Name | Number of supported studies | Average coverage | |
---|---|---|---|
peripheral blood | 19 studies | 89% ± 19% | |
lung | 18 studies | 88% ± 16% | |
intestine | 13 studies | 91% ± 16% | |
brain | 13 studies | 42% ± 21% | |
eye | 10 studies | 64% ± 22% | |
kidney | 8 studies | 82% ± 23% | |
liver | 7 studies | 63% ± 26% | |
bone marrow | 6 studies | 84% ± 25% | |
pancreas | 5 studies | 85% ± 17% | |
uterus | 5 studies | 94% ± 10% | |
lymph node | 4 studies | 100% ± 1% | |
placenta | 4 studies | 87% ± 22% | |
heart | 4 studies | 47% ± 21% | |
adipose | 4 studies | 36% ± 35% | |
esophagus | 4 studies | 73% ± 24% | |
prostate | 4 studies | 98% ± 3% | |
breast | 4 studies | 97% ± 3% | |
skin | 3 studies | 79% ± 27% | |
stomach | 3 studies | 65% ± 29% | |
thymus | 3 studies | 72% ± 39% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 33443.39 | 1445 / 1445 | 100% | 1927.75 | 183 / 183 |
lung | 100% | 33565.03 | 578 / 578 | 100% | 2087.42 | 1155 / 1155 |
ovary | 100% | 95815.04 | 180 / 180 | 100% | 3801.51 | 430 / 430 |
prostate | 100% | 43986.67 | 245 / 245 | 100% | 2302.66 | 502 / 502 |
skin | 100% | 48931.20 | 1809 / 1809 | 100% | 1987.03 | 472 / 472 |
uterus | 100% | 49773.77 | 170 / 170 | 100% | 2186.63 | 458 / 459 |
breast | 100% | 48870.85 | 459 / 459 | 100% | 2333.19 | 1115 / 1118 |
thymus | 100% | 40207.63 | 653 / 653 | 100% | 2421.33 | 603 / 605 |
stomach | 100% | 31844.35 | 359 / 359 | 100% | 2073.84 | 285 / 286 |
bladder | 100% | 46902.10 | 21 / 21 | 100% | 1909.62 | 502 / 504 |
pancreas | 100% | 33571.15 | 328 / 328 | 99% | 2029.99 | 177 / 178 |
intestine | 100% | 39614.85 | 966 / 966 | 99% | 1956.65 | 524 / 527 |
liver | 100% | 14988.38 | 225 / 226 | 99% | 1569.26 | 403 / 406 |
kidney | 100% | 30602.10 | 89 / 89 | 98% | 1474.52 | 879 / 901 |
brain | 98% | 16874.90 | 2580 / 2642 | 99% | 1352.84 | 700 / 705 |
adrenal gland | 100% | 26716.88 | 258 / 258 | 92% | 1144.03 | 211 / 230 |
adipose | 100% | 43837.43 | 1204 / 1204 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 100% | 2782.54 | 80 / 80 |
lymph node | 0% | 0 | 0 / 0 | 100% | 4679.82 | 29 / 29 |
spleen | 100% | 53138.23 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 1811.04 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 902.26 | 1 / 1 |
blood vessel | 100% | 36989.79 | 1334 / 1335 | 0% | 0 | 0 / 0 |
muscle | 99% | 24618.27 | 793 / 803 | 0% | 0 | 0 / 0 |
heart | 98% | 18121.84 | 842 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 84% | 28198.97 | 784 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0000028 | Biological process | ribosomal small subunit assembly |
GO_0006412 | Biological process | translation |
GO_0042274 | Biological process | ribosomal small subunit biogenesis |
GO_0006364 | Biological process | rRNA processing |
GO_0002181 | Biological process | cytoplasmic translation |
GO_0005730 | Cellular component | nucleolus |
GO_0022626 | Cellular component | cytosolic ribosome |
GO_0022627 | Cellular component | cytosolic small ribosomal subunit |
GO_0005840 | Cellular component | ribosome |
GO_0032040 | Cellular component | small-subunit processome |
GO_0005654 | Cellular component | nucleoplasm |
GO_0005829 | Cellular component | cytosol |
GO_0014069 | Cellular component | postsynaptic density |
GO_0005634 | Cellular component | nucleus |
GO_0003677 | Molecular function | DNA binding |
GO_0003735 | Molecular function | structural constituent of ribosome |
GO_0008270 | Molecular function | zinc ion binding |
GO_0003723 | Molecular function | RNA binding |
GO_0005515 | Molecular function | protein binding |
Gene name | RPS27 |
Protein name | Small ribosomal subunit protein eS27 (40S ribosomal protein S27) (Metallopan-stimulin 1) (MPS-1) Ribosomal protein S27 |
Synonyms | MPS1 |
Description | FUNCTION: Component of the small ribosomal subunit . The ribosome is a large ribonucleoprotein complex responsible for the synthesis of proteins in the cell . Required for proper rRNA processing and maturation of 18S rRNAs . Part of the small subunit (SSU) processome, first precursor of the small eukaryotic ribosomal subunit. During the assembly of the SSU processome in the nucleolus, many ribosome biogenesis factors, an RNA chaperone and ribosomal proteins associate with the nascent pre-rRNA and work in concert to generate RNA folding, modifications, rearrangements and cleavage as well as targeted degradation of pre-ribosomal RNA by the RNA exosome . . |
Accessions | A0A2R8Y731 ENST00000651669.1 P42677 ENST00000643794.1 |