Name | Number of supported studies | Average coverage | |
---|---|---|---|
peripheral blood | 18 studies | 40% ± 11% | |
lung | 17 studies | 45% ± 15% | |
brain | 10 studies | 29% ± 13% | |
intestine | 9 studies | 30% ± 14% | |
kidney | 9 studies | 43% ± 11% | |
eye | 8 studies | 34% ± 16% | |
placenta | 5 studies | 29% ± 14% | |
bone marrow | 5 studies | 27% ± 11% | |
liver | 5 studies | 35% ± 20% | |
lymph node | 5 studies | 42% ± 19% | |
pancreas | 4 studies | 62% ± 15% | |
uterus | 4 studies | 44% ± 17% | |
prostate | 4 studies | 27% ± 9% | |
breast | 4 studies | 34% ± 6% | |
adrenal gland | 3 studies | 29% ± 4% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
adrenal gland | 100% | 3957.77 | 258 / 258 | 100% | 274.50 | 230 / 230 |
brain | 100% | 5700.46 | 2642 / 2642 | 100% | 352.00 | 705 / 705 |
ovary | 100% | 2164.01 | 180 / 180 | 100% | 369.27 | 430 / 430 |
uterus | 100% | 2390.50 | 170 / 170 | 100% | 301.32 | 459 / 459 |
skin | 100% | 4060.15 | 1808 / 1809 | 100% | 461.32 | 472 / 472 |
esophagus | 100% | 3468.68 | 1444 / 1445 | 100% | 196.36 | 183 / 183 |
thymus | 100% | 2332.79 | 652 / 653 | 100% | 244.97 | 605 / 605 |
intestine | 100% | 2503.72 | 966 / 966 | 100% | 271.60 | 525 / 527 |
kidney | 100% | 6686.53 | 89 / 89 | 99% | 378.38 | 895 / 901 |
stomach | 100% | 2312.63 | 359 / 359 | 99% | 239.21 | 284 / 286 |
prostate | 100% | 2752.76 | 245 / 245 | 99% | 233.86 | 498 / 502 |
lung | 100% | 3753.17 | 578 / 578 | 99% | 264.51 | 1143 / 1155 |
breast | 100% | 3203.37 | 459 / 459 | 99% | 266.98 | 1105 / 1118 |
bladder | 100% | 2880.48 | 21 / 21 | 99% | 301.80 | 498 / 504 |
pancreas | 96% | 1279.98 | 316 / 328 | 99% | 232.11 | 176 / 178 |
liver | 87% | 1121.85 | 197 / 226 | 99% | 149.76 | 400 / 406 |
adipose | 100% | 3325.59 | 1204 / 1204 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 100% | 299.57 | 80 / 80 |
lymph node | 0% | 0 | 0 / 0 | 100% | 384.25 | 29 / 29 |
spleen | 100% | 3006.15 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 225.55 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 302.10 | 1 / 1 |
blood vessel | 100% | 2824.27 | 1332 / 1335 | 0% | 0 | 0 / 0 |
muscle | 100% | 2431.93 | 800 / 803 | 0% | 0 | 0 / 0 |
peripheral blood | 99% | 3300.16 | 922 / 929 | 0% | 0 | 0 / 0 |
heart | 98% | 2882.67 | 846 / 861 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0048388 | Biological process | endosomal lumen acidification |
GO_0007042 | Biological process | lysosomal lumen acidification |
GO_0051452 | Biological process | intracellular pH reduction |
GO_0097401 | Biological process | synaptic vesicle lumen acidification |
GO_0007035 | Biological process | vacuolar acidification |
GO_0061795 | Biological process | Golgi lumen acidification |
GO_1902600 | Biological process | proton transmembrane transport |
GO_0005886 | Cellular component | plasma membrane |
GO_0016020 | Cellular component | membrane |
GO_1902495 | Cellular component | transmembrane transporter complex |
GO_0030672 | Cellular component | synaptic vesicle membrane |
GO_0070062 | Cellular component | extracellular exosome |
GO_0033176 | Cellular component | proton-transporting V-type ATPase complex |
GO_0000221 | Cellular component | vacuolar proton-transporting V-type ATPase, V1 domain |
GO_0000139 | Cellular component | Golgi membrane |
GO_0005829 | Cellular component | cytosol |
GO_0010008 | Cellular component | endosome membrane |
GO_0016471 | Cellular component | vacuolar proton-transporting V-type ATPase complex |
GO_0005765 | Cellular component | lysosomal membrane |
GO_0030665 | Cellular component | clathrin-coated vesicle membrane |
GO_0046961 | Molecular function | proton-transporting ATPase activity, rotational mechanism |
GO_0015078 | Molecular function | proton transmembrane transporter activity |
GO_0042625 | Molecular function | ATPase-coupled ion transmembrane transporter activity |
GO_0005515 | Molecular function | protein binding |
Gene name | ATP6V1F |
Protein name | V-type proton ATPase subunit F V-type proton ATPase subunit F (V-ATPase subunit F) (V-ATPase 14 kDa subunit) (Vacuolar proton pump subunit F) |
Synonyms | VATF hCG_41657 tcag7.419 ATP6S14 |
Description | FUNCTION: Subunit of the V1 complex of vacuolar(H+)-ATPase (V-ATPase), a multisubunit enzyme composed of a peripheral complex (V1) that hydrolyzes ATP and a membrane integral complex (V0) that translocates protons . V-ATPase is responsible for acidifying and maintaining the pH of intracellular compartments and in some cell types, is targeted to the plasma membrane, where it is responsible for acidifying the extracellular environment (By similarity). . FUNCTION: Subunit of the V1 complex of vacuolar(H+)-ATPase (V-ATPase), a multisubunit enzyme composed of a peripheral complex (V1) that hydrolyzes ATP and a membrane integral complex (V0) that translocates protons. V-ATPase is responsible for acidifying and maintaining the pH of intracellular compartments. . |
Accessions | Q16864 ENST00000249289.5 [Q16864-1] ENST00000492758.1 [Q16864-2] A4D1K0 |