SRSF11 | OmnibusX

I. Expression across cell types

Name	Number of supported studies	Average coverage
endothelial cell	49 studies	45% ± 16%	Explore
fibroblast	45 studies	46% ± 14%	Explore
B cell	42 studies	40% ± 12%	Explore
natural killer cell	41 studies	41% ± 13%	Explore
T cell	37 studies	40% ± 13%	Explore
macrophage	36 studies	35% ± 13%	Explore
CD8-positive, alpha-beta T cell	34 studies	40% ± 14%	Explore
pericyte	33 studies	43% ± 14%	Explore
CD4-positive, alpha-beta T cell	32 studies	42% ± 12%	Explore
smooth muscle cell	31 studies	41% ± 12%	Explore
conventional dendritic cell	28 studies	37% ± 16%	Explore
regulatory T cell	26 studies	43% ± 12%	Explore
endothelial cell of lymphatic vessel	25 studies	44% ± 12%	Explore
basal cell	24 studies	43% ± 18%	Explore
mast cell	23 studies	33% ± 15%	Explore
epithelial cell	23 studies	45% ± 22%	Explore
classical monocyte	23 studies	33% ± 13%	Explore
plasmacytoid dendritic cell	21 studies	44% ± 12%	Explore
non-classical monocyte	21 studies	33% ± 13%	Explore
dendritic cell	20 studies	42% ± 19%	Explore
monocyte	20 studies	34% ± 10%	Explore
memory B cell	20 studies	41% ± 9%	Explore
naive B cell	20 studies	37% ± 12%	Explore
astrocyte	20 studies	38% ± 15%	Explore
mature NK T cell	19 studies	40% ± 10%	Explore
ciliated cell	19 studies	42% ± 16%	Explore
gamma-delta T cell	18 studies	43% ± 15%	Explore
naive thymus-derived CD4-positive, alpha-beta T cell	18 studies	41% ± 13%	Explore
connective tissue cell	18 studies	47% ± 18%	Explore
oligodendrocyte	17 studies	44% ± 17%	Explore
oligodendrocyte precursor cell	17 studies	45% ± 18%	Explore
CD16-negative, CD56-bright natural killer cell, human	16 studies	44% ± 13%	Explore
CD16-positive, CD56-dim natural killer cell, human	16 studies	47% ± 12%	Explore
mucosal invariant T cell	15 studies	38% ± 10%	Explore
naive thymus-derived CD8-positive, alpha-beta T cell	15 studies	43% ± 14%	Explore
plasma cell	15 studies	36% ± 12%	Explore
capillary endothelial cell	15 studies	35% ± 12%	Explore
myofibroblast cell	15 studies	49% ± 15%	Explore
microglial cell	15 studies	42% ± 12%	Explore
endothelial cell of vascular tree	14 studies	37% ± 10%	Explore
effector memory CD8-positive, alpha-beta T cell	13 studies	42% ± 13%	Explore
CD4-positive, alpha-beta memory T cell	13 studies	47% ± 13%	Explore
CD8-positive, alpha-beta memory T cell	13 studies	47% ± 12%	Explore
glutamatergic neuron	13 studies	53% ± 25%	Explore
endothelial cell of artery	13 studies	40% ± 11%	Explore
vein endothelial cell	13 studies	41% ± 14%	Explore
myeloid cell	13 studies	37% ± 13%	Explore
type I pneumocyte	12 studies	48% ± 13%	Explore
type II pneumocyte	12 studies	40% ± 13%	Explore
secretory cell	12 studies	43% ± 12%	Explore
club cell	11 studies	40% ± 13%	Explore
leukocyte	11 studies	39% ± 11%	Explore
GABAergic neuron	11 studies	51% ± 23%	Explore
progenitor cell	11 studies	47% ± 16%	Explore
neuron	11 studies	51% ± 20%	Explore
mesothelial cell	11 studies	52% ± 19%	Explore
innate lymphoid cell	10 studies	42% ± 12%	Explore
plasmablast	10 studies	51% ± 24%	Explore
abnormal cell	10 studies	45% ± 15%	Explore
goblet cell	10 studies	37% ± 22%	Explore
adipocyte	9 studies	60% ± 14%	Explore
alveolar macrophage	8 studies	28% ± 14%	Explore
respiratory goblet cell	8 studies	40% ± 17%	Explore
amacrine cell	8 studies	43% ± 13%	Explore
retinal rod cell	8 studies	31% ± 7%	Explore
effector CD8-positive, alpha-beta T cell	7 studies	44% ± 15%	Explore
mononuclear phagocyte	7 studies	36% ± 14%	Explore
kidney loop of Henle epithelial cell	7 studies	29% ± 9%	Explore
interneuron	7 studies	53% ± 27%	Explore
retinal ganglion cell	7 studies	48% ± 21%	Explore
hematopoietic stem cell	7 studies	51% ± 16%	Explore
precursor B cell	7 studies	53% ± 14%	Explore
immature B cell	7 studies	48% ± 11%	Explore
T follicular helper cell	7 studies	41% ± 8%	Explore
effector memory CD8-positive, alpha-beta T cell, terminally differentiated	6 studies	32% ± 9%	Explore
ionocyte	6 studies	38% ± 10%	Explore
effector CD4-positive, alpha-beta T cell	6 studies	43% ± 13%	Explore
kidney distal convoluted tubule epithelial cell	6 studies	45% ± 15%	Explore
epithelial cell of proximal tubule	6 studies	28% ± 14%	Explore
transit amplifying cell	6 studies	36% ± 26%	Explore
lymphocyte	6 studies	48% ± 15%	Explore
retina horizontal cell	6 studies	43% ± 10%	Explore
retinal cone cell	6 studies	37% ± 14%	Explore
mucus secreting cell	6 studies	31% ± 9%	Explore
Mueller cell	6 studies	35% ± 8%	Explore
effector memory CD4-positive, alpha-beta T cell	6 studies	49% ± 11%	Explore
CD4-positive helper T cell	5 studies	33% ± 15%	Explore
central memory CD8-positive, alpha-beta T cell	5 studies	37% ± 14%	Explore
hematopoietic precursor cell	5 studies	65% ± 14%	Explore
exhausted T cell	5 studies	53% ± 11%	Explore
renal alpha-intercalated cell	5 studies	37% ± 16%	Explore
enterocyte	5 studies	27% ± 10%	Explore
enteroendocrine cell	5 studies	47% ± 15%	Explore
retinal bipolar neuron	5 studies	38% ± 10%	Explore
glial cell	5 studies	40% ± 18%	Explore
OFF-bipolar cell	5 studies	32% ± 10%	Explore
ON-bipolar cell	5 studies	32% ± 11%	Explore
erythroblast	5 studies	51% ± 27%	Explore
pro-B cell	5 studies	61% ± 14%	Explore
brush cell	5 studies	36% ± 12%	Explore
adventitial cell	5 studies	37% ± 10%	Explore
cardiac muscle cell	5 studies	32% ± 1%	Explore
muscle cell	5 studies	41% ± 18%	Explore
myoepithelial cell	5 studies	44% ± 9%	Explore
hepatocyte	5 studies	62% ± 25%	Explore
granulocyte	5 studies	36% ± 10%	Explore
erythrocyte	5 studies	42% ± 17%	Explore
deuterosomal cell	4 studies	38% ± 12%	Explore
duct epithelial cell	4 studies	33% ± 16%	Explore
precursor cell	4 studies	55% ± 18%	Explore
platelet	4 studies	19% ± 2%	Explore
pancreatic A cell	4 studies	64% ± 17%	Explore
glomerular endothelial cell	4 studies	36% ± 9%	Explore
intestinal crypt stem cell	4 studies	31% ± 8%	Explore
granule cell	4 studies	42% ± 11%	Explore
Schwann cell	4 studies	51% ± 17%	Explore
retinal pigment epithelial cell	4 studies	47% ± 25%	Explore
intermediate monocyte	4 studies	44% ± 23%	Explore
luminal hormone-sensing cell of mammary gland	4 studies	52% ± 9%	Explore
luminal cell of prostate epithelium	4 studies	39% ± 9%	Explore
megakaryocyte-erythroid progenitor cell	4 studies	66% ± 28%	Explore
keratinocyte	4 studies	40% ± 10%	Explore
T-helper 17 cell	4 studies	41% ± 17%	Explore
double negative thymocyte	4 studies	56% ± 20%	Explore
CD4-positive, alpha-beta cytotoxic T cell	3 studies	40% ± 17%	Explore
hillock cell	3 studies	32% ± 9%	Explore
squamous epithelial cell	3 studies	43% ± 25%	Explore
pancreatic D cell	3 studies	54% ± 25%	Explore
type B pancreatic cell	3 studies	66% ± 15%	Explore
podocyte	3 studies	47% ± 12%	Explore
differentiation-committed oligodendrocyte precursor	3 studies	48% ± 17%	Explore
neural crest cell	3 studies	58% ± 9%	Explore
GABAergic interneuron	3 studies	44% ± 8%	Explore
extravillous trophoblast	3 studies	47% ± 5%	Explore
placental villous trophoblast	3 studies	58% ± 2%	Explore
megakaryocyte	3 studies	34% ± 19%	Explore
serous secreting cell	3 studies	24% ± 10%	Explore
tissue-resident macrophage	3 studies	36% ± 7%	Explore
GABAergic amacrine cell	3 studies	43% ± 11%	Explore
glycinergic amacrine cell	3 studies	37% ± 5%	Explore
rod bipolar cell	3 studies	46% ± 4%	Explore
acinar cell	3 studies	48% ± 19%	Explore
germinal center B cell	3 studies	40% ± 6%	Explore
cholangiocyte	3 studies	61% ± 7%	Explore
pancreatic ductal cell	3 studies	65% ± 16%	Explore
neural progenitor cell	3 studies	43% ± 2%	Explore
neutrophil	3 studies	20% ± 4%	Explore
chondrocyte	3 studies	55% ± 9%	Explore
group 3 innate lymphoid cell	3 studies	60% ± 10%	Explore
melanocyte	3 studies	49% ± 22%	Explore
T-helper 1 cell	3 studies	50% ± 11%	Explore
central memory CD4-positive, alpha-beta T cell	3 studies	37% ± 10%	Explore
double-positive, alpha-beta thymocyte	3 studies	56% ± 21%	Explore
progenitor cell of mammary luminal epithelium	3 studies	36% ± 6%	Explore
mural cell	3 studies	45% ± 9%	Explore
renal principal cell	3 studies	36% ± 9%	Explore
IgA plasma cell	3 studies	27% ± 5%	Explore
IgG plasma cell	3 studies	25% ± 6%	Explore

II. Expression across tissues

Name	Number of supported studies	Average coverage
brain	22 studies	44% ± 22%	Explore
lung	20 studies	40% ± 12%	Explore
peripheral blood	18 studies	40% ± 14%	Explore
eye	11 studies	39% ± 15%	Explore
intestine	10 studies	35% ± 18%	Explore
kidney	10 studies	34% ± 11%	Explore
liver	7 studies	44% ± 22%	Explore
pancreas	5 studies	48% ± 25%	Explore
bone marrow	5 studies	39% ± 19%	Explore
heart	5 studies	35% ± 5%	Explore
lymph node	5 studies	43% ± 7%	Explore
breast	5 studies	39% ± 6%	Explore
uterus	4 studies	46% ± 17%	Explore
esophagus	4 studies	36% ± 25%	Explore
skin	4 studies	34% ± 8%	Explore
prostate	4 studies	36% ± 9%	Explore
adipose	4 studies	53% ± 22%	Explore
placenta	3 studies	54% ± 5%	Explore
adrenal gland	3 studies	36% ± 13%	Explore
stomach	3 studies	36% ± 20%	Explore
thymus	3 studies	54% ± 26%	Explore

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
bladder	100%	19997.48	21 / 21	100%	54.26	504 / 504
breast	100%	24703.44	459 / 459	100%	65.09	1118 / 1118
ovary	100%	26271.87	180 / 180	100%	46.13	430 / 430
prostate	100%	20602.16	245 / 245	100%	58.65	502 / 502
uterus	100%	26491.66	170 / 170	100%	66.60	459 / 459
esophagus	100%	18148.99	1444 / 1445	100%	59.95	183 / 183
lung	100%	19882.06	577 / 578	100%	56.40	1155 / 1155
thymus	100%	26656.60	653 / 653	100%	64.61	603 / 605
intestine	100%	21584.53	966 / 966	100%	45.88	525 / 527
pancreas	100%	13480.14	328 / 328	99%	51.86	177 / 178
stomach	100%	16628.08	359 / 359	99%	44.92	284 / 286
adrenal gland	100%	15574.27	258 / 258	99%	31.36	227 / 230
brain	97%	11610.08	2575 / 2642	100%	60.67	705 / 705
kidney	100%	12511.60	89 / 89	97%	42.38	877 / 901
skin	100%	20604.72	1809 / 1809	94%	50.61	443 / 472
liver	100%	12490.77	226 / 226	93%	27.89	378 / 406
adipose	100%	22049.44	1204 / 1204	0%	0	0 / 0
blood vessel	100%	20248.25	1335 / 1335	0%	0	0 / 0
lymph node	0%	0	0 / 0	100%	52.08	29 / 29
spleen	100%	22659.49	241 / 241	0%	0	0 / 0
tonsil	0%	0	0 / 0	100%	49.78	45 / 45
ureter	0%	0	0 / 0	100%	25.97	1 / 1
muscle	100%	10555.86	801 / 803	0%	0	0 / 0
heart	95%	8240.12	822 / 861	0%	0	0 / 0
eye	0%	0	0 / 0	64%	24.22	51 / 80
peripheral blood	60%	7380.31	560 / 929	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0

IV. Literature review

[source]

Gene name	SRSF11
Protein name	Serine/arginine-rich splicing factor 11 (Arginine-rich 54 kDa nuclear protein) (p54) (Splicing factor, arginine/serine-rich 11) Serine and arginine rich splicing factor 11 (cDNA FLJ52287, highly similar to Splicing factor arginine/serine-rich 11) Serine and arginine rich splicing factor 11 Serine/arginine-rich-splicing factor 11 Serine and arginine rich splicing factor 11 (cDNA FLJ58939, highly similar to Splicing factor arginine/serine-rich 11)
Synonyms	SFRS11
Description	FUNCTION: May function in pre-mRNA splicing.
Accessions	Q05519 Q5T760 ENST00000475204.5 ENST00000395136.7 A0A8I5KQP9 ENST00000370949.2 [Q05519-1] B4DTC1 B4DWT1 ENST00000481648.5 ENST00000370951.5 [Q05519-2] ENST00000687381.1 S4R3C4 ENST00000370949 ENST00000473950.5 Q5T757 ENST00000370950.7 [Q05519-1]

GO_0008380	Biological process	RNA splicing
GO_0006397	Biological process	mRNA processing
GO_0016607	Cellular component	nuclear speck
GO_0005654	Cellular component	nucleoplasm
GO_0005634	Cellular component	nucleus
GO_0005515	Molecular function	protein binding
GO_0003723	Molecular function	RNA binding

SRSF11 report

I. Expression across cell types

II. Expression across tissues

III. Associated gene sets

IV. Literature review