HNRNPM | OmnibusX

I. Expression across cell types

Name	Number of supported studies	Average coverage
endothelial cell	44 studies	41% ± 16%	Explore
fibroblast	42 studies	33% ± 13%	Explore
B cell	38 studies	36% ± 11%	Explore
natural killer cell	38 studies	39% ± 13%	Explore
macrophage	36 studies	29% ± 11%	Explore
pericyte	34 studies	37% ± 15%	Explore
T cell	33 studies	34% ± 14%	Explore
CD8-positive, alpha-beta T cell	33 studies	35% ± 12%	Explore
CD4-positive, alpha-beta T cell	31 studies	35% ± 12%	Explore
smooth muscle cell	30 studies	36% ± 12%	Explore
conventional dendritic cell	26 studies	40% ± 15%	Explore
classical monocyte	23 studies	34% ± 13%	Explore
endothelial cell of lymphatic vessel	22 studies	35% ± 12%	Explore
basal cell	22 studies	38% ± 15%	Explore
regulatory T cell	22 studies	36% ± 9%	Explore
dendritic cell	21 studies	37% ± 22%	Explore
monocyte	21 studies	34% ± 12%	Explore
non-classical monocyte	21 studies	35% ± 14%	Explore
memory B cell	20 studies	34% ± 10%	Explore
epithelial cell	20 studies	37% ± 22%	Explore
mast cell	19 studies	31% ± 9%	Explore
plasmacytoid dendritic cell	19 studies	44% ± 13%	Explore
ciliated cell	19 studies	38% ± 15%	Explore
naive B cell	19 studies	31% ± 9%	Explore
mature NK T cell	19 studies	34% ± 10%	Explore
naive thymus-derived CD4-positive, alpha-beta T cell	17 studies	35% ± 11%	Explore
gamma-delta T cell	17 studies	40% ± 14%	Explore
myeloid cell	16 studies	31% ± 14%	Explore
CD16-positive, CD56-dim natural killer cell, human	15 studies	40% ± 11%	Explore
CD16-negative, CD56-bright natural killer cell, human	15 studies	36% ± 12%	Explore
myofibroblast cell	15 studies	40% ± 16%	Explore
capillary endothelial cell	14 studies	33% ± 11%	Explore
plasma cell	13 studies	34% ± 14%	Explore
naive thymus-derived CD8-positive, alpha-beta T cell	13 studies	40% ± 10%	Explore
connective tissue cell	13 studies	45% ± 15%	Explore
vein endothelial cell	13 studies	37% ± 11%	Explore
microglial cell	13 studies	33% ± 13%	Explore
oligodendrocyte precursor cell	13 studies	31% ± 15%	Explore
mucosal invariant T cell	13 studies	36% ± 12%	Explore
endothelial cell of vascular tree	13 studies	37% ± 11%	Explore
CD8-positive, alpha-beta memory T cell	12 studies	38% ± 11%	Explore
effector memory CD8-positive, alpha-beta T cell	12 studies	37% ± 15%	Explore
endothelial cell of artery	12 studies	31% ± 9%	Explore
astrocyte	12 studies	30% ± 12%	Explore
CD4-positive, alpha-beta memory T cell	11 studies	33% ± 9%	Explore
club cell	11 studies	29% ± 10%	Explore
oligodendrocyte	11 studies	29% ± 10%	Explore
type II pneumocyte	10 studies	27% ± 11%	Explore
plasmablast	10 studies	47% ± 23%	Explore
progenitor cell	10 studies	42% ± 17%	Explore
abnormal cell	10 studies	36% ± 15%	Explore
type I pneumocyte	9 studies	31% ± 10%	Explore
secretory cell	9 studies	33% ± 12%	Explore
leukocyte	9 studies	35% ± 12%	Explore
goblet cell	9 studies	34% ± 18%	Explore
mesothelial cell	9 studies	39% ± 15%	Explore
adipocyte	9 studies	24% ± 6%	Explore
effector CD8-positive, alpha-beta T cell	8 studies	38% ± 16%	Explore
neuron	8 studies	46% ± 16%	Explore
respiratory goblet cell	7 studies	29% ± 15%	Explore
glutamatergic neuron	7 studies	40% ± 20%	Explore
retinal rod cell	7 studies	35% ± 18%	Explore
interneuron	7 studies	33% ± 19%	Explore
precursor B cell	7 studies	49% ± 14%	Explore
brush cell	7 studies	39% ± 20%	Explore
T follicular helper cell	7 studies	33% ± 8%	Explore
alveolar macrophage	6 studies	23% ± 9%	Explore
hematopoietic precursor cell	6 studies	53% ± 26%	Explore
ionocyte	6 studies	27% ± 6%	Explore
effector CD4-positive, alpha-beta T cell	6 studies	35% ± 14%	Explore
mononuclear phagocyte	6 studies	35% ± 15%	Explore
transit amplifying cell	6 studies	36% ± 13%	Explore
hematopoietic stem cell	6 studies	48% ± 6%	Explore
lymphocyte	6 studies	40% ± 14%	Explore
innate lymphoid cell	6 studies	43% ± 9%	Explore
effector memory CD4-positive, alpha-beta T cell	6 studies	40% ± 14%	Explore
GABAergic neuron	6 studies	38% ± 16%	Explore
kidney loop of Henle epithelial cell	5 studies	23% ± 2%	Explore
enteroendocrine cell	5 studies	39% ± 14%	Explore
glial cell	5 studies	31% ± 23%	Explore
pro-B cell	5 studies	54% ± 13%	Explore
retinal cone cell	5 studies	42% ± 21%	Explore
adventitial cell	5 studies	22% ± 10%	Explore
hepatocyte	5 studies	42% ± 24%	Explore
granulocyte	5 studies	31% ± 12%	Explore
effector memory CD8-positive, alpha-beta T cell, terminally differentiated	5 studies	33% ± 12%	Explore
deuterosomal cell	4 studies	47% ± 4%	Explore
duct epithelial cell	4 studies	27% ± 8%	Explore
precursor cell	4 studies	46% ± 22%	Explore
exhausted T cell	4 studies	39% ± 10%	Explore
intestinal crypt stem cell	4 studies	31% ± 11%	Explore
amacrine cell	4 studies	40% ± 15%	Explore
retinal bipolar neuron	4 studies	46% ± 22%	Explore
erythroblast	4 studies	56% ± 26%	Explore
immature B cell	4 studies	43% ± 15%	Explore
retina horizontal cell	4 studies	42% ± 15%	Explore
retinal pigment epithelial cell	4 studies	41% ± 21%	Explore
cardiac muscle cell	4 studies	18% ± 2%	Explore
Mueller cell	4 studies	29% ± 4%	Explore
germinal center B cell	4 studies	39% ± 10%	Explore
CD4-positive helper T cell	4 studies	32% ± 12%	Explore
luminal hormone-sensing cell of mammary gland	4 studies	44% ± 7%	Explore
megakaryocyte-erythroid progenitor cell	4 studies	53% ± 26%	Explore
erythrocyte	4 studies	46% ± 21%	Explore
keratinocyte	4 studies	28% ± 5%	Explore
T-helper 17 cell	4 studies	37% ± 10%	Explore
double negative thymocyte	4 studies	52% ± 19%	Explore
hillock cell	3 studies	37% ± 10%	Explore
pancreatic A cell	3 studies	47% ± 5%	Explore
type B pancreatic cell	3 studies	30% ± 9%	Explore
glomerular endothelial cell	3 studies	28% ± 2%	Explore
kidney distal convoluted tubule epithelial cell	3 studies	59% ± 22%	Explore
enterocyte	3 studies	22% ± 5%	Explore
neural crest cell	3 studies	62% ± 11%	Explore
retinal ganglion cell	3 studies	42% ± 16%	Explore
granule cell	3 studies	24% ± 7%	Explore
ON-bipolar cell	3 studies	28% ± 9%	Explore
extravillous trophoblast	3 studies	32% ± 11%	Explore
placental villous trophoblast	3 studies	42% ± 16%	Explore
megakaryocyte	3 studies	23% ± 2%	Explore
squamous epithelial cell	3 studies	38% ± 22%	Explore
serous secreting cell	3 studies	23% ± 10%	Explore
tissue-resident macrophage	3 studies	29% ± 4%	Explore
intraepithelial lymphocyte	3 studies	41% ± 15%	Explore
rod bipolar cell	3 studies	46% ± 10%	Explore
intermediate monocyte	3 studies	45% ± 25%	Explore
muscle cell	3 studies	45% ± 11%	Explore
neural progenitor cell	3 studies	34% ± 20%	Explore
chondrocyte	3 studies	34% ± 16%	Explore
group 3 innate lymphoid cell	3 studies	47% ± 15%	Explore
Schwann cell	3 studies	32% ± 11%	Explore
melanocyte	3 studies	41% ± 13%	Explore
T-helper 1 cell	3 studies	41% ± 4%	Explore
central memory CD4-positive, alpha-beta T cell	3 studies	42% ± 8%	Explore
central memory CD8-positive, alpha-beta T cell	3 studies	39% ± 12%	Explore
myoepithelial cell	3 studies	43% ± 17%	Explore
progenitor cell of mammary luminal epithelium	3 studies	29% ± 3%	Explore
mucus secreting cell	3 studies	22% ± 4%	Explore

II. Expression across tissues

Name	Number of supported studies	Average coverage
lung	19 studies	34% ± 12%	Explore
peripheral blood	17 studies	41% ± 11%	Explore
brain	17 studies	30% ± 14%	Explore
intestine	10 studies	32% ± 16%	Explore
eye	9 studies	38% ± 15%	Explore
kidney	8 studies	30% ± 12%	Explore
liver	6 studies	41% ± 20%	Explore
lymph node	5 studies	36% ± 12%	Explore
bone marrow	4 studies	35% ± 12%	Explore
heart	4 studies	21% ± 5%	Explore
uterus	4 studies	44% ± 9%	Explore
breast	4 studies	36% ± 10%	Explore
prostate	4 studies	23% ± 3%	Explore
adipose	4 studies	27% ± 5%	Explore
pancreas	3 studies	40% ± 5%	Explore
placenta	3 studies	37% ± 12%	Explore
esophagus	3 studies	37% ± 26%	Explore
skin	3 studies	23% ± 5%	Explore

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
esophagus	100%	11872.08	1445 / 1445	100%	104.27	183 / 183
stomach	100%	9090.09	359 / 359	100%	117.35	286 / 286
uterus	100%	14782.71	170 / 170	100%	177.52	459 / 459
intestine	100%	12394.28	966 / 966	100%	140.40	526 / 527
bladder	100%	12323.67	21 / 21	100%	148.21	503 / 504
skin	100%	14497.21	1809 / 1809	100%	142.93	471 / 472
pancreas	100%	6005.43	327 / 328	100%	106.05	178 / 178
lung	100%	12621.97	577 / 578	100%	120.45	1153 / 1155
brain	100%	8722.53	2636 / 2642	100%	130.59	704 / 705
prostate	100%	11812.16	245 / 245	100%	126.80	500 / 502
ovary	100%	15210.48	180 / 180	100%	69.95	428 / 430
thymus	100%	13785.86	653 / 653	100%	127.65	602 / 605
breast	100%	12826.82	459 / 459	99%	149.93	1112 / 1118
liver	100%	6883.58	226 / 226	99%	76.88	403 / 406
kidney	100%	9509.02	89 / 89	98%	79.37	879 / 901
adrenal gland	100%	10021.78	258 / 258	95%	81.45	219 / 230
adipose	100%	11987.53	1204 / 1204	0%	0	0 / 0
blood vessel	100%	11707.68	1335 / 1335	0%	0	0 / 0
lymph node	0%	0	0 / 0	100%	244.53	29 / 29
muscle	100%	9533.07	803 / 803	0%	0	0 / 0
spleen	100%	14771.90	241 / 241	0%	0	0 / 0
tonsil	0%	0	0 / 0	100%	198.80	45 / 45
ureter	0%	0	0 / 0	100%	66.06	1 / 1
heart	99%	7511.11	852 / 861	0%	0	0 / 0
eye	0%	0	0 / 0	99%	99.27	79 / 80
peripheral blood	96%	9055.40	895 / 929	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0

III. Associated gene sets

GO_0000398	Biological process	mRNA splicing, via spliceosome
GO_0000380	Biological process	alternative mRNA splicing, via spliceosome
GO_0042382	Cellular component	paraspeckles
GO_0016363	Cellular component	nuclear matrix
GO_0005730	Cellular component	nucleolus
GO_0070062	Cellular component	extracellular exosome
GO_0071013	Cellular component	catalytic step 2 spliceosome
GO_0005654	Cellular component	nucleoplasm
GO_0045202	Cellular component	synapse
GO_0062023	Cellular component	collagen-containing extracellular matrix
GO_0005681	Cellular component	spliceosomal complex
GO_0016020	Cellular component	membrane
GO_0005634	Cellular component	nucleus
GO_0019904	Molecular function	protein domain specific binding
GO_0005515	Molecular function	protein binding
GO_0003729	Molecular function	mRNA binding
GO_0003723	Molecular function	RNA binding

IV. Literature review

[source]

Gene name	HNRNPM
Protein name	Heterogeneous nuclear ribonucleoprotein M (hnRNP M) Heterogeneous nuclear ribonucleoprotein M
Synonyms	HNRPM NAGR1
Description	FUNCTION: Pre-mRNA binding protein in vivo, binds avidly to poly(G) and poly(U) RNA homopolymers in vitro. Involved in splicing. Acts as a receptor for carcinoembryonic antigen in Kupffer cells, may initiate a series of signaling events leading to tyrosine phosphorylation of proteins and induction of IL-1 alpha, IL-6, IL-10 and tumor necrosis factor alpha cytokines.
Accessions	M0R0Y6 M0R019 ENST00000598367.5 M0QY96 ENST00000598999.1 M0QYQ7 M0R2I7 M0R0N3 P52272 ENST00000325495.9 [P52272-1] M0QZM1 ENST00000596295.1 ENST00000597270.1 ENST00000600806.5 M0R2T0 ENST00000594907.5 ENST00000601645.5 ENST00000348943.7 [P52272-2] ENST00000596984.5 M0QYL3 ENST00000600092.5

HNRNPM report

I. Expression across cell types

II. Expression across tissues

III. Associated gene sets

IV. Literature review