RPS13 | OmnibusX

I. Expression across cell types

Name	Number of supported studies	Average coverage
B cell	49 studies	92% ± 16%	Explore
natural killer cell	43 studies	87% ± 18%	Explore
macrophage	42 studies	81% ± 24%	Explore
T cell	41 studies	80% ± 25%	Explore
fibroblast	41 studies	81% ± 27%	Explore
endothelial cell	40 studies	76% ± 27%	Explore
CD8-positive, alpha-beta T cell	38 studies	89% ± 17%	Explore
CD4-positive, alpha-beta T cell	35 studies	92% ± 13%	Explore
pericyte	34 studies	82% ± 26%	Explore
plasmacytoid dendritic cell	31 studies	95% ± 9%	Explore
conventional dendritic cell	30 studies	96% ± 4%	Explore
smooth muscle cell	29 studies	83% ± 25%	Explore
dendritic cell	28 studies	88% ± 19%	Explore
plasma cell	26 studies	86% ± 18%	Explore
endothelial cell of lymphatic vessel	26 studies	80% ± 27%	Explore
classical monocyte	26 studies	92% ± 12%	Explore
regulatory T cell	26 studies	95% ± 10%	Explore
monocyte	25 studies	85% ± 19%	Explore
non-classical monocyte	25 studies	92% ± 14%	Explore
epithelial cell	25 studies	82% ± 25%	Explore
mature NK T cell	24 studies	84% ± 22%	Explore
mast cell	23 studies	84% ± 17%	Explore
gamma-delta T cell	21 studies	90% ± 15%	Explore
memory B cell	21 studies	97% ± 5%	Explore
basal cell	21 studies	88% ± 18%	Explore
connective tissue cell	19 studies	90% ± 13%	Explore
naive B cell	18 studies	97% ± 6%	Explore
mucosal invariant T cell	17 studies	94% ± 11%	Explore
ciliated cell	16 studies	83% ± 16%	Explore
naive thymus-derived CD4-positive, alpha-beta T cell	16 studies	94% ± 13%	Explore
endothelial cell of artery	16 studies	77% ± 21%	Explore
capillary endothelial cell	16 studies	69% ± 23%	Explore
CD16-negative, CD56-bright natural killer cell, human	15 studies	89% ± 17%	Explore
CD16-positive, CD56-dim natural killer cell, human	15 studies	90% ± 14%	Explore
myeloid cell	15 studies	77% ± 30%	Explore
naive thymus-derived CD8-positive, alpha-beta T cell	14 studies	97% ± 7%	Explore
myofibroblast cell	14 studies	89% ± 21%	Explore
vein endothelial cell	14 studies	83% ± 18%	Explore
CD8-positive, alpha-beta memory T cell	13 studies	90% ± 18%	Explore
erythrocyte	13 studies	64% ± 28%	Explore
effector memory CD8-positive, alpha-beta T cell	12 studies	86% ± 21%	Explore
innate lymphoid cell	12 studies	95% ± 5%	Explore
plasmablast	12 studies	94% ± 5%	Explore
CD4-positive, alpha-beta memory T cell	12 studies	90% ± 14%	Explore
secretory cell	12 studies	91% ± 14%	Explore
goblet cell	12 studies	75% ± 23%	Explore
mesothelial cell	12 studies	84% ± 23%	Explore
endothelial cell of vascular tree	12 studies	84% ± 26%	Explore
neutrophil	11 studies	71% ± 25%	Explore
astrocyte	11 studies	38% ± 21%	Explore
T follicular helper cell	10 studies	98% ± 2%	Explore
progenitor cell	10 studies	91% ± 15%	Explore
leukocyte	10 studies	82% ± 25%	Explore
IgG plasma cell	10 studies	76% ± 23%	Explore
type I pneumocyte	9 studies	72% ± 23%	Explore
type II pneumocyte	9 studies	82% ± 23%	Explore
IgA plasma cell	9 studies	75% ± 27%	Explore
hematopoietic stem cell	9 studies	92% ± 21%	Explore
club cell	8 studies	88% ± 19%	Explore
platelet	8 studies	58% ± 26%	Explore
abnormal cell	8 studies	77% ± 29%	Explore
neuron	8 studies	63% ± 27%	Explore
enterocyte	8 studies	67% ± 24%	Explore
microglial cell	8 studies	71% ± 26%	Explore
respiratory goblet cell	7 studies	81% ± 19%	Explore
mononuclear phagocyte	7 studies	85% ± 24%	Explore
epithelial cell of proximal tubule	7 studies	80% ± 21%	Explore
enteroendocrine cell	7 studies	84% ± 24%	Explore
retinal rod cell	7 studies	54% ± 25%	Explore
alveolar macrophage	6 studies	84% ± 25%	Explore
hematopoietic precursor cell	6 studies	80% ± 30%	Explore
ionocyte	6 studies	82% ± 22%	Explore
glutamatergic neuron	6 studies	33% ± 14%	Explore
kidney loop of Henle epithelial cell	6 studies	81% ± 17%	Explore
renal alpha-intercalated cell	6 studies	98% ± 2%	Explore
erythroblast	6 studies	74% ± 26%	Explore
intestinal crypt stem cell	6 studies	79% ± 27%	Explore
transit amplifying cell	6 studies	83% ± 22%	Explore
amacrine cell	6 studies	46% ± 23%	Explore
retinal ganglion cell	6 studies	58% ± 26%	Explore
precursor B cell	6 studies	98% ± 2%	Explore
brush cell	6 studies	78% ± 20%	Explore
immature B cell	6 studies	99% ± 2%	Explore
effector memory CD4-positive, alpha-beta T cell	6 studies	98% ± 3%	Explore
effector CD8-positive, alpha-beta T cell	6 studies	88% ± 23%	Explore
CD4-positive helper T cell	5 studies	94% ± 6%	Explore
central memory CD8-positive, alpha-beta T cell	5 studies	97% ± 3%	Explore
effector memory CD8-positive, alpha-beta T cell, terminally differentiated	5 studies	92% ± 7%	Explore
kidney distal convoluted tubule epithelial cell	5 studies	94% ± 5%	Explore
megakaryocyte	5 studies	76% ± 20%	Explore
OFF-bipolar cell	5 studies	64% ± 26%	Explore
ON-bipolar cell	5 studies	62% ± 25%	Explore
retinal cone cell	5 studies	61% ± 26%	Explore
lymphocyte	5 studies	82% ± 31%	Explore
glial cell	5 studies	76% ± 17%	Explore
T-helper 17 cell	5 studies	98% ± 2%	Explore
group 3 innate lymphoid cell	5 studies	97% ± 2%	Explore
Mueller cell	5 studies	65% ± 22%	Explore
double negative thymocyte	5 studies	98% ± 2%	Explore
effector CD4-positive, alpha-beta T cell	5 studies	93% ± 12%	Explore
granulocyte	5 studies	94% ± 5%	Explore
GABAergic neuron	5 studies	30% ± 11%	Explore
intermediate monocyte	5 studies	91% ± 11%	Explore
melanocyte	5 studies	72% ± 29%	Explore
interneuron	5 studies	42% ± 26%	Explore
CD4-positive, alpha-beta cytotoxic T cell	4 studies	83% ± 21%	Explore
deuterosomal cell	4 studies	73% ± 26%	Explore
duct epithelial cell	4 studies	97% ± 0%	Explore
exhausted T cell	4 studies	93% ± 9%	Explore
precursor cell	4 studies	84% ± 25%	Explore
pancreatic A cell	4 studies	94% ± 8%	Explore
type B pancreatic cell	4 studies	91% ± 12%	Explore
endothelial cell of sinusoid	4 studies	52% ± 31%	Explore
glomerular endothelial cell	4 studies	78% ± 14%	Explore
kidney connecting tubule epithelial cell	4 studies	87% ± 8%	Explore
podocyte	4 studies	88% ± 9%	Explore
oligodendrocyte	4 studies	35% ± 14%	Explore
GABAergic amacrine cell	4 studies	43% ± 15%	Explore
glycinergic amacrine cell	4 studies	47% ± 17%	Explore
pro-B cell	4 studies	99% ± 1%	Explore
neuroendocrine cell	4 studies	96% ± 3%	Explore
adventitial cell	4 studies	88% ± 15%	Explore
mucus secreting cell	4 studies	78% ± 30%	Explore
retina horizontal cell	4 studies	51% ± 18%	Explore
inflammatory macrophage	4 studies	79% ± 18%	Explore
acinar cell	4 studies	80% ± 26%	Explore
muscle cell	4 studies	58% ± 21%	Explore
germinal center B cell	4 studies	98% ± 1%	Explore
luminal hormone-sensing cell of mammary gland	4 studies	96% ± 6%	Explore
hepatocyte	4 studies	57% ± 35%	Explore
IgM plasma cell	4 studies	84% ± 17%	Explore
oligodendrocyte precursor cell	4 studies	50% ± 30%	Explore
T-helper 1 cell	4 studies	99% ± 1%	Explore
squamous epithelial cell	3 studies	59% ± 25%	Explore
pancreatic D cell	3 studies	97% ± 4%	Explore
renal beta-intercalated cell	3 studies	99% ± 1%	Explore
neural crest cell	3 studies	99% ± 1%	Explore
paneth cell	3 studies	90% ± 9%	Explore
retinal bipolar neuron	3 studies	54% ± 26%	Explore
renal principal cell	3 studies	89% ± 6%	Explore
thymocyte	3 studies	100% ± 0%	Explore
extravillous trophoblast	3 studies	100% ± 0%	Explore
placental villous trophoblast	3 studies	100% ± 0%	Explore
Schwann cell	3 studies	68% ± 36%	Explore
serous secreting cell	3 studies	86% ± 9%	Explore
tissue-resident macrophage	3 studies	71% ± 31%	Explore
follicular B cell	3 studies	98% ± 1%	Explore
intraepithelial lymphocyte	3 studies	96% ± 2%	Explore
rod bipolar cell	3 studies	70% ± 17%	Explore
myoepithelial cell	3 studies	99% ± 0%	Explore
cholangiocyte	3 studies	47% ± 35%	Explore
luminal cell of prostate epithelium	3 studies	100% ± 0%	Explore
retinal pigment epithelial cell	3 studies	47% ± 21%	Explore
pancreatic ductal cell	3 studies	94% ± 4%	Explore
granulocyte monocyte progenitor cell	3 studies	74% ± 33%	Explore
megakaryocyte-erythroid progenitor cell	3 studies	100% ± 0%	Explore
keratinocyte	3 studies	96% ± 5%	Explore
central memory CD4-positive, alpha-beta T cell	3 studies	99% ± 1%	Explore
double-positive, alpha-beta thymocyte	3 studies	99% ± 0%	Explore
progenitor cell of mammary luminal epithelium	3 studies	100% ± 0%	Explore

II. Expression across tissues

Name	Number of supported studies	Average coverage
lung	19 studies	81% ± 20%	Explore
peripheral blood	19 studies	92% ± 13%	Explore
intestine	14 studies	79% ± 25%	Explore
brain	11 studies	38% ± 22%	Explore
eye	10 studies	61% ± 23%	Explore
kidney	8 studies	80% ± 21%	Explore
liver	7 studies	63% ± 26%	Explore
bone marrow	6 studies	89% ± 10%	Explore
pancreas	5 studies	86% ± 18%	Explore
uterus	5 studies	92% ± 11%	Explore
lymph node	4 studies	98% ± 2%	Explore
placenta	4 studies	89% ± 18%	Explore
heart	4 studies	41% ± 20%	Explore
adipose	4 studies	43% ± 31%	Explore
esophagus	4 studies	71% ± 25%	Explore
prostate	4 studies	89% ± 18%	Explore
breast	4 studies	96% ± 4%	Explore
skin	3 studies	85% ± 16%	Explore
stomach	3 studies	64% ± 22%	Explore
thymus	3 studies	82% ± 25%	Explore

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
esophagus	100%	19786.56	1445 / 1445	100%	438.06	183 / 183
ovary	100%	40714.12	180 / 180	100%	708.43	430 / 430
pancreas	100%	19255.90	328 / 328	100%	538.10	178 / 178
prostate	100%	19382.84	245 / 245	100%	813.05	502 / 502
skin	100%	29043.83	1809 / 1809	100%	585.89	472 / 472
stomach	100%	17219.21	359 / 359	100%	625.76	286 / 286
uterus	100%	24653.71	170 / 170	100%	575.35	459 / 459
intestine	100%	20709.05	966 / 966	100%	712.67	526 / 527
bladder	100%	22585.71	21 / 21	100%	578.09	503 / 504
thymus	100%	15294.85	652 / 653	100%	620.69	604 / 605
breast	100%	26218.75	459 / 459	100%	610.35	1114 / 1118
kidney	100%	14913.17	89 / 89	100%	467.47	897 / 901
lung	99%	16399.72	575 / 578	100%	524.71	1155 / 1155
brain	99%	8977.01	2621 / 2642	100%	517.55	704 / 705
liver	99%	8063.81	223 / 226	100%	391.83	406 / 406
adrenal gland	100%	14030.39	258 / 258	98%	368.56	226 / 230
adipose	100%	24438.11	1204 / 1204	0%	0	0 / 0
eye	0%	0	0 / 0	100%	1068.01	80 / 80
lymph node	0%	0	0 / 0	100%	1227.40	29 / 29
muscle	100%	21817.68	803 / 803	0%	0	0 / 0
spleen	100%	20922.85	241 / 241	0%	0	0 / 0
tonsil	0%	0	0 / 0	100%	503.73	45 / 45
ureter	0%	0	0 / 0	100%	386.26	1 / 1
blood vessel	100%	20027.06	1334 / 1335	0%	0	0 / 0
heart	98%	12611.10	841 / 861	0%	0	0 / 0
peripheral blood	95%	17234.67	885 / 929	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0

III. Associated gene sets

GO_0033119	Biological process	negative regulation of RNA splicing
GO_0006412	Biological process	translation
GO_0042274	Biological process	ribosomal small subunit biogenesis
GO_0002181	Biological process	cytoplasmic translation
GO_0005730	Cellular component	nucleolus
GO_0022626	Cellular component	cytosolic ribosome
GO_0022627	Cellular component	cytosolic small ribosomal subunit
GO_0005840	Cellular component	ribosome
GO_0016020	Cellular component	membrane
GO_0032040	Cellular component	small-subunit processome
GO_0070062	Cellular component	extracellular exosome
GO_0005654	Cellular component	nucleoplasm
GO_0005925	Cellular component	focal adhesion
GO_0005829	Cellular component	cytosol
GO_0014069	Cellular component	postsynaptic density
GO_0005737	Cellular component	cytoplasm
GO_0005634	Cellular component	nucleus
GO_0048027	Molecular function	mRNA 5'-UTR binding
GO_0003729	Molecular function	mRNA binding
GO_0003735	Molecular function	structural constituent of ribosome
GO_0003723	Molecular function	RNA binding
GO_0070181	Molecular function	small ribosomal subunit rRNA binding
GO_0005515	Molecular function	protein binding

IV. Literature review

[source]

Gene name	RPS13
Protein name	Ribosomal protein S13 Small ribosomal subunit protein uS15 (40S ribosomal protein S13)
Synonyms
Description	FUNCTION: Component of the small ribosomal subunit. The ribosome is a large ribonucleoprotein complex responsible for the synthesis of proteins in the cell. Part of the small subunit (SSU) processome, first precursor of the small eukaryotic ribosomal subunit. During the assembly of the SSU processome in the nucleolus, many ribosome biogenesis factors, an RNA chaperone and ribosomal proteins associate with the nascent pre-rRNA and work in concert to generate RNA folding, modifications, rearrangements and cleavage as well as targeted degradation of pre-ribosomal RNA by the RNA exosome . .
Accessions	ENST00000228140.6 J3KMX5 P62277 ENST00000533969.1 E9PS50 ENST00000525634.6

RPS13 report

I. Expression across cell types

II. Expression across tissues

III. Associated gene sets

IV. Literature review