RPS15A | OmnibusX

I. Expression across cell types

Name	Number of supported studies	Average coverage
B cell	48 studies	93% ± 15%	Explore
macrophage	42 studies	82% ± 23%	Explore
natural killer cell	42 studies	93% ± 12%	Explore
T cell	41 studies	83% ± 24%	Explore
endothelial cell	40 studies	77% ± 27%	Explore
CD8-positive, alpha-beta T cell	39 studies	92% ± 17%	Explore
fibroblast	38 studies	86% ± 22%	Explore
CD4-positive, alpha-beta T cell	35 studies	94% ± 12%	Explore
pericyte	34 studies	82% ± 25%	Explore
conventional dendritic cell	31 studies	96% ± 4%	Explore
plasmacytoid dendritic cell	29 studies	96% ± 4%	Explore
plasma cell	27 studies	86% ± 19%	Explore
dendritic cell	26 studies	89% ± 19%	Explore
smooth muscle cell	26 studies	88% ± 19%	Explore
regulatory T cell	26 studies	96% ± 9%	Explore
monocyte	25 studies	81% ± 23%	Explore
endothelial cell of lymphatic vessel	25 studies	83% ± 25%	Explore
classical monocyte	25 studies	92% ± 9%	Explore
mature NK T cell	25 studies	87% ± 21%	Explore
epithelial cell	25 studies	82% ± 25%	Explore
non-classical monocyte	24 studies	94% ± 10%	Explore
mast cell	23 studies	86% ± 16%	Explore
memory B cell	21 studies	98% ± 4%	Explore
basal cell	21 studies	88% ± 20%	Explore
gamma-delta T cell	20 studies	96% ± 6%	Explore
connective tissue cell	19 studies	91% ± 13%	Explore
naive B cell	18 studies	97% ± 6%	Explore
mucosal invariant T cell	17 studies	95% ± 11%	Explore
ciliated cell	16 studies	79% ± 20%	Explore
CD16-negative, CD56-bright natural killer cell, human	16 studies	87% ± 22%	Explore
naive thymus-derived CD4-positive, alpha-beta T cell	16 studies	96% ± 12%	Explore
endothelial cell of artery	16 studies	80% ± 18%	Explore
capillary endothelial cell	16 studies	74% ± 20%	Explore
CD16-positive, CD56-dim natural killer cell, human	15 studies	93% ± 8%	Explore
neutrophil	14 studies	63% ± 28%	Explore
vein endothelial cell	14 studies	85% ± 16%	Explore
myeloid cell	14 studies	81% ± 25%	Explore
naive thymus-derived CD8-positive, alpha-beta T cell	13 studies	100% ± 1%	Explore
myofibroblast cell	13 studies	94% ± 7%	Explore
effector memory CD8-positive, alpha-beta T cell	12 studies	89% ± 20%	Explore
innate lymphoid cell	12 studies	97% ± 4%	Explore
plasmablast	12 studies	96% ± 5%	Explore
CD8-positive, alpha-beta memory T cell	12 studies	96% ± 10%	Explore
secretory cell	12 studies	90% ± 18%	Explore
erythrocyte	12 studies	71% ± 25%	Explore
goblet cell	12 studies	77% ± 24%	Explore
mesothelial cell	12 studies	79% ± 25%	Explore
endothelial cell of vascular tree	12 studies	84% ± 28%	Explore
CD4-positive, alpha-beta memory T cell	11 studies	95% ± 8%	Explore
leukocyte	11 studies	80% ± 27%	Explore
T follicular helper cell	10 studies	99% ± 1%	Explore
progenitor cell	10 studies	91% ± 15%	Explore
type I pneumocyte	9 studies	70% ± 25%	Explore
type II pneumocyte	9 studies	80% ± 24%	Explore
astrocyte	9 studies	36% ± 20%	Explore
microglial cell	9 studies	62% ± 32%	Explore
IgG plasma cell	9 studies	87% ± 15%	Explore
hematopoietic stem cell	9 studies	93% ± 18%	Explore
club cell	8 studies	86% ± 18%	Explore
abnormal cell	8 studies	77% ± 30%	Explore
neuron	8 studies	62% ± 28%	Explore
enterocyte	8 studies	74% ± 23%	Explore
IgA plasma cell	8 studies	85% ± 21%	Explore
respiratory goblet cell	7 studies	72% ± 22%	Explore
platelet	7 studies	71% ± 19%	Explore
mononuclear phagocyte	7 studies	85% ± 24%	Explore
epithelial cell of proximal tubule	7 studies	80% ± 21%	Explore
enteroendocrine cell	7 studies	86% ± 16%	Explore
retinal rod cell	7 studies	50% ± 25%	Explore
kidney loop of Henle epithelial cell	6 studies	82% ± 12%	Explore
renal alpha-intercalated cell	6 studies	97% ± 2%	Explore
intestinal crypt stem cell	6 studies	80% ± 27%	Explore
transit amplifying cell	6 studies	86% ± 22%	Explore
amacrine cell	6 studies	41% ± 22%	Explore
precursor B cell	6 studies	98% ± 2%	Explore
brush cell	6 studies	82% ± 16%	Explore
immature B cell	6 studies	97% ± 4%	Explore
effector memory CD4-positive, alpha-beta T cell	6 studies	99% ± 2%	Explore
alveolar macrophage	5 studies	93% ± 6%	Explore
CD4-positive helper T cell	5 studies	97% ± 3%	Explore
central memory CD8-positive, alpha-beta T cell	5 studies	98% ± 2%	Explore
effector memory CD8-positive, alpha-beta T cell, terminally differentiated	5 studies	96% ± 4%	Explore
hematopoietic precursor cell	5 studies	92% ± 12%	Explore
ionocyte	5 studies	92% ± 5%	Explore
kidney distal convoluted tubule epithelial cell	5 studies	93% ± 6%	Explore
megakaryocyte	5 studies	87% ± 11%	Explore
oligodendrocyte	5 studies	24% ± 10%	Explore
erythroblast	5 studies	89% ± 6%	Explore
retinal ganglion cell	5 studies	54% ± 29%	Explore
OFF-bipolar cell	5 studies	53% ± 24%	Explore
ON-bipolar cell	5 studies	53% ± 24%	Explore
retinal cone cell	5 studies	57% ± 27%	Explore
lymphocyte	5 studies	84% ± 30%	Explore
glial cell	5 studies	80% ± 15%	Explore
T-helper 17 cell	5 studies	99% ± 1%	Explore
group 3 innate lymphoid cell	5 studies	95% ± 4%	Explore
Mueller cell	5 studies	58% ± 22%	Explore
double negative thymocyte	5 studies	99% ± 2%	Explore
effector CD4-positive, alpha-beta T cell	5 studies	99% ± 2%	Explore
effector CD8-positive, alpha-beta T cell	5 studies	100% ± 0%	Explore
granulocyte	5 studies	95% ± 4%	Explore
GABAergic neuron	5 studies	25% ± 9%	Explore
glutamatergic neuron	5 studies	30% ± 9%	Explore
intermediate monocyte	5 studies	90% ± 11%	Explore
oligodendrocyte precursor cell	5 studies	41% ± 30%	Explore
melanocyte	5 studies	72% ± 29%	Explore
interneuron	5 studies	43% ± 25%	Explore
CD4-positive, alpha-beta cytotoxic T cell	4 studies	86% ± 21%	Explore
deuterosomal cell	4 studies	74% ± 30%	Explore
duct epithelial cell	4 studies	96% ± 1%	Explore
exhausted T cell	4 studies	98% ± 2%	Explore
precursor cell	4 studies	83% ± 27%	Explore
pancreatic A cell	4 studies	92% ± 9%	Explore
type B pancreatic cell	4 studies	89% ± 15%	Explore
endothelial cell of sinusoid	4 studies	54% ± 31%	Explore
glomerular endothelial cell	4 studies	84% ± 10%	Explore
kidney connecting tubule epithelial cell	4 studies	91% ± 5%	Explore
podocyte	4 studies	88% ± 10%	Explore
GABAergic amacrine cell	4 studies	35% ± 14%	Explore
glycinergic amacrine cell	4 studies	36% ± 14%	Explore
pro-B cell	4 studies	98% ± 1%	Explore
neuroendocrine cell	4 studies	96% ± 4%	Explore
adventitial cell	4 studies	85% ± 14%	Explore
mucus secreting cell	4 studies	79% ± 31%	Explore
retina horizontal cell	4 studies	39% ± 15%	Explore
inflammatory macrophage	4 studies	77% ± 20%	Explore
acinar cell	4 studies	78% ± 26%	Explore
muscle cell	4 studies	54% ± 21%	Explore
germinal center B cell	4 studies	99% ± 0%	Explore
luminal hormone-sensing cell of mammary gland	4 studies	96% ± 7%	Explore
IgM plasma cell	4 studies	90% ± 10%	Explore
T-helper 1 cell	4 studies	100% ± 0%	Explore
squamous epithelial cell	3 studies	53% ± 30%	Explore
pancreatic D cell	3 studies	95% ± 3%	Explore
renal beta-intercalated cell	3 studies	99% ± 1%	Explore
neural crest cell	3 studies	100% ± 0%	Explore
paneth cell	3 studies	94% ± 8%	Explore
retinal bipolar neuron	3 studies	54% ± 27%	Explore
renal principal cell	3 studies	88% ± 7%	Explore
thymocyte	3 studies	100% ± 0%	Explore
extravillous trophoblast	3 studies	99% ± 1%	Explore
placental villous trophoblast	3 studies	99% ± 1%	Explore
Schwann cell	3 studies	68% ± 38%	Explore
chondrocyte	3 studies	78% ± 27%	Explore
serous secreting cell	3 studies	86% ± 10%	Explore
tissue-resident macrophage	3 studies	67% ± 29%	Explore
follicular B cell	3 studies	99% ± 1%	Explore
intraepithelial lymphocyte	3 studies	98% ± 1%	Explore
rod bipolar cell	3 studies	65% ± 19%	Explore
myoepithelial cell	3 studies	99% ± 1%	Explore
cholangiocyte	3 studies	46% ± 36%	Explore
hepatocyte	3 studies	72% ± 32%	Explore
luminal cell of prostate epithelium	3 studies	100% ± 0%	Explore
retinal pigment epithelial cell	3 studies	44% ± 21%	Explore
pancreatic ductal cell	3 studies	90% ± 7%	Explore
granulocyte monocyte progenitor cell	3 studies	78% ± 26%	Explore
megakaryocyte-erythroid progenitor cell	3 studies	100% ± 0%	Explore
keratinocyte	3 studies	96% ± 4%	Explore
central memory CD4-positive, alpha-beta T cell	3 studies	99% ± 1%	Explore
double-positive, alpha-beta thymocyte	3 studies	99% ± 0%	Explore
progenitor cell of mammary luminal epithelium	3 studies	100% ± 0%	Explore

II. Expression across tissues

Name	Number of supported studies	Average coverage
lung	18 studies	85% ± 16%	Explore
peripheral blood	18 studies	93% ± 12%	Explore
intestine	14 studies	82% ± 24%	Explore
brain	12 studies	34% ± 22%	Explore
eye	10 studies	57% ± 24%	Explore
kidney	8 studies	80% ± 22%	Explore
liver	7 studies	63% ± 28%	Explore
bone marrow	6 studies	90% ± 9%	Explore
pancreas	5 studies	83% ± 18%	Explore
uterus	5 studies	90% ± 11%	Explore
lymph node	4 studies	99% ± 1%	Explore
placenta	4 studies	90% ± 15%	Explore
heart	4 studies	38% ± 19%	Explore
esophagus	4 studies	72% ± 23%	Explore
prostate	4 studies	87% ± 22%	Explore
breast	4 studies	96% ± 4%	Explore
adipose	3 studies	55% ± 32%	Explore
skin	3 studies	86% ± 15%	Explore
stomach	3 studies	69% ± 21%	Explore
thymus	3 studies	81% ± 26%	Explore

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
breast	100%	38733.31	459 / 459	100%	40.71	1118 / 1118
esophagus	100%	27406.24	1445 / 1445	100%	36.76	183 / 183
intestine	100%	29016.19	966 / 966	100%	47.50	527 / 527
ovary	100%	61714.54	180 / 180	100%	70.47	430 / 430
pancreas	100%	27576.23	328 / 328	100%	34.87	178 / 178
prostate	100%	28640.00	245 / 245	100%	46.02	502 / 502
stomach	100%	22564.63	359 / 359	100%	45.81	286 / 286
uterus	100%	34075.12	170 / 170	100%	42.43	459 / 459
thymus	100%	23386.98	653 / 653	100%	42.02	604 / 605
bladder	100%	29175.57	21 / 21	100%	42.38	503 / 504
lung	100%	23647.87	576 / 578	100%	33.13	1155 / 1155
skin	100%	41290.96	1809 / 1809	99%	26.53	469 / 472
kidney	100%	19796.18	89 / 89	99%	29.20	895 / 901
adrenal gland	100%	22333.78	258 / 258	97%	21.47	224 / 230
liver	100%	13803.94	226 / 226	96%	24.18	391 / 406
brain	95%	8332.32	2499 / 2642	99%	29.64	695 / 705
adipose	100%	33358.76	1204 / 1204	0%	0	0 / 0
eye	0%	0	0 / 0	100%	45.02	80 / 80
lymph node	0%	0	0 / 0	100%	83.42	29 / 29
spleen	100%	33278.34	241 / 241	0%	0	0 / 0
tonsil	0%	0	0 / 0	100%	30.91	45 / 45
ureter	0%	0	0 / 0	100%	32.05	1 / 1
blood vessel	100%	23712.53	1334 / 1335	0%	0	0 / 0
muscle	100%	23589.99	799 / 803	0%	0	0 / 0
heart	98%	14253.26	843 / 861	0%	0	0 / 0
peripheral blood	84%	24133.10	782 / 929	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0

III. Associated gene sets

GO_0006412	Biological process	translation
GO_0009615	Biological process	response to virus
GO_0042274	Biological process	ribosomal small subunit biogenesis
GO_0008284	Biological process	positive regulation of cell population proliferation
GO_0045787	Biological process	positive regulation of cell cycle
GO_0002181	Biological process	cytoplasmic translation
GO_0005730	Cellular component	nucleolus
GO_0022626	Cellular component	cytosolic ribosome
GO_0022627	Cellular component	cytosolic small ribosomal subunit
GO_0016020	Cellular component	membrane
GO_0032040	Cellular component	small-subunit processome
GO_0070062	Cellular component	extracellular exosome
GO_0005654	Cellular component	nucleoplasm
GO_0005829	Cellular component	cytosol
GO_0045202	Cellular component	synapse
GO_0005737	Cellular component	cytoplasm
GO_0003735	Molecular function	structural constituent of ribosome
GO_0003723	Molecular function	RNA binding
GO_0005515	Molecular function	protein binding

IV. Literature review

[source]

Gene name	RPS15A
Protein name	40S ribosomal protein S15a Ribosomal protein S15a Small ribosomal subunit protein uS8 (40S ribosomal protein S15a)
Synonyms	OK/SW-cl.82
Description	FUNCTION: Component of the small ribosomal subunit . Part of the small subunit (SSU) processome, first precursor of the small eukaryotic ribosomal subunit. During the assembly of the SSU processome in the nucleolus, many ribosome biogenesis factors, an RNA chaperone and ribosomal proteins associate with the nascent pre-rRNA and work in concert to generate RNA folding, modifications, rearrangements and cleavage as well as targeted degradation of pre-ribosomal RNA by the RNA exosome . Required for proper erythropoiesis . .
Accessions	I3L246 ENST00000569365.6 ENST00000576436.5 H3BV27 ENST00000563579.1 ENST00000562935.5 P62244 H3BT37 ENST00000574723.5 ENST00000322989.8 ENST00000576008.5 ENST00000569083.1 ENST00000572008.5 I3L303 ENST00000565420.5 I3L3P7 H3BVC7 ENST00000563390.5

RPS15A report

I. Expression across cell types

II. Expression across tissues

III. Associated gene sets

IV. Literature review