Name | Number of supported studies | Average coverage | |
---|---|---|---|
lung | 19 studies | 70% ± 22% | |
peripheral blood | 19 studies | 83% ± 20% | |
intestine | 14 studies | 68% ± 25% | |
brain | 10 studies | 38% ± 15% | |
eye | 10 studies | 48% ± 20% | |
kidney | 8 studies | 70% ± 21% | |
liver | 7 studies | 58% ± 27% | |
pancreas | 5 studies | 74% ± 21% | |
bone marrow | 5 studies | 84% ± 13% | |
uterus | 5 studies | 84% ± 19% | |
lymph node | 4 studies | 95% ± 3% | |
placenta | 4 studies | 84% ± 16% | |
esophagus | 4 studies | 65% ± 26% | |
prostate | 4 studies | 79% ± 32% | |
breast | 4 studies | 89% ± 4% | |
heart | 3 studies | 39% ± 18% | |
adipose | 3 studies | 48% ± 28% | |
skin | 3 studies | 66% ± 27% | |
stomach | 3 studies | 51% ± 27% | |
thymus | 3 studies | 82% ± 24% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 40569.85 | 1445 / 1445 | 100% | 422.62 | 183 / 183 |
ovary | 100% | 68562.88 | 180 / 180 | 100% | 852.03 | 430 / 430 |
pancreas | 100% | 51165.70 | 328 / 328 | 100% | 452.84 | 178 / 178 |
skin | 100% | 58785.15 | 1809 / 1809 | 100% | 549.30 | 472 / 472 |
thymus | 100% | 31890.51 | 653 / 653 | 100% | 526.65 | 605 / 605 |
uterus | 100% | 41696.19 | 170 / 170 | 100% | 611.05 | 458 / 459 |
brain | 100% | 20873.84 | 2634 / 2642 | 100% | 539.11 | 705 / 705 |
intestine | 100% | 38038.32 | 966 / 966 | 99% | 694.44 | 524 / 527 |
prostate | 100% | 41802.92 | 245 / 245 | 99% | 650.31 | 499 / 502 |
stomach | 100% | 32411.30 | 359 / 359 | 99% | 578.60 | 284 / 286 |
bladder | 100% | 38429.62 | 21 / 21 | 99% | 669.42 | 500 / 504 |
lung | 100% | 31646.33 | 576 / 578 | 99% | 440.37 | 1147 / 1155 |
breast | 100% | 38087.37 | 459 / 459 | 99% | 481.16 | 1106 / 1118 |
kidney | 100% | 27464.99 | 89 / 89 | 99% | 323.65 | 891 / 901 |
liver | 99% | 17215.73 | 224 / 226 | 95% | 316.29 | 387 / 406 |
adrenal gland | 100% | 29194.93 | 258 / 258 | 94% | 296.25 | 217 / 230 |
eye | 0% | 0 | 0 / 0 | 100% | 553.70 | 80 / 80 |
lymph node | 0% | 0 | 0 / 0 | 100% | 1298.43 | 29 / 29 |
spleen | 100% | 49706.79 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 517.74 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 526.08 | 1 / 1 |
adipose | 100% | 33236.23 | 1202 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 26859.12 | 1330 / 1335 | 0% | 0 | 0 / 0 |
muscle | 99% | 21638.97 | 794 / 803 | 0% | 0 | 0 / 0 |
heart | 97% | 17656.42 | 836 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 97% | 42347.53 | 898 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0000028 | Biological process | ribosomal small subunit assembly |
GO_0006412 | Biological process | translation |
GO_0007155 | Biological process | cell adhesion |
GO_0046718 | Biological process | symbiont entry into host cell |
GO_0002181 | Biological process | cytoplasmic translation |
GO_0140374 | Biological process | antiviral innate immune response |
GO_0022626 | Cellular component | cytosolic ribosome |
GO_0005886 | Cellular component | plasma membrane |
GO_0022627 | Cellular component | cytosolic small ribosomal subunit |
GO_0016020 | Cellular component | membrane |
GO_0070062 | Cellular component | extracellular exosome |
GO_0005654 | Cellular component | nucleoplasm |
GO_0005829 | Cellular component | cytosol |
GO_0005737 | Cellular component | cytoplasm |
GO_0005634 | Cellular component | nucleus |
GO_0003677 | Molecular function | DNA binding |
GO_0043022 | Molecular function | ribosome binding |
GO_0001618 | Molecular function | virus receptor activity |
GO_0003735 | Molecular function | structural constituent of ribosome |
GO_0005055 | Molecular function | laminin receptor activity |
GO_0003723 | Molecular function | RNA binding |
GO_0043236 | Molecular function | laminin binding |
GO_0005515 | Molecular function | protein binding |
Gene name | RPSA |
Protein name | Small ribosomal subunit protein uS2 (37 kDa laminin receptor precursor) (37LRP) (37/67 kDa laminin receptor) (LRP/LR) (67 kDa laminin receptor) (67LR) (Laminin receptor 1) (LamR) (Laminin-binding protein precursor p40) (LBP/p40) Small ribosomal subunit protein uS2 (37 kDa laminin receptor precursor) (37LRP) (37/67 kDa laminin receptor) (LRP/LR) (40S ribosomal protein SA) (67 kDa laminin receptor) (67LR) (Colon carcinoma laminin-binding protein) (Laminin receptor 1) (LamR) (Laminin-binding protein precursor p40) (LBP/p40) (Multidrug resistance-associated protein MGr1-Ag) (NEM/1CHD4) Ribosomal protein SA 40S ribosomal protein SA |
Synonyms | hCG_1997894 LAMR1 LAMBR |
Description | FUNCTION: Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA-precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. Also functions as a cell surface receptor for laminin. Plays a role in cell adhesion to the basement membrane and in the consequent activation of signaling transduction pathways. May play a role in cell fate determination and tissue morphogenesis. Acts as a PPP1R16B-dependent substrate of PPP1CA. .; FUNCTION: (Microbial infection) Acts as a receptor for the Adeno-associated viruses 2,3,8 and 9. .; FUNCTION: (Microbial infection) Acts as a receptor for the Dengue virus. .; FUNCTION: (Microbial infection) Acts as a receptor for the Sindbis virus. .; FUNCTION: (Microbial infection) Acts as a receptor for the Venezuelan equine encephalitis virus. .; FUNCTION: (Microbial infection) Acts as a receptor for the pathogenic prion protein. .; FUNCTION: (Microbial infection) Acts as a receptor for bacteria. . FUNCTION: Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA-precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. Also functions as a cell surface receptor for laminin. Plays a role in cell adhesion to the basement membrane and in the consequent activation of signaling transduction pathways. May play a role in cell fate determination and tissue morphogenesis. Also acts as a receptor for several other ligands, including the pathogenic prion protein, viruses, and bacteria. Acts as a PPP1R16B-dependent substrate of PPP1CA. . FUNCTION: Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA-precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. Also functions as a cell surface receptor for laminin. Plays a role in cell adhesion to the basement membrane and in the consequent activation of signaling transduction pathways. May play a role in cell fate determination and tissue morphogenesis. Also acts as a receptor for several other ligands, including the pathogenic prion protein, viruses, and bacteria. Acts as a PPP1R16B-dependent substrate of PPP1CA. . FUNCTION: Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA-precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. Also functions as a cell surface receptor for laminin. Plays a role in cell adhesion to the basement membrane and in the consequent activation of signaling transduction pathways. May play a role in cell fate determination and tissue morphogenesis. Also acts as a receptor for several other ligands, including the pathogenic prion protein, viruses, and bacteria. Acts as a PPP1R16B-dependent substrate of PPP1CA. . |
Accessions | A0A8V8TMX1 Q96RS2 ENST00000697753.1 F8WD59 C9J9K3 A0A8V8TLA4 ENST00000458478.5 ENST00000301821.11 ENST00000697816.1 A0A8V8TMZ8 ENST00000458478.6 ENST00000697729.1 ENST00000443003.2 ENST00000697731.1 A0A8V8TMP3 A0A0C4DG17 ENST00000697728.1 ENST00000697754.1 P08865 ENST00000697730.1 ENST00000444512.2 |