Name | Number of supported studies | Average coverage | |
---|---|---|---|
lung | 19 studies | 81% ± 19% | |
peripheral blood | 19 studies | 85% ± 16% | |
intestine | 13 studies | 86% ± 18% | |
brain | 11 studies | 39% ± 23% | |
eye | 10 studies | 54% ± 22% | |
kidney | 8 studies | 75% ± 23% | |
liver | 7 studies | 65% ± 25% | |
bone marrow | 6 studies | 85% ± 16% | |
pancreas | 5 studies | 83% ± 21% | |
uterus | 5 studies | 87% ± 21% | |
lymph node | 4 studies | 97% ± 3% | |
placenta | 4 studies | 86% ± 23% | |
heart | 4 studies | 41% ± 18% | |
adipose | 4 studies | 47% ± 30% | |
esophagus | 4 studies | 78% ± 16% | |
prostate | 4 studies | 81% ± 33% | |
skin | 4 studies | 81% ± 25% | |
breast | 4 studies | 93% ± 5% | |
stomach | 3 studies | 61% ± 19% | |
thymus | 3 studies | 80% ± 27% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
ovary | 100% | 91517.93 | 180 / 180 | 100% | 2898.00 | 430 / 430 |
uterus | 100% | 45803.31 | 170 / 170 | 100% | 1524.06 | 459 / 459 |
esophagus | 100% | 47855.03 | 1444 / 1445 | 100% | 1499.74 | 183 / 183 |
skin | 100% | 83389.67 | 1809 / 1809 | 100% | 1664.91 | 471 / 472 |
intestine | 100% | 43039.27 | 966 / 966 | 100% | 2201.01 | 525 / 527 |
pancreas | 100% | 71675.33 | 328 / 328 | 99% | 1101.49 | 177 / 178 |
prostate | 100% | 46764.92 | 245 / 245 | 99% | 1911.68 | 499 / 502 |
thymus | 100% | 33262.77 | 652 / 653 | 100% | 1176.13 | 602 / 605 |
stomach | 100% | 36495.89 | 359 / 359 | 99% | 1886.52 | 284 / 286 |
bladder | 100% | 53990.33 | 21 / 21 | 99% | 1602.94 | 499 / 504 |
breast | 100% | 56302.80 | 459 / 459 | 99% | 1495.69 | 1104 / 1118 |
lung | 99% | 38796.08 | 575 / 578 | 99% | 1265.99 | 1146 / 1155 |
kidney | 100% | 28326.03 | 89 / 89 | 98% | 942.67 | 887 / 901 |
adrenal gland | 100% | 37833.79 | 258 / 258 | 94% | 650.45 | 216 / 230 |
liver | 99% | 22611.92 | 223 / 226 | 89% | 682.38 | 361 / 406 |
brain | 85% | 12570.90 | 2237 / 2642 | 95% | 844.58 | 672 / 705 |
eye | 0% | 0 | 0 / 0 | 100% | 3287.46 | 80 / 80 |
lymph node | 0% | 0 | 0 / 0 | 100% | 2646.77 | 29 / 29 |
spleen | 100% | 56710.59 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 1331.29 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 1539.75 | 1 / 1 |
muscle | 100% | 40553.59 | 802 / 803 | 0% | 0 | 0 / 0 |
adipose | 100% | 49827.65 | 1202 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 99% | 30505.85 | 1328 / 1335 | 0% | 0 | 0 / 0 |
peripheral blood | 99% | 64751.03 | 919 / 929 | 0% | 0 | 0 / 0 |
heart | 95% | 23079.76 | 819 / 861 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0051443 | Biological process | positive regulation of ubiquitin-protein transferase activity |
GO_0006412 | Biological process | translation |
GO_0002181 | Biological process | cytoplasmic translation |
GO_0005730 | Cellular component | nucleolus |
GO_0022626 | Cellular component | cytosolic ribosome |
GO_0022627 | Cellular component | cytosolic small ribosomal subunit |
GO_0016020 | Cellular component | membrane |
GO_0070062 | Cellular component | extracellular exosome |
GO_0005654 | Cellular component | nucleoplasm |
GO_0005925 | Cellular component | focal adhesion |
GO_0005829 | Cellular component | cytosol |
GO_0005737 | Cellular component | cytoplasm |
GO_0005634 | Cellular component | nucleus |
GO_0019899 | Molecular function | enzyme binding |
GO_0045296 | Molecular function | cadherin binding |
GO_0003729 | Molecular function | mRNA binding |
GO_0003735 | Molecular function | structural constituent of ribosome |
GO_0003723 | Molecular function | RNA binding |
GO_0017134 | Molecular function | fibroblast growth factor binding |
GO_0005515 | Molecular function | protein binding |
Gene name | RPS2 |
Protein name | Ribosomal protein S2 Small ribosomal subunit protein uS5 (40S ribosomal protein S2) Small ribosomal subunit protein uS5 (40S ribosomal protein S2) (40S ribosomal protein S4) (Protein LLRep3) RPS2 protein |
Synonyms | hCG_1990006 RPS4 OK/KNS-cl.7 |
Description | FUNCTION: Component of the ribosome, a large ribonucleoprotein complex responsible for the synthesis of proteins in the cell . The small ribosomal subunit (SSU) binds messenger RNAs (mRNAs) and translates the encoded message by selecting cognate aminoacyl-transfer RNA (tRNA) molecules . The large subunit (LSU) contains the ribosomal catalytic site termed the peptidyl transferase center (PTC), which catalyzes the formation of peptide bonds, thereby polymerizing the amino acids delivered by tRNAs into a polypeptide chain . The nascent polypeptides leave the ribosome through a tunnel in the LSU and interact with protein factors that function in enzymatic processing, targeting, and the membrane insertion of nascent chains at the exit of the ribosomal tunnel . Plays a role in the assembly and function of the 40S ribosomal subunit (By similarity). Mutations in this protein affects the control of translational fidelity (By similarity). Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly (By similarity). . |
Accessions | ENST00000709238.1 ENST00000530225.5 ENST00000527302.1 Q8N5L9 I3L404 ENST00000343262.9 E9PQD7 E9PM36 ENST00000526586.6 Q8NI61 Q3KQT6 P15880 Q9BSW5 ENST00000529806.5 H0YE27 E9PMM9 H0YEN5 ENST00000563194.1 ENST00000532746.5 E9PPT0 Q6IPX5 ENST00000526522.5 ENST00000533186.5 H3BNG3 |