Name | Number of supported studies | Average coverage | |
---|---|---|---|
peripheral blood | 20 studies | 70% ± 15% | |
lung | 18 studies | 57% ± 16% | |
intestine | 12 studies | 55% ± 20% | |
kidney | 9 studies | 57% ± 16% | |
eye | 9 studies | 37% ± 17% | |
brain | 9 studies | 31% ± 10% | |
bone marrow | 6 studies | 44% ± 19% | |
lymph node | 6 studies | 65% ± 15% | |
liver | 6 studies | 53% ± 22% | |
pancreas | 5 studies | 53% ± 20% | |
uterus | 5 studies | 59% ± 22% | |
placenta | 4 studies | 52% ± 21% | |
prostate | 4 studies | 47% ± 20% | |
breast | 4 studies | 67% ± 7% | |
heart | 3 studies | 31% ± 13% | |
adipose | 3 studies | 34% ± 22% | |
adrenal gland | 3 studies | 49% ± 18% | |
esophagus | 3 studies | 58% ± 27% | |
thymus | 3 studies | 68% ± 30% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 8192.30 | 1445 / 1445 | 100% | 134.02 | 183 / 183 |
ovary | 100% | 7234.05 | 180 / 180 | 100% | 226.46 | 430 / 430 |
pancreas | 100% | 4963.67 | 328 / 328 | 100% | 194.35 | 178 / 178 |
skin | 100% | 8374.99 | 1809 / 1809 | 100% | 238.56 | 472 / 472 |
uterus | 100% | 7017.69 | 170 / 170 | 100% | 272.74 | 459 / 459 |
thymus | 100% | 6561.73 | 653 / 653 | 100% | 228.57 | 604 / 605 |
prostate | 100% | 6359.87 | 245 / 245 | 100% | 196.06 | 501 / 502 |
kidney | 100% | 8737.82 | 89 / 89 | 100% | 185.65 | 899 / 901 |
brain | 100% | 4923.00 | 2633 / 2642 | 100% | 151.18 | 705 / 705 |
stomach | 100% | 7173.40 | 359 / 359 | 100% | 193.13 | 285 / 286 |
intestine | 100% | 9316.81 | 966 / 966 | 100% | 231.14 | 525 / 527 |
adrenal gland | 100% | 5919.16 | 258 / 258 | 100% | 195.37 | 229 / 230 |
liver | 100% | 3535.43 | 225 / 226 | 100% | 165.91 | 406 / 406 |
breast | 100% | 8187.03 | 459 / 459 | 100% | 188.13 | 1113 / 1118 |
lung | 99% | 6217.15 | 575 / 578 | 100% | 189.67 | 1151 / 1155 |
bladder | 100% | 7829.24 | 21 / 21 | 99% | 227.15 | 499 / 504 |
adipose | 100% | 8114.38 | 1204 / 1204 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 100% | 452.25 | 80 / 80 |
lymph node | 0% | 0 | 0 / 0 | 100% | 424.91 | 29 / 29 |
muscle | 100% | 13029.35 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 7665.45 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 259.04 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 102.74 | 1 / 1 |
blood vessel | 100% | 7021.51 | 1334 / 1335 | 0% | 0 | 0 / 0 |
peripheral blood | 99% | 6823.64 | 922 / 929 | 0% | 0 | 0 / 0 |
heart | 99% | 11843.87 | 852 / 861 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0001732 | Biological process | formation of cytoplasmic translation initiation complex |
GO_0006446 | Biological process | regulation of translational initiation |
GO_0006413 | Biological process | translational initiation |
GO_0005852 | Cellular component | eukaryotic translation initiation factor 3 complex |
GO_0033290 | Cellular component | eukaryotic 48S preinitiation complex |
GO_0005829 | Cellular component | cytosol |
GO_0016282 | Cellular component | eukaryotic 43S preinitiation complex |
GO_0016020 | Cellular component | membrane |
GO_0005634 | Cellular component | nucleus |
GO_0043022 | Molecular function | ribosome binding |
GO_0003743 | Molecular function | translation initiation factor activity |
GO_0005515 | Molecular function | protein binding |
GO_0003723 | Molecular function | RNA binding |
Gene name | EIF3K |
Protein name | Eukaryotic translation initiation factor 3 subunit K (eIF3k) (Eukaryotic translation initiation factor 3 subunit 12) (Muscle-specific gene M9 protein) (PLAC-24) (eIF-3 p25) (eIF-3 p28) Eukaryotic translation initiation factor 3 subunit K (eIF3k) (Eukaryotic translation initiation factor 3 subunit 12) (eIF-3 p25) Eukaryotic translation initiation factor 3 subunit K Eukaryotic translation initiation factor 3 subunit K (cDNA FLJ55131, highly similar to Eukaryotic translation initiation factor 3 subunit 12) |
Synonyms | HSPC029 hCG_2040051 ARG134 MSTP001 PTD001 EIF3S12 |
Description | FUNCTION: Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is required for several steps in the initiation of protein synthesis . The eIF-3 complex associates with the 40S ribosome and facilitates the recruitment of eIF-1, eIF-1A, eIF-2:GTP:methionyl-tRNAi and eIF-5 to form the 43S pre-initiation complex (43S PIC). The eIF-3 complex stimulates mRNA recruitment to the 43S PIC and scanning of the mRNA for AUG recognition. The eIF-3 complex is also required for disassembly and recycling of post-termination ribosomal complexes and subsequently prevents premature joining of the 40S and 60S ribosomal subunits prior to initiation . The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation, including cell cycling, differentiation and apoptosis, and uses different modes of RNA stem-loop binding to exert either translational activation or repression . . FUNCTION: Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is required for several steps in the initiation of protein synthesis. The eIF-3 complex associates with the 40S ribosome and facilitates the recruitment of eIF-1, eIF-1A, eIF-2:GTP:methionyl-tRNAi and eIF-5 to form the 43S pre-initiation complex (43S PIC). The eIF-3 complex stimulates mRNA recruitment to the 43S PIC and scanning of the mRNA for AUG recognition. The eIF-3 complex is also required for disassembly and recycling of post-termination ribosomal complexes and subsequently prevents premature joining of the 40S and 60S ribosomal subunits prior to initiation. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation, including cell cycling, differentiation and apoptosis, and uses different modes of RNA stem-loop binding to exert either translational activation or repression. . FUNCTION: Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is required for several steps in the initiation of protein synthesis. The eIF-3 complex associates with the 40S ribosome and facilitates the recruitment of eIF-1, eIF-1A, eIF-2:GTP:methionyl-tRNAi and eIF-5 to form the 43S pre-initiation complex (43S PIC). The eIF-3 complex stimulates mRNA recruitment to the 43S PIC and scanning of the mRNA for AUG recognition. The eIF-3 complex is also required for disassembly and recycling of post-termination ribosomal complexes and subsequently prevents premature joining of the 40S and 60S ribosomal subunits prior to initiation. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation, including cell cycling, differentiation and apoptosis, and uses different modes of RNA stem-loop binding to exert either translational activation or repression. . FUNCTION: Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is required for several steps in the initiation of protein synthesis. The eIF-3 complex associates with the 40S ribosome and facilitates the recruitment of eIF-1, eIF-1A, eIF-2:GTP:methionyl-tRNAi and eIF-5 to form the 43S pre-initiation complex (43S PIC). The eIF-3 complex stimulates mRNA recruitment to the 43S PIC and scanning of the mRNA for AUG recognition. The eIF-3 complex is also required for disassembly and recycling of post-termination ribosomal complexes and subsequently prevents premature joining of the 40S and 60S ribosomal subunits prior to initiation. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation, including cell cycling, differentiation and apoptosis, and uses different modes of RNA stem-loop binding to exert either translational activation or repression. . FUNCTION: Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is required for several steps in the initiation of protein synthesis. The eIF-3 complex associates with the 40S ribosome and facilitates the recruitment of eIF-1, eIF-1A, eIF-2:GTP:methionyl-tRNAi and eIF-5 to form the 43S pre-initiation complex (43S PIC). The eIF-3 complex stimulates mRNA recruitment to the 43S PIC and scanning of the mRNA for AUG recognition. The eIF-3 complex is also required for disassembly and recycling of post-termination ribosomal complexes and subsequently prevents premature joining of the 40S and 60S ribosomal subunits prior to initiation. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation, including cell cycling, differentiation and apoptosis, and uses different modes of RNA stem-loop binding to exert either translational activation or repression. . |
Accessions | ENST00000545173.6 [Q9UBQ5-2] ENST00000593149.5 K7ERF1 ENST00000635417.1 [Q9UBQ5-2] ENST00000248342.9 [Q9UBQ5-1] U3LUI4 ENST00000614624.4 Q9UBQ5 B4DQ48 ENST00000591409.5 ENST00000538434.5 K7ES31 ENST00000588934.5 ENST00000592558.1 ENST00000635567.2 [Q9UBQ5-1] K7EQM4 K7EK53 B4DVD7 A0A087WVB9 |