SNRPG | OmnibusX

I. Expression across cell types

Name	Number of supported studies	Average coverage
natural killer cell	37 studies	38% ± 12%	Explore
B cell	35 studies	39% ± 13%	Explore
fibroblast	35 studies	35% ± 14%	Explore
endothelial cell	33 studies	42% ± 18%	Explore
CD8-positive, alpha-beta T cell	33 studies	43% ± 17%	Explore
CD4-positive, alpha-beta T cell	31 studies	43% ± 18%	Explore
T cell	29 studies	44% ± 16%	Explore
conventional dendritic cell	28 studies	45% ± 15%	Explore
macrophage	27 studies	39% ± 15%	Explore
pericyte	26 studies	34% ± 11%	Explore
smooth muscle cell	25 studies	34% ± 11%	Explore
regulatory T cell	24 studies	45% ± 14%	Explore
non-classical monocyte	23 studies	43% ± 13%	Explore
classical monocyte	23 studies	36% ± 11%	Explore
plasmacytoid dendritic cell	21 studies	42% ± 13%	Explore
epithelial cell	21 studies	51% ± 19%	Explore
memory B cell	20 studies	36% ± 12%	Explore
basal cell	20 studies	47% ± 17%	Explore
mast cell	19 studies	35% ± 13%	Explore
monocyte	18 studies	41% ± 15%	Explore
naive B cell	17 studies	35% ± 8%	Explore
mature NK T cell	17 studies	34% ± 7%	Explore
gamma-delta T cell	17 studies	39% ± 15%	Explore
plasma cell	16 studies	45% ± 15%	Explore
dendritic cell	16 studies	43% ± 21%	Explore
connective tissue cell	16 studies	43% ± 13%	Explore
endothelial cell of lymphatic vessel	15 studies	43% ± 14%	Explore
ciliated cell	15 studies	60% ± 16%	Explore
CD16-positive, CD56-dim natural killer cell, human	14 studies	34% ± 8%	Explore
naive thymus-derived CD4-positive, alpha-beta T cell	14 studies	32% ± 8%	Explore
myofibroblast cell	13 studies	37% ± 12%	Explore
myeloid cell	13 studies	45% ± 17%	Explore
CD8-positive, alpha-beta memory T cell	12 studies	41% ± 15%	Explore
naive thymus-derived CD8-positive, alpha-beta T cell	12 studies	38% ± 10%	Explore
capillary endothelial cell	12 studies	37% ± 10%	Explore
mucosal invariant T cell	12 studies	32% ± 8%	Explore
plasmablast	11 studies	54% ± 23%	Explore
CD4-positive, alpha-beta memory T cell	11 studies	39% ± 16%	Explore
secretory cell	11 studies	46% ± 19%	Explore
vein endothelial cell	11 studies	44% ± 12%	Explore
endothelial cell of vascular tree	11 studies	46% ± 13%	Explore
CD16-negative, CD56-bright natural killer cell, human	10 studies	34% ± 6%	Explore
progenitor cell	10 studies	50% ± 15%	Explore
abnormal cell	10 studies	44% ± 17%	Explore
endothelial cell of artery	10 studies	39% ± 11%	Explore
effector memory CD8-positive, alpha-beta T cell	9 studies	36% ± 13%	Explore
goblet cell	9 studies	41% ± 15%	Explore
type I pneumocyte	8 studies	35% ± 18%	Explore
leukocyte	8 studies	39% ± 13%	Explore
T follicular helper cell	8 studies	43% ± 8%	Explore
type II pneumocyte	7 studies	46% ± 22%	Explore
club cell	7 studies	52% ± 10%	Explore
effector CD8-positive, alpha-beta T cell	7 studies	51% ± 18%	Explore
epithelial cell of proximal tubule	7 studies	45% ± 12%	Explore
mesothelial cell	7 studies	41% ± 16%	Explore
precursor B cell	7 studies	51% ± 17%	Explore
hematopoietic precursor cell	6 studies	50% ± 20%	Explore
effector CD4-positive, alpha-beta T cell	6 studies	47% ± 15%	Explore
kidney loop of Henle epithelial cell	6 studies	41% ± 6%	Explore
renal alpha-intercalated cell	6 studies	52% ± 8%	Explore
enterocyte	6 studies	32% ± 4%	Explore
transit amplifying cell	6 studies	44% ± 26%	Explore
innate lymphoid cell	6 studies	36% ± 6%	Explore
neuron	6 studies	43% ± 20%	Explore
erythrocyte	6 studies	46% ± 27%	Explore
effector memory CD4-positive, alpha-beta T cell	6 studies	45% ± 19%	Explore
alveolar macrophage	5 studies	34% ± 9%	Explore
exhausted T cell	5 studies	48% ± 10%	Explore
ionocyte	5 studies	40% ± 10%	Explore
respiratory goblet cell	5 studies	47% ± 19%	Explore
mononuclear phagocyte	5 studies	45% ± 15%	Explore
enteroendocrine cell	5 studies	47% ± 19%	Explore
erythroblast	5 studies	66% ± 20%	Explore
hematopoietic stem cell	5 studies	40% ± 14%	Explore
pro-B cell	5 studies	46% ± 13%	Explore
intermediate monocyte	5 studies	54% ± 15%	Explore
granulocyte	5 studies	36% ± 11%	Explore
deuterosomal cell	4 studies	63% ± 25%	Explore
glomerular endothelial cell	4 studies	33% ± 8%	Explore
kidney distal convoluted tubule epithelial cell	4 studies	60% ± 15%	Explore
intestinal crypt stem cell	4 studies	37% ± 14%	Explore
IgG plasma cell	4 studies	25% ± 7%	Explore
microglial cell	4 studies	31% ± 12%	Explore
retinal cone cell	4 studies	53% ± 29%	Explore
brush cell	4 studies	36% ± 21%	Explore
immature B cell	4 studies	44% ± 11%	Explore
retinal rod cell	4 studies	37% ± 19%	Explore
adventitial cell	4 studies	31% ± 10%	Explore
mucus secreting cell	4 studies	33% ± 9%	Explore
neutrophil	4 studies	25% ± 4%	Explore
germinal center B cell	4 studies	51% ± 13%	Explore
CD4-positive helper T cell	4 studies	35% ± 12%	Explore
luminal hormone-sensing cell of mammary gland	4 studies	53% ± 6%	Explore
megakaryocyte-erythroid progenitor cell	4 studies	55% ± 20%	Explore
hepatocyte	4 studies	44% ± 30%	Explore
T-helper 17 cell	4 studies	53% ± 22%	Explore
effector memory CD8-positive, alpha-beta T cell, terminally differentiated	4 studies	34% ± 7%	Explore
duct epithelial cell	3 studies	39% ± 8%	Explore
precursor cell	3 studies	64% ± 7%	Explore
pancreatic A cell	3 studies	74% ± 13%	Explore
type B pancreatic cell	3 studies	56% ± 19%	Explore
podocyte	3 studies	62% ± 15%	Explore
neural crest cell	3 studies	55% ± 15%	Explore
retinal bipolar neuron	3 studies	52% ± 23%	Explore
OFF-bipolar cell	3 studies	25% ± 6%	Explore
ON-bipolar cell	3 studies	22% ± 7%	Explore
thymocyte	3 studies	37% ± 23%	Explore
extravillous trophoblast	3 studies	70% ± 13%	Explore
placental villous trophoblast	3 studies	80% ± 12%	Explore
lymphocyte	3 studies	54% ± 13%	Explore
megakaryocyte	3 studies	34% ± 3%	Explore
neuroendocrine cell	3 studies	56% ± 14%	Explore
amacrine cell	3 studies	44% ± 12%	Explore
astrocyte	3 studies	40% ± 19%	Explore
retina horizontal cell	3 studies	37% ± 20%	Explore
serous secreting cell	3 studies	49% ± 4%	Explore
intraepithelial lymphocyte	3 studies	41% ± 15%	Explore
Mueller cell	3 studies	61% ± 10%	Explore
acinar cell	3 studies	30% ± 7%	Explore
muscle cell	3 studies	44% ± 17%	Explore
inflammatory macrophage	3 studies	24% ± 7%	Explore
luminal cell of prostate epithelium	3 studies	45% ± 10%	Explore
glutamatergic neuron	3 studies	21% ± 4%	Explore
oligodendrocyte precursor cell	3 studies	36% ± 13%	Explore
granulocyte monocyte progenitor cell	3 studies	53% ± 31%	Explore
glial cell	3 studies	41% ± 23%	Explore
group 3 innate lymphoid cell	3 studies	43% ± 20%	Explore
keratinocyte	3 studies	42% ± 8%	Explore
T-helper 1 cell	3 studies	55% ± 15%	Explore
central memory CD4-positive, alpha-beta T cell	3 studies	30% ± 9%	Explore
central memory CD8-positive, alpha-beta T cell	3 studies	31% ± 11%	Explore
double negative thymocyte	3 studies	53% ± 19%	Explore
progenitor cell of mammary luminal epithelium	3 studies	32% ± 3%	Explore

II. Expression across tissues

Name	Number of supported studies	Average coverage
peripheral blood	19 studies	36% ± 10%	Explore
lung	18 studies	46% ± 16%	Explore
intestine	12 studies	33% ± 15%	Explore
kidney	9 studies	41% ± 10%	Explore
eye	8 studies	39% ± 16%	Explore
liver	7 studies	41% ± 23%	Explore
bone marrow	6 studies	34% ± 10%	Explore
lymph node	6 studies	42% ± 12%	Explore
brain	6 studies	31% ± 9%	Explore
uterus	5 studies	43% ± 16%	Explore
pancreas	4 studies	54% ± 22%	Explore
placenta	4 studies	54% ± 24%	Explore
prostate	4 studies	46% ± 9%	Explore
breast	4 studies	41% ± 2%	Explore
adrenal gland	3 studies	40% ± 7%	Explore
esophagus	3 studies	49% ± 23%	Explore
skin	3 studies	30% ± 5%	Explore
thymus	3 studies	58% ± 17%	Explore

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
esophagus	100%	1332.44	1445 / 1445	100%	92.54	183 / 183
ovary	100%	1060.75	180 / 180	100%	91.72	430 / 430
stomach	100%	983.85	359 / 359	100%	82.59	286 / 286
uterus	100%	1149.08	170 / 170	100%	124.83	459 / 459
thymus	100%	1329.64	653 / 653	100%	71.10	604 / 605
bladder	100%	1130.86	21 / 21	100%	107.41	503 / 504
lung	100%	1245.84	576 / 578	100%	105.39	1155 / 1155
intestine	100%	1273.99	966 / 966	100%	90.94	525 / 527
liver	100%	891.72	225 / 226	100%	51.97	406 / 406
breast	100%	1275.50	459 / 459	100%	82.03	1113 / 1118
brain	100%	762.43	2633 / 2642	100%	74.49	704 / 705
skin	100%	1397.56	1807 / 1809	100%	65.10	470 / 472
kidney	100%	1528.91	89 / 89	99%	49.46	896 / 901
prostate	100%	1158.13	245 / 245	99%	59.74	499 / 502
adrenal gland	100%	1716.26	258 / 258	99%	52.78	227 / 230
pancreas	99%	609.10	324 / 328	99%	66.59	177 / 178
lymph node	0%	0	0 / 0	100%	149.88	29 / 29
spleen	100%	1443.85	241 / 241	0%	0	0 / 0
tonsil	0%	0	0 / 0	100%	91.91	45 / 45
ureter	0%	0	0 / 0	100%	82.47	1 / 1
adipose	100%	1232.61	1203 / 1204	0%	0	0 / 0
blood vessel	100%	1182.09	1333 / 1335	0%	0	0 / 0
muscle	99%	994.45	797 / 803	0%	0	0 / 0
heart	99%	1090.98	850 / 861	0%	0	0 / 0
eye	0%	0	0 / 0	98%	42.51	78 / 80
peripheral blood	58%	1067.74	541 / 929	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0

III. Associated gene sets

GO_0000387	Biological process	spliceosomal snRNP assembly
GO_0036261	Biological process	7-methylguanosine cap hypermethylation
GO_1903241	Biological process	U2-type prespliceosome assembly
GO_0000398	Biological process	mRNA splicing, via spliceosome
GO_0008380	Biological process	RNA splicing
GO_0000245	Biological process	spliceosomal complex assembly
GO_0046540	Cellular component	U4/U6 x U5 tri-snRNP complex
GO_0005686	Cellular component	U2 snRNP
GO_0005685	Cellular component	U1 snRNP
GO_0043186	Cellular component	P granule
GO_0005681	Cellular component	spliceosomal complex
GO_0005654	Cellular component	nucleoplasm
GO_0071007	Cellular component	U2-type catalytic step 2 spliceosome
GO_0071005	Cellular component	U2-type precatalytic spliceosome
GO_0005683	Cellular component	U7 snRNP
GO_0034709	Cellular component	methylosome
GO_0034719	Cellular component	SMN-Sm protein complex
GO_0071011	Cellular component	precatalytic spliceosome
GO_0005829	Cellular component	cytosol
GO_0097526	Cellular component	spliceosomal tri-snRNP complex
GO_0005684	Cellular component	U2-type spliceosomal complex
GO_0005682	Cellular component	U5 snRNP
GO_0005687	Cellular component	U4 snRNP
GO_0071004	Cellular component	U2-type prespliceosome
GO_0071013	Cellular component	catalytic step 2 spliceosome
GO_0030532	Cellular component	small nuclear ribonucleoprotein complex
GO_0005689	Cellular component	U12-type spliceosomal complex
GO_0005634	Cellular component	nucleus
GO_0003723	Molecular function	RNA binding
GO_0005515	Molecular function	protein binding

IV. Literature review

[source]

Gene name	SNRPG
Protein name	Small nuclear ribonucleoprotein G (snRNP-G) Small nuclear ribonucleoprotein G (snRNP-G) (Sm protein G) (Sm-G) (SmG)
Synonyms	PBSCG
Description	FUNCTION: Plays a role in pre-mRNA splicing as a core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome . Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes . As a component of the minor spliceosome, involved in the splicing of U12-type introns in pre-mRNAs . As part of the U7 snRNP it is involved in histone 3'-end processing . . FUNCTION: Plays role in pre-mRNA splicing as core component of the SMN-Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. . FUNCTION: Plays role in pre-mRNA splicing as core component of the SMN-Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. . FUNCTION: Plays role in pre-mRNA splicing as core component of the SMN-Sm complex that mediates spliceosomal snRNP assembly and as component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome. Component of both the pre-catalytic spliceosome B complex and activated spliceosome C complexes. Is also a component of the minor U12 spliceosome. As part of the U7 snRNP it is involved in histone 3'-end processing. .
Accessions	ENST00000482975.6 ENST00000449935.6 ENST00000438261.5 F5H013 ENST00000272348.7 ENST00000454893.1 C9JVQ0 ENST00000413456.6 Q49AN9 P62308

SNRPG report

I. Expression across cell types

II. Expression across tissues

III. Associated gene sets

IV. Literature review