Name | Number of supported studies | Average coverage | |
---|---|---|---|
lung | 18 studies | 85% ± 17% | |
peripheral blood | 17 studies | 97% ± 6% | |
brain | 14 studies | 65% ± 25% | |
intestine | 12 studies | 95% ± 7% | |
kidney | 8 studies | 75% ± 30% | |
eye | 7 studies | 71% ± 25% | |
liver | 6 studies | 88% ± 8% | |
bone marrow | 5 studies | 97% ± 4% | |
heart | 5 studies | 39% ± 20% | |
lymph node | 4 studies | 99% ± 1% | |
breast | 4 studies | 97% ± 1% | |
uterus | 3 studies | 99% ± 1% | |
prostate | 3 studies | 100% ± 0% | |
esophagus | 3 studies | 90% ± 2% | |
skin | 3 studies | 97% ± 2% | |
adipose | 3 studies | 92% ± 6% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
adrenal gland | 100% | 1089009.92 | 257 / 258 | 100% | 39137.47 | 230 / 230 |
liver | 100% | 1223527.87 | 225 / 226 | 100% | 29151.71 | 406 / 406 |
brain | 100% | 1566074.64 | 2637 / 2642 | 100% | 29010.77 | 703 / 705 |
intestine | 99% | 895379.24 | 959 / 966 | 99% | 33300.96 | 524 / 527 |
esophagus | 99% | 654173.12 | 1425 / 1445 | 100% | 24242.58 | 183 / 183 |
prostate | 99% | 637732.86 | 242 / 245 | 100% | 29807.17 | 500 / 502 |
stomach | 99% | 789586.11 | 356 / 359 | 99% | 32253.17 | 283 / 286 |
breast | 99% | 561642.53 | 455 / 459 | 99% | 21375.12 | 1104 / 1118 |
kidney | 99% | 2011167.55 | 88 / 89 | 99% | 35127.42 | 891 / 901 |
skin | 98% | 457134.99 | 1778 / 1809 | 97% | 32473.41 | 460 / 472 |
bladder | 95% | 511870.24 | 20 / 21 | 98% | 30314.61 | 495 / 504 |
thymus | 93% | 424563.75 | 608 / 653 | 100% | 23596.93 | 602 / 605 |
pancreas | 92% | 311481.82 | 302 / 328 | 99% | 24161.32 | 177 / 178 |
lung | 88% | 337297.20 | 508 / 578 | 96% | 19603.29 | 1109 / 1155 |
uterus | 76% | 216914.73 | 130 / 170 | 99% | 21231.60 | 454 / 459 |
ovary | 54% | 144370.44 | 98 / 180 | 100% | 27294.97 | 430 / 430 |
eye | 0% | 0 | 0 / 0 | 100% | 40080.59 | 80 / 80 |
lymph node | 0% | 0 | 0 / 0 | 100% | 16222.75 | 29 / 29 |
tonsil | 0% | 0 | 0 / 0 | 100% | 14100.20 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 66466.33 | 1 / 1 |
heart | 100% | 1560941.25 | 859 / 861 | 0% | 0 | 0 / 0 |
muscle | 100% | 910287.53 | 800 / 803 | 0% | 0 | 0 / 0 |
adipose | 98% | 557177.54 | 1177 / 1204 | 0% | 0 | 0 / 0 |
spleen | 98% | 437346.44 | 235 / 241 | 0% | 0 | 0 / 0 |
blood vessel | 72% | 214642.76 | 965 / 1335 | 0% | 0 | 0 / 0 |
peripheral blood | 33% | 126903.32 | 311 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0042773 | Biological process | ATP synthesis coupled electron transport |
GO_1902600 | Biological process | proton transmembrane transport |
GO_0007595 | Biological process | lactation |
GO_0045333 | Biological process | cellular respiration |
GO_0001666 | Biological process | response to hypoxia |
GO_0006123 | Biological process | mitochondrial electron transport, cytochrome c to oxygen |
GO_0031966 | Cellular component | mitochondrial membrane |
GO_0045277 | Cellular component | respiratory chain complex IV |
GO_0005751 | Cellular component | mitochondrial respiratory chain complex IV |
GO_0016020 | Cellular component | membrane |
GO_0005743 | Cellular component | mitochondrial inner membrane |
GO_0005739 | Cellular component | mitochondrion |
GO_0005507 | Molecular function | copper ion binding |
GO_0004129 | Molecular function | cytochrome-c oxidase activity |
GO_0005515 | Molecular function | protein binding |
Gene name | MT-CO2 |
Protein name | Cytochrome c oxidase subunit 2 (EC 7.1.1.9) (Cytochrome c oxidase polypeptide II) |
Synonyms | COXII COX2 COII MTCO2 |
Description | FUNCTION: Component of the cytochrome c oxidase, the last enzyme in the mitochondrial electron transport chain which drives oxidative phosphorylation. The respiratory chain contains 3 multisubunit complexes succinate dehydrogenase (complex II, CII), ubiquinol-cytochrome c oxidoreductase (cytochrome b-c1 complex, complex III, CIII) and cytochrome c oxidase (complex IV, CIV), that cooperate to transfer electrons derived from NADH and succinate to molecular oxygen, creating an electrochemical gradient over the inner membrane that drives transmembrane transport and the ATP synthase. Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Electrons originating from reduced cytochrome c in the intermembrane space (IMS) are transferred via the dinuclear copper A center (CU(A)) of subunit 2 and heme A of subunit 1 to the active site in subunit 1, a binuclear center (BNC) formed by heme A3 and copper B (CU(B)). The BNC reduces molecular oxygen to 2 water molecules using 4 electrons from cytochrome c in the IMS and 4 protons from the mitochondrial matrix. . |
Accessions | P00403 ENST00000361739.1 |