SCAF11 | OmnibusX

I. Expression across cell types

Name	Number of supported studies	Average coverage
endothelial cell	46 studies	38% ± 14%	Explore
fibroblast	42 studies	33% ± 11%	Explore
B cell	41 studies	40% ± 11%	Explore
macrophage	38 studies	38% ± 14%	Explore
natural killer cell	37 studies	34% ± 10%	Explore
T cell	32 studies	29% ± 9%	Explore
pericyte	32 studies	29% ± 9%	Explore
CD8-positive, alpha-beta T cell	32 studies	30% ± 10%	Explore
smooth muscle cell	31 studies	28% ± 9%	Explore
CD4-positive, alpha-beta T cell	29 studies	31% ± 9%	Explore
conventional dendritic cell	28 studies	36% ± 12%	Explore
mast cell	24 studies	31% ± 12%	Explore
classical monocyte	24 studies	35% ± 13%	Explore
regulatory T cell	23 studies	30% ± 8%	Explore
non-classical monocyte	22 studies	37% ± 12%	Explore
monocyte	21 studies	37% ± 11%	Explore
dendritic cell	20 studies	42% ± 22%	Explore
memory B cell	20 studies	39% ± 8%	Explore
plasmacytoid dendritic cell	20 studies	48% ± 14%	Explore
endothelial cell of lymphatic vessel	19 studies	34% ± 13%	Explore
ciliated cell	19 studies	40% ± 12%	Explore
naive B cell	19 studies	39% ± 8%	Explore
mature NK T cell	18 studies	32% ± 8%	Explore
basal cell	17 studies	35% ± 15%	Explore
epithelial cell	17 studies	37% ± 21%	Explore
naive thymus-derived CD4-positive, alpha-beta T cell	17 studies	32% ± 10%	Explore
gamma-delta T cell	17 studies	37% ± 11%	Explore
astrocyte	16 studies	37% ± 16%	Explore
myeloid cell	16 studies	38% ± 14%	Explore
CD16-positive, CD56-dim natural killer cell, human	15 studies	36% ± 9%	Explore
CD16-negative, CD56-bright natural killer cell, human	15 studies	34% ± 9%	Explore
microglial cell	15 studies	46% ± 16%	Explore
capillary endothelial cell	14 studies	30% ± 8%	Explore
myofibroblast cell	14 studies	31% ± 9%	Explore
mucosal invariant T cell	14 studies	32% ± 6%	Explore
CD8-positive, alpha-beta memory T cell	13 studies	36% ± 10%	Explore
naive thymus-derived CD8-positive, alpha-beta T cell	13 studies	33% ± 10%	Explore
oligodendrocyte precursor cell	13 studies	34% ± 17%	Explore
vein endothelial cell	13 studies	33% ± 10%	Explore
endothelial cell of vascular tree	13 studies	30% ± 12%	Explore
CD4-positive, alpha-beta memory T cell	12 studies	30% ± 9%	Explore
effector memory CD8-positive, alpha-beta T cell	12 studies	39% ± 13%	Explore
connective tissue cell	12 studies	31% ± 8%	Explore
endothelial cell of artery	12 studies	29% ± 7%	Explore
oligodendrocyte	11 studies	37% ± 14%	Explore
type I pneumocyte	10 studies	35% ± 9%	Explore
club cell	10 studies	31% ± 11%	Explore
type II pneumocyte	9 studies	30% ± 9%	Explore
plasma cell	9 studies	28% ± 11%	Explore
secretory cell	9 studies	32% ± 12%	Explore
leukocyte	9 studies	43% ± 11%	Explore
glutamatergic neuron	9 studies	39% ± 25%	Explore
abnormal cell	9 studies	35% ± 17%	Explore
adipocyte	9 studies	49% ± 12%	Explore
alveolar macrophage	8 studies	39% ± 12%	Explore
respiratory goblet cell	8 studies	33% ± 11%	Explore
GABAergic neuron	8 studies	39% ± 21%	Explore
goblet cell	8 studies	36% ± 19%	Explore
amacrine cell	8 studies	31% ± 10%	Explore
retinal rod cell	8 studies	38% ± 9%	Explore
neutrophil	7 studies	25% ± 5%	Explore
effector CD8-positive, alpha-beta T cell	7 studies	29% ± 10%	Explore
mononuclear phagocyte	7 studies	37% ± 11%	Explore
progenitor cell	7 studies	29% ± 8%	Explore
mesothelial cell	7 studies	29% ± 12%	Explore
innate lymphoid cell	7 studies	33% ± 9%	Explore
retinal cone cell	7 studies	40% ± 16%	Explore
T follicular helper cell	7 studies	31% ± 6%	Explore
hematopoietic precursor cell	6 studies	42% ± 19%	Explore
ionocyte	6 studies	30% ± 12%	Explore
effector CD4-positive, alpha-beta T cell	6 studies	29% ± 9%	Explore
kidney loop of Henle epithelial cell	6 studies	21% ± 4%	Explore
interneuron	6 studies	38% ± 22%	Explore
neuron	6 studies	37% ± 17%	Explore
lymphocyte	6 studies	41% ± 15%	Explore
precursor B cell	6 studies	42% ± 11%	Explore
retina horizontal cell	6 studies	31% ± 10%	Explore
Mueller cell	6 studies	32% ± 10%	Explore
effector memory CD4-positive, alpha-beta T cell	6 studies	38% ± 16%	Explore
plasmablast	5 studies	38% ± 22%	Explore
retinal bipolar neuron	5 studies	34% ± 11%	Explore
glial cell	5 studies	30% ± 10%	Explore
hematopoietic stem cell	5 studies	36% ± 12%	Explore
pro-B cell	5 studies	40% ± 8%	Explore
brush cell	5 studies	32% ± 8%	Explore
immature B cell	5 studies	42% ± 6%	Explore
cardiac muscle cell	5 studies	47% ± 7%	Explore
hepatocyte	5 studies	50% ± 23%	Explore
effector memory CD8-positive, alpha-beta T cell, terminally differentiated	5 studies	29% ± 5%	Explore
deuterosomal cell	4 studies	24% ± 8%	Explore
duct epithelial cell	4 studies	28% ± 13%	Explore
pancreatic A cell	4 studies	33% ± 14%	Explore
exhausted T cell	4 studies	32% ± 14%	Explore
kidney distal convoluted tubule epithelial cell	4 studies	27% ± 2%	Explore
epithelial cell of proximal tubule	4 studies	23% ± 6%	Explore
transit amplifying cell	4 studies	36% ± 27%	Explore
granule cell	4 studies	21% ± 5%	Explore
retinal ganglion cell	4 studies	39% ± 13%	Explore
retinal pigment epithelial cell	4 studies	37% ± 20%	Explore
CD4-positive helper T cell	4 studies	35% ± 15%	Explore
luminal hormone-sensing cell of mammary gland	4 studies	30% ± 7%	Explore
muscle cell	4 studies	40% ± 17%	Explore
enteroendocrine cell	4 studies	28% ± 8%	Explore
double negative thymocyte	4 studies	43% ± 12%	Explore
precursor cell	3 studies	30% ± 5%	Explore
squamous epithelial cell	3 studies	43% ± 26%	Explore
platelet	3 studies	21% ± 4%	Explore
pancreatic D cell	3 studies	35% ± 21%	Explore
type B pancreatic cell	3 studies	40% ± 20%	Explore
glomerular endothelial cell	3 studies	32% ± 3%	Explore
podocyte	3 studies	33% ± 8%	Explore
renal alpha-intercalated cell	3 studies	27% ± 1%	Explore
enterocyte	3 studies	18% ± 2%	Explore
intestinal crypt stem cell	3 studies	23% ± 4%	Explore
neural crest cell	3 studies	29% ± 1%	Explore
GABAergic interneuron	3 studies	19% ± 2%	Explore
serous secreting cell	3 studies	21% ± 5%	Explore
tissue-resident macrophage	3 studies	37% ± 9%	Explore
OFF-bipolar cell	3 studies	31% ± 8%	Explore
ON-bipolar cell	3 studies	35% ± 10%	Explore
glycinergic amacrine cell	3 studies	27% ± 5%	Explore
rod bipolar cell	3 studies	44% ± 5%	Explore
erythroblast	3 studies	42% ± 15%	Explore
inflammatory macrophage	3 studies	32% ± 11%	Explore
germinal center B cell	3 studies	36% ± 3%	Explore
intermediate monocyte	3 studies	48% ± 27%	Explore
pancreatic ductal cell	3 studies	52% ± 20%	Explore
ependymal cell	3 studies	39% ± 14%	Explore
granulocyte	3 studies	37% ± 14%	Explore
adventitial cell	3 studies	33% ± 5%	Explore
chondrocyte	3 studies	32% ± 3%	Explore
group 3 innate lymphoid cell	3 studies	43% ± 11%	Explore
Schwann cell	3 studies	33% ± 15%	Explore
T-helper 17 cell	3 studies	35% ± 4%	Explore
keratinocyte	3 studies	22% ± 3%	Explore
T-helper 1 cell	3 studies	30% ± 11%	Explore
central memory CD4-positive, alpha-beta T cell	3 studies	35% ± 3%	Explore
central memory CD8-positive, alpha-beta T cell	3 studies	35% ± 5%	Explore
myoepithelial cell	3 studies	34% ± 5%	Explore
mural cell	3 studies	42% ± 14%	Explore
mucus secreting cell	3 studies	31% ± 9%	Explore
erythrocyte	3 studies	34% ± 17%	Explore

II. Expression across tissues

Name	Number of supported studies	Average coverage
lung	19 studies	33% ± 10%	Explore
brain	18 studies	33% ± 19%	Explore
peripheral blood	17 studies	38% ± 14%	Explore
intestine	10 studies	25% ± 10%	Explore
eye	10 studies	37% ± 13%	Explore
kidney	9 studies	26% ± 6%	Explore
liver	6 studies	40% ± 16%	Explore
heart	5 studies	36% ± 7%	Explore
lymph node	5 studies	31% ± 6%	Explore
breast	5 studies	26% ± 9%	Explore
bone marrow	4 studies	36% ± 12%	Explore
uterus	4 studies	40% ± 14%	Explore
adipose	4 studies	42% ± 11%	Explore
pancreas	3 studies	41% ± 16%	Explore

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
esophagus	100%	5952.79	1445 / 1445	100%	36.55	183 / 183
lung	100%	7205.63	578 / 578	100%	29.13	1154 / 1155
breast	100%	7900.25	459 / 459	100%	35.35	1115 / 1118
ovary	100%	8329.04	180 / 180	100%	20.86	428 / 430
prostate	100%	5939.45	245 / 245	99%	26.78	499 / 502
thymus	100%	7434.77	653 / 653	99%	25.92	600 / 605
uterus	100%	7854.66	170 / 170	99%	25.41	455 / 459
intestine	100%	6463.24	966 / 966	99%	25.26	522 / 527
bladder	100%	6266.00	21 / 21	99%	24.36	499 / 504
brain	99%	2975.15	2612 / 2642	100%	19.97	704 / 705
stomach	100%	4496.76	359 / 359	99%	27.28	282 / 286
pancreas	100%	3732.25	327 / 328	99%	24.93	176 / 178
kidney	100%	4289.69	89 / 89	98%	28.26	881 / 901
adrenal gland	100%	5134.10	258 / 258	92%	13.30	212 / 230
liver	100%	3559.71	226 / 226	91%	13.89	368 / 406
skin	100%	7131.84	1809 / 1809	89%	19.61	422 / 472
adipose	100%	8045.30	1204 / 1204	0%	0	0 / 0
blood vessel	100%	7004.20	1335 / 1335	0%	0	0 / 0
lymph node	0%	0	0 / 0	100%	27.19	29 / 29
muscle	100%	5394.32	803 / 803	0%	0	0 / 0
spleen	100%	7226.55	241 / 241	0%	0	0 / 0
tonsil	0%	0	0 / 0	100%	28.83	45 / 45
ureter	0%	0	0 / 0	100%	7.20	1 / 1
heart	98%	4507.74	847 / 861	0%	0	0 / 0
peripheral blood	95%	5733.85	878 / 929	0%	0	0 / 0
eye	0%	0	0 / 0	50%	6.26	40 / 80
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0

IV. Literature review

[source]

Gene name	SCAF11
Protein name	Protein SCAF11 (CTD-associated SR protein 11) (Renal carcinoma antigen NY-REN-40) (SC35-interacting protein 1) (SR-related and CTD-associated factor 11) (SRSF2-interacting protein) (Serine/arginine-rich splicing factor 2-interacting protein) (Splicing factor, arginine/serine-rich 2-interacting protein) (Splicing regulatory protein 129) (SRrp129) SR-related CTD associated factor 11
Synonyms	CASP11 SFRS2IP SIP1 SRSF2IP
Description	FUNCTION: Plays a role in pre-mRNA alternative splicing by regulating spliceosome assembly. .
Accessions	A0A0A0MTP7 A8MTP4 A0A087WTB7 F8W6K1 ENST00000465950.5 [Q99590-2] A0A087WUE7 ENST00000549162.5 ENST00000395453.2 A8MUK0 ENST00000266589.10 ENST00000550893.2 ENST00000547018.5 F8VXG7 ENST00000369367.8 [Q99590-1] ENST00000395454.6 ENST00000551391.1 Q99590

GO_0000245	Biological process	spliceosomal complex assembly
GO_0008380	Biological process	RNA splicing
GO_0000375	Biological process	RNA splicing, via transesterification reactions
GO_0006397	Biological process	mRNA processing
GO_0005730	Cellular component	nucleolus
GO_0005654	Cellular component	nucleoplasm
GO_0016604	Cellular component	nuclear body
GO_0005515	Molecular function	protein binding
GO_0046872	Molecular function	metal ion binding
GO_0003723	Molecular function	RNA binding

SCAF11 report

I. Expression across cell types

II. Expression across tissues

III. Associated gene sets

IV. Literature review