95% ± 11%	Explore
capillary endothelial cell	17 studies	67% ± 23%	Explore
CD16-negative, CD56-bright natural killer cell, human	16 studies	85% ± 23%	Explore
naive thymus-derived CD4-positive, alpha-beta T cell	16 studies	94% ± 12%	Explore
endothelial cell of artery	16 studies	78% ± 18%	Explore
CD16-positive, CD56-dim natural killer cell, human	15 studies	88% ± 20%	Explore
naive thymus-derived CD8-positive, alpha-beta T cell	14 studies	98% ± 4%	Explore
CD8-positive, alpha-beta memory T cell	14 studies	89% ± 18%	Explore
myofibroblast cell	14 studies	90% ± 19%	Explore
vein endothelial cell	14 studies	84% ± 16%	Explore
myeloid cell	14 studies	82% ± 21%	Explore
innate lymphoid cell	13 studies	91% ± 18%	Explore
erythrocyte	13 studies	67% ± 25%	Explore
mesothelial cell	13 studies	79% ± 27%	Explore
endothelial cell of vascular tree	13 studies	81% ± 29%	Explore
effector memory CD8-positive, alpha-beta T cell	12 studies	87% ± 21%	Explore
plasmablast	12 studies	95% ± 5%	Explore
CD4-positive, alpha-beta memory T cell	12 studies	93% ± 10%	Explore
secretory cell	12 studies	91% ± 14%	Explore
astrocyte	12 studies	32% ± 17%	Explore
microglial cell	12 studies	53% ± 31%	Explore
goblet cell	11 studies	82% ± 15%	Explore
type II pneumocyte	10 studies	78% ± 29%	Explore
T follicular helper cell	10 studies	99% ± 2%	Explore
neutrophil	10 studies	73% ± 15%	Explore
progenitor cell	10 studies	94% ± 9%	Explore
leukocyte	10 studies	87% ± 17%	Explore
IgG plasma cell	10 studies	87% ± 15%	Explore
hematopoietic stem cell	10 studies	85% ± 29%	Explore
type I pneumocyte	9 studies	72% ± 23%	Explore
club cell	9 studies	81% ± 29%	Explore
neuron	9 studies	68% ± 23%	Explore
IgA plasma cell	9 studies	84% ± 20%	Explore
platelet	8 studies	60% ± 22%	Explore
glutamatergic neuron	8 studies	36% ± 18%	Explore
abnormal cell	8 studies	80% ± 28%	Explore
enterocyte	8 studies	73% ± 20%	Explore
respiratory goblet cell	7 studies	81% ± 18%	Explore
mononuclear phagocyte	7 studies	83% ± 24%	Explore
oligodendrocyte	7 studies	26% ± 11%	Explore
epithelial cell of proximal tubule	7 studies	84% ± 14%	Explore
enteroendocrine cell	7 studies	90% ± 11%	Explore
retinal rod cell	7 studies	49% ± 24%	Explore
alveolar macrophage	6 studies	82% ± 23%	Explore
CD4-positive helper T cell	6 studies	83% ± 27%	Explore
ionocyte	6 studies	85% ± 17%	Explore
kidney loop of Henle epithelial cell	6 studies	88% ± 14%	Explore
renal alpha-intercalated cell	6 studies	99% ± 1%	Explore
megakaryocyte	6 studies	69% ± 29%	Explore
erythroblast	6 studies	77% ± 20%	Explore
intestinal crypt stem cell	6 studies	78% ± 29%	Explore
transit amplifying cell	6 studies	84% ± 25%	Explore
amacrine cell	6 studies	47% ± 24%	Explore
retinal ganglion cell	6 studies	57% ± 27%	Explore
precursor B cell	6 studies	97% ± 3%	Explore
brush cell	6 studies	82% ± 18%	Explore
glial cell	6 studies	66% ± 27%	Explore
immature B cell	6 studies	98% ± 3%	Explore
melanocyte	6 studies	66% ± 32%	Explore
effector memory CD4-positive, alpha-beta T cell	6 studies	98% ± 2%	Explore
effector CD8-positive, alpha-beta T cell	6 studies	92% ± 15%	Explore
GABAergic neuron	6 studies	34% ± 13%	Explore
central memory CD8-positive, alpha-beta T cell	5 studies	97% ± 4%	Explore
effector memory CD8-positive, alpha-beta T cell, terminally differentiated	5 studies	94% ± 5%	Explore
hematopoietic precursor cell	5 studies	92% ± 10%	Explore
kidney distal convoluted tubule epithelial cell	5 studies	96% ± 4%	Explore
OFF-bipolar cell	5 studies	60% ± 26%	Explore
ON-bipolar cell	5 studies	57% ± 26%	Explore
retinal cone cell	5 studies	56% ± 28%	Explore
lymphocyte	5 studies	84% ± 29%	Explore
T-helper 17 cell	5 studies	99% ± 1%	Explore
chondrocyte	5 studies	64% ± 33%	Explore
group 3 innate lymphoid cell	5 studies	97% ± 2%	Explore
Mueller cell	5 studies	55% ± 19%	Explore
double negative thymocyte	5 studies	98% ± 2%	Explore
effector CD4-positive, alpha-beta T cell	5 studies	97% ± 6%	Explore
granulocyte	5 studies	94% ± 6%	Explore
intermediate monocyte	5 studies	85% ± 15%	Explore
interneuron	5 studies	50% ± 24%	Explore
CD4-positive, alpha-beta cytotoxic T cell	4 studies	84% ± 22%	Explore
deuterosomal cell	4 studies	78% ± 20%	Explore
duct epithelial cell	4 studies	97% ± 1%	Explore
exhausted T cell	4 studies	94% ± 8%	Explore
precursor cell	4 studies	84% ± 26%	Explore
pancreatic A cell	4 studies	91% ± 10%	Explore
type B pancreatic cell	4 studies	90% ± 14%	Explore
endothelial cell of sinusoid	4 studies	48% ± 28%	Explore
glomerular endothelial cell	4 studies	73% ± 15%	Explore
kidney connecting tubule epithelial cell	4 studies	95% ± 4%	Explore
podocyte	4 studies	86% ± 11%	Explore
GABAergic amacrine cell	4 studies	45% ± 17%	Explore
glycinergic amacrine cell	4 studies	44% ± 16%	Explore
pro-B cell	4 studies	98% ± 1%	Explore
neuroendocrine cell	4 studies	98% ± 1%	Explore
Schwann cell	4 studies	58% ± 35%	Explore
adventitial cell	4 studies	87% ± 14%	Explore
mucus secreting cell	4 studies	78% ± 31%	Explore
retina horizontal cell	4 studies	43% ± 14%	Explore
inflammatory macrophage	4 studies	75% ± 21%	Explore
acinar cell	4 studies	85% ± 19%	Explore
muscle cell	4 studies	53% ± 22%	Explore
germinal center B cell	4 studies	98% ± 1%	Explore
luminal hormone-sensing cell of mammary gland	4 studies	98% ± 4%	Explore
hepatocyte	4 studies	60% ± 31%	Explore
IgM plasma cell	4 studies	94% ± 6%	Explore
oligodendrocyte precursor cell	4 studies	48% ± 30%	Explore
megakaryocyte-erythroid progenitor cell	4 studies	83% ± 29%	Explore
T-helper 1 cell	4 studies	100% ± 0%	Explore
squamous epithelial cell	3 studies	53% ± 24%	Explore
pancreatic D cell	3 studies	96% ± 3%	Explore
renal beta-intercalated cell	3 studies	100% ± 0%	Explore
neural crest cell	3 studies	100% ± 0%	Explore
paneth cell	3 studies	93% ± 8%	Explore
retinal bipolar neuron	3 studies	55% ± 28%	Explore
renal principal cell	3 studies	90% ± 6%	Explore
thymocyte	3 studies	100% ± 0%	Explore
extravillous trophoblast	3 studies	100% ± 0%	Explore
placental villous trophoblast	3 studies	100% ± 0%	Explore
common myeloid progenitor	3 studies	72% ± 36%	Explore
serous secreting cell	3 studies	82% ± 6%	Explore
tissue-resident macrophage	3 studies	71% ± 32%	Explore
follicular B cell	3 studies	99% ± 1%	Explore
intraepithelial lymphocyte	3 studies	98% ± 2%	Explore
rod bipolar cell	3 studies	66% ± 17%	Explore
myoepithelial cell	3 studies	100% ± 0%	Explore
cholangiocyte	3 studies	50% ± 32%	Explore
luminal cell of prostate epithelium	3 studies	100% ± 0%	Explore
retinal pigment epithelial cell	3 studies	48% ± 19%	Explore
pancreatic ductal cell	3 studies	89% ± 6%	Explore
granulocyte monocyte progenitor cell	3 studies	85% ± 18%	Explore
keratinocyte	3 studies	98% ± 3%	Explore
central memory CD4-positive, alpha-beta T cell	3 studies	99% ± 1%	Explore
double-positive, alpha-beta thymocyte	3 studies	98% ± 1%	Explore
progenitor cell of mammary luminal epithelium	3 studies	100% ± 0%	Explore

II. Expression across tissues

Name	Number of supported studies	Average coverage
lung	19 studies	82% ± 19%	Explore
peripheral blood	19 studies	90% ± 13%	Explore
intestine	13 studies	88% ± 16%	Explore
brain	13 studies	39% ± 19%	Explore
eye	10 studies	57% ± 22%	Explore
kidney	8 studies	82% ± 18%	Explore
liver	7 studies	65% ± 23%	Explore
bone marrow	6 studies	89% ± 9%	Explore
pancreas	5 studies	84% ± 17%	Explore
uterus	5 studies	92% ± 14%	Explore
lymph node	4 studies	98% ± 2%	Explore
placenta	4 studies	87% ± 20%	Explore
heart	4 studies	41% ± 20%	Explore
skin	4 studies	72% ± 30%	Explore
adipose	4 studies	50% ± 27%	Explore
esophagus	4 studies	80% ± 14%	Explore
prostate	4 studies	85% ± 26%	Explore
breast	4 studies	97% ± 3%	Explore
stomach	3 studies	62% ± 20%	Explore
thymus	3 studies	84% ± 23%	Explore

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
ovary	100%	142386.04	180 / 180	100%	2344.07	430 / 430
pancreas	100%	62198.93	328 / 328	100%	1263.05	178 / 178
prostate	100%	55239.48	245 / 245	100%	1846.61	502 / 502
skin	100%	86724.39	1809 / 1809	100%	1679.08	472 / 472
stomach	100%	42792.44	359 / 359	100%	1853.82	286 / 286
thymus	100%	50486.66	653 / 653	100%	2718.76	605 / 605
uterus	100%	87825.77	170 / 170	100%	1842.46	459 / 459
esophagus	100%	52633.75	1444 / 1445	100%	1118.07	183 / 183
bladder	100%	59593.57	21 / 21	100%	1599.98	503 / 504
intestine	100%	55004.12	966 / 966	100%	2077.15	525 / 527
breast	100%	73727.08	459 / 459	100%	1983.95	1113 / 1118
lung	99%	43002.32	575 / 578	100%	1367.72	1152 / 1155
kidney	100%	41369.69	89 / 89	98%	1073.74	887 / 901
adrenal gland	100%	36990.54	258 / 258	98%	972.35	226 / 230
brain	98%	22532.06	2599 / 2642	99%	968.24	701 / 705
liver	85%	14976.42	193 / 226	93%	827.22	376 / 406
adipose	100%	61367.23	1204 / 1204	0%	0	0 / 0
eye	0%	0	0 / 0	100%	3386.11	80 / 80
lymph node	0%	0	0 / 0	100%	3147.66	29 / 29
spleen	100%	50776.72	241 / 241	0%	0	0 / 0
tonsil	0%	0	0 / 0	100%	1303.59	45 / 45
ureter	0%	0	0 / 0	100%	688.99	1 / 1
blood vessel	100%	53781.59	1334 / 1335	0%	0	0 / 0
muscle	99%	35531.73	795 / 803	0%	0	0 / 0
peripheral blood	96%	51381.23	893 / 929	0%	0	0 / 0
heart	93%	23876.08	804 / 861	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0

III. Associated gene sets

GO_0006412	Biological process	translation
GO_0042274	Biological process	ribosomal small subunit biogenesis
GO_0045727	Biological process	positive regulation of translation
GO_0008284	Biological process	positive regulation of cell population proliferation
GO_0002181	Biological process	cytoplasmic translation
GO_0005730	Cellular component	nucleolus
GO_0022626	Cellular component	cytosolic ribosome
GO_0022627	Cellular component	cytosolic small ribosomal subunit
GO_0005840	Cellular component	ribosome
GO_0016020	Cellular component	membrane
GO_0032040	Cellular component	small-subunit processome
GO_0036464	Cellular component	cytoplasmic ribonucleoprotein granule
GO_0070062	Cellular component	extracellular exosome
GO_0005654	Cellular component	nucleoplasm
GO_0005925	Cellular component	focal adhesion
GO_0005829	Cellular component	cytosol
GO_0045202	Cellular component	synapse
GO_0015935	Cellular component	small ribosomal subunit
GO_1990904	Cellular component	ribonucleoprotein complex
GO_0019843	Molecular function	rRNA binding
GO_0003735	Molecular function	structural constituent of ribosome
GO_0003723	Molecular function	RNA binding
GO_0005515	Molecular function	protein binding

IV. Literature review

[source]

Gene name	RPS4X
Protein name	Small ribosomal subunit protein eS4, X isoform (40S ribosomal protein S4) (SCR10) (Single copy abundant mRNA protein) 40S ribosomal protein S4 RPS4X protein
Synonyms	hCG_18634 RPS4 SCAR CCG2
Description	FUNCTION: Component of the small ribosomal subunit. The ribosome is a large ribonucleoprotein complex responsible for the synthesis of proteins in the cell . Part of the small subunit (SSU) processome, first precursor of the small eukaryotic ribosomal subunit. During the assembly of the SSU processome in the nucleolus, many ribosome biogenesis factors, an RNA chaperone and ribosomal proteins associate with the nascent pre-rRNA and work in concert to generate RNA folding, modifications, rearrangements and cleavage as well as targeted degradation of pre-ribosomal RNA by the RNA exosome . .
Accessions	Q96IR1 B2R491 P62701 ENST00000316084.10

RPS4X report

I. Expression across cell types

II. Expression across tissues

III. Associated gene sets

IV. Literature review