Name | Number of supported studies | Average coverage | |
---|---|---|---|
peripheral blood | 20 studies | 45% ± 13% | |
lung | 18 studies | 55% ± 18% | |
intestine | 13 studies | 46% ± 22% | |
kidney | 9 studies | 48% ± 15% | |
brain | 9 studies | 31% ± 11% | |
eye | 8 studies | 34% ± 14% | |
bone marrow | 7 studies | 37% ± 13% | |
liver | 7 studies | 43% ± 21% | |
lymph node | 6 studies | 49% ± 15% | |
uterus | 5 studies | 56% ± 24% | |
pancreas | 4 studies | 68% ± 20% | |
placenta | 4 studies | 64% ± 21% | |
prostate | 4 studies | 39% ± 9% | |
breast | 4 studies | 50% ± 10% | |
adrenal gland | 3 studies | 48% ± 6% | |
esophagus | 3 studies | 54% ± 28% | |
skin | 3 studies | 38% ± 9% | |
thymus | 3 studies | 60% ± 18% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 1792.67 | 1445 / 1445 | 100% | 31.95 | 183 / 183 |
ovary | 100% | 2949.01 | 180 / 180 | 100% | 54.92 | 430 / 430 |
pancreas | 100% | 3047.28 | 328 / 328 | 100% | 46.86 | 178 / 178 |
skin | 100% | 2155.37 | 1809 / 1809 | 100% | 49.56 | 472 / 472 |
stomach | 100% | 2155.99 | 359 / 359 | 100% | 47.14 | 286 / 286 |
uterus | 100% | 2403.08 | 170 / 170 | 100% | 55.95 | 459 / 459 |
brain | 100% | 1519.76 | 2639 / 2642 | 100% | 40.43 | 705 / 705 |
thymus | 100% | 2282.94 | 653 / 653 | 100% | 49.71 | 604 / 605 |
lung | 100% | 2269.94 | 577 / 578 | 100% | 48.44 | 1155 / 1155 |
intestine | 100% | 2006.89 | 966 / 966 | 100% | 53.10 | 526 / 527 |
kidney | 100% | 2076.91 | 89 / 89 | 100% | 32.59 | 899 / 901 |
bladder | 100% | 2086.67 | 21 / 21 | 100% | 58.56 | 502 / 504 |
prostate | 100% | 2168.30 | 245 / 245 | 100% | 59.67 | 500 / 502 |
adrenal gland | 100% | 2944.97 | 258 / 258 | 100% | 37.72 | 229 / 230 |
liver | 100% | 1716.36 | 225 / 226 | 100% | 41.44 | 406 / 406 |
breast | 100% | 2154.62 | 459 / 459 | 100% | 49.22 | 1113 / 1118 |
adipose | 100% | 1996.85 | 1204 / 1204 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 100% | 70.39 | 80 / 80 |
lymph node | 0% | 0 | 0 / 0 | 100% | 59.81 | 29 / 29 |
spleen | 100% | 2371.11 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 40.86 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 63.45 | 1 / 1 |
blood vessel | 100% | 1961.69 | 1333 / 1335 | 0% | 0 | 0 / 0 |
muscle | 99% | 1613.56 | 798 / 803 | 0% | 0 | 0 / 0 |
heart | 99% | 2038.06 | 855 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 98% | 1859.21 | 908 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0006487 | Biological process | protein N-linked glycosylation |
GO_0006954 | Biological process | inflammatory response |
GO_1904019 | Biological process | epithelial cell apoptotic process |
GO_0034976 | Biological process | response to endoplasmic reticulum stress |
GO_0005737 | Cellular component | cytoplasm |
GO_0032991 | Cellular component | protein-containing complex |
GO_0005783 | Cellular component | endoplasmic reticulum |
GO_0043227 | Cellular component | membrane-bounded organelle |
GO_0008250 | Cellular component | oligosaccharyltransferase complex |
GO_0034998 | Cellular component | oligosaccharyltransferase I complex |
GO_0016020 | Cellular component | membrane |
GO_0005789 | Cellular component | endoplasmic reticulum membrane |
GO_0062062 | Molecular function | oligosaccharyltransferase complex binding |
GO_0005515 | Molecular function | protein binding |
Gene name | TMEM258 |
Protein name | Transmembrane protein 258 (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit TMEM258) (Oligosaccharyl transferase subunit TMEM258) Transmembrane protein 258 (Dolichyl-diphosphooligosaccharide-protein glycosyltransferase subunit TMEM258) |
Synonyms | HSPC005 C11orf10 |
Description | FUNCTION: Subunit of the oligosaccharyl transferase (OST) complex that catalyzes the initial transfer of a defined glycan (Glc(3)Man(9)GlcNAc(2) in eukaryotes) from the lipid carrier dolichol-pyrophosphate to an asparagine residue within an Asn-X-Ser/Thr consensus motif in nascent polypeptide chains, the first step in protein N-glycosylation . N-glycosylation occurs cotranslationally and the complex associates with the Sec61 complex at the channel-forming translocon complex that mediates protein translocation across the endoplasmic reticulum (ER). All subunits are required for a maximal enzyme activity . Involved in ER homeostasis in the colonic epithelium (By similarity). . FUNCTION: Subunit of the oligosaccharyl transferase (OST) complex that catalyzes the initial transfer of a defined glycan (Glc(3)Man(9)GlcNAc(2) in eukaryotes) from the lipid carrier dolichol-pyrophosphate to an asparagine residue within an Asn-X-Ser/Thr consensus motif in nascent polypeptide chains, the first step in protein N-glycosylation. N-glycosylation occurs cotranslationally and the complex associates with the Sec61 complex at the channel-forming translocon complex that mediates protein translocation across the endoplasmic reticulum (ER). All subunits are required for a maximal enzyme activity. . FUNCTION: Subunit of the oligosaccharyl transferase (OST) complex that catalyzes the initial transfer of a defined glycan (Glc(3)Man(9)GlcNAc(2) in eukaryotes) from the lipid carrier dolichol-pyrophosphate to an asparagine residue within an Asn-X-Ser/Thr consensus motif in nascent polypeptide chains, the first step in protein N-glycosylation. N-glycosylation occurs cotranslationally and the complex associates with the Sec61 complex at the channel-forming translocon complex that mediates protein translocation across the endoplasmic reticulum (ER). All subunits are required for a maximal enzyme activity. . |
Accessions | ENST00000257262.12 ENST00000535297.1 F5GWH5 ENST00000545210.5 ENST00000543510.1 ENST00000537328.6 P61165 F5H7Z5 ENST00000541893.5 |