Name | Number of supported studies | Average coverage | |
---|---|---|---|
peripheral blood | 20 studies | 54% ± 17% | |
lung | 19 studies | 66% ± 21% | |
intestine | 13 studies | 41% ± 19% | |
kidney | 9 studies | 55% ± 17% | |
bone marrow | 6 studies | 48% ± 21% | |
lymph node | 6 studies | 39% ± 28% | |
pancreas | 5 studies | 51% ± 21% | |
placenta | 5 studies | 70% ± 35% | |
uterus | 5 studies | 74% ± 18% | |
prostate | 5 studies | 68% ± 33% | |
heart | 4 studies | 32% ± 14% | |
brain | 4 studies | 52% ± 23% | |
esophagus | 4 studies | 76% ± 15% | |
liver | 4 studies | 44% ± 19% | |
skin | 4 studies | 70% ± 18% | |
breast | 4 studies | 78% ± 4% | |
adipose | 3 studies | 35% ± 15% | |
adrenal gland | 3 studies | 37% ± 8% | |
thymus | 3 studies | 46% ± 16% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
lung | 100% | 16375.20 | 576 / 578 | 98% | 3699.48 | 1128 / 1155 |
breast | 100% | 11944.46 | 459 / 459 | 97% | 2815.55 | 1080 / 1118 |
skin | 100% | 18639.91 | 1808 / 1809 | 96% | 1999.06 | 453 / 472 |
bladder | 100% | 15909.14 | 21 / 21 | 96% | 5236.94 | 483 / 504 |
prostate | 100% | 11391.42 | 245 / 245 | 95% | 1148.95 | 476 / 502 |
thymus | 99% | 7088.56 | 644 / 653 | 95% | 1747.12 | 573 / 605 |
kidney | 100% | 13074.49 | 89 / 89 | 93% | 1620.47 | 836 / 901 |
uterus | 94% | 6646.41 | 160 / 170 | 98% | 5752.20 | 451 / 459 |
esophagus | 90% | 34403.41 | 1303 / 1445 | 100% | 4419.59 | 183 / 183 |
stomach | 92% | 7327.26 | 331 / 359 | 98% | 2677.82 | 279 / 286 |
intestine | 90% | 5418.30 | 866 / 966 | 99% | 2621.24 | 520 / 527 |
ovary | 47% | 1949.18 | 85 / 180 | 99% | 3123.43 | 425 / 430 |
pancreas | 40% | 2306.37 | 132 / 328 | 93% | 3897.19 | 166 / 178 |
adrenal gland | 76% | 3792.93 | 197 / 258 | 36% | 411.72 | 82 / 230 |
spleen | 100% | 14363.31 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 5100.75 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 4702.90 | 1 / 1 |
adipose | 100% | 13144.53 | 1202 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 99% | 13160.89 | 1325 / 1335 | 0% | 0 | 0 / 0 |
peripheral blood | 87% | 73335.93 | 807 / 929 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 83% | 887.07 | 66 / 80 |
lymph node | 0% | 0 | 0 / 0 | 79% | 774.10 | 23 / 29 |
heart | 65% | 3736.77 | 558 / 861 | 0% | 0 | 0 / 0 |
brain | 6% | 273.68 | 152 / 2642 | 23% | 248.35 | 165 / 705 |
liver | 9% | 486.49 | 20 / 226 | 19% | 423.64 | 78 / 406 |
muscle | 6% | 243.26 | 45 / 803 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0008285 | Biological process | negative regulation of cell population proliferation |
GO_0007165 | Biological process | signal transduction |
GO_0014911 | Biological process | positive regulation of smooth muscle cell migration |
GO_0008156 | Biological process | negative regulation of DNA replication |
GO_0098609 | Biological process | cell-cell adhesion |
GO_0001726 | Cellular component | ruffle |
GO_0005615 | Cellular component | extracellular space |
GO_0005576 | Cellular component | extracellular region |
GO_0070062 | Cellular component | extracellular exosome |
GO_0034774 | Cellular component | secretory granule lumen |
GO_0005912 | Cellular component | adherens junction |
GO_0005737 | Cellular component | cytoplasm |
GO_0005634 | Cellular component | nucleus |
GO_0042803 | Molecular function | protein homodimerization activity |
GO_0048306 | Molecular function | calcium-dependent protein binding |
GO_0098641 | Molecular function | cadherin binding involved in cell-cell adhesion |
GO_0044548 | Molecular function | S100 protein binding |
GO_0005509 | Molecular function | calcium ion binding |
GO_0005515 | Molecular function | protein binding |
Gene name | S100A11 |
Protein name | Protein S100-A11 (Calgizzarin) (Metastatic lymph node gene 70 protein) (MLN 70) (Protein S100-C) (S100 calcium-binding protein A11) [Cleaved into: Protein S100-A11, N-terminally processed] Protein S100 (S100 calcium-binding protein) |
Synonyms | hCG_16921 S100C HEL-S-43 MLN70 |
Description | FUNCTION: Facilitates the differentiation and the cornification of keratinocytes. . FUNCTION: Facilitates the differentiation and the cornification of keratinocytes. . |
Accessions | P31949 V9HWH9 ENST00000271638.3 |