RBM39 | OmnibusX

I. Expression across cell types

Name	Number of supported studies	Average coverage
B cell	50 studies	57% ± 19%	Explore
endothelial cell	50 studies	55% ± 17%	Explore
natural killer cell	46 studies	62% ± 18%	Explore
fibroblast	45 studies	56% ± 15%	Explore
macrophage	42 studies	46% ± 17%	Explore
T cell	40 studies	53% ± 18%	Explore
pericyte	39 studies	55% ± 16%	Explore
CD8-positive, alpha-beta T cell	38 studies	55% ± 14%	Explore
CD4-positive, alpha-beta T cell	34 studies	56% ± 15%	Explore
smooth muscle cell	33 studies	51% ± 15%	Explore
dendritic cell	29 studies	56% ± 21%	Explore
mast cell	29 studies	54% ± 21%	Explore
conventional dendritic cell	28 studies	63% ± 16%	Explore
regulatory T cell	28 studies	58% ± 14%	Explore
classical monocyte	27 studies	56% ± 16%	Explore
endothelial cell of lymphatic vessel	26 studies	52% ± 16%	Explore
non-classical monocyte	25 studies	56% ± 17%	Explore
basal cell	24 studies	54% ± 16%	Explore
plasma cell	23 studies	48% ± 16%	Explore
plasmacytoid dendritic cell	23 studies	64% ± 17%	Explore
epithelial cell	23 studies	57% ± 22%	Explore
monocyte	22 studies	51% ± 14%	Explore
mature NK T cell	22 studies	56% ± 14%	Explore
astrocyte	21 studies	45% ± 19%	Explore
gamma-delta T cell	20 studies	61% ± 19%	Explore
memory B cell	20 studies	67% ± 12%	Explore
naive B cell	20 studies	60% ± 14%	Explore
naive thymus-derived CD4-positive, alpha-beta T cell	19 studies	52% ± 16%	Explore
ciliated cell	19 studies	54% ± 16%	Explore
connective tissue cell	19 studies	58% ± 19%	Explore
CD16-negative, CD56-bright natural killer cell, human	17 studies	67% ± 17%	Explore
mucosal invariant T cell	17 studies	56% ± 16%	Explore
microglial cell	17 studies	46% ± 17%	Explore
myeloid cell	17 studies	53% ± 17%	Explore
CD16-positive, CD56-dim natural killer cell, human	16 studies	70% ± 15%	Explore
oligodendrocyte	16 studies	38% ± 18%	Explore
naive thymus-derived CD8-positive, alpha-beta T cell	15 studies	55% ± 12%	Explore
oligodendrocyte precursor cell	15 studies	45% ± 20%	Explore
capillary endothelial cell	15 studies	49% ± 13%	Explore
myofibroblast cell	15 studies	59% ± 16%	Explore
innate lymphoid cell	14 studies	62% ± 18%	Explore
endothelial cell of artery	14 studies	52% ± 13%	Explore
mesothelial cell	14 studies	58% ± 19%	Explore
vein endothelial cell	14 studies	56% ± 14%	Explore
endothelial cell of vascular tree	14 studies	56% ± 12%	Explore
effector memory CD8-positive, alpha-beta T cell	13 studies	61% ± 17%	Explore
CD4-positive, alpha-beta memory T cell	13 studies	59% ± 16%	Explore
CD8-positive, alpha-beta memory T cell	13 studies	64% ± 17%	Explore
type I pneumocyte	12 studies	49% ± 18%	Explore
type II pneumocyte	12 studies	47% ± 18%	Explore
plasmablast	12 studies	62% ± 25%	Explore
secretory cell	12 studies	59% ± 13%	Explore
leukocyte	12 studies	59% ± 15%	Explore
club cell	11 studies	46% ± 14%	Explore
glutamatergic neuron	11 studies	49% ± 25%	Explore
progenitor cell	11 studies	55% ± 21%	Explore
neuron	11 studies	51% ± 25%	Explore
neutrophil	10 studies	28% ± 8%	Explore
GABAergic neuron	10 studies	48% ± 23%	Explore
abnormal cell	10 studies	59% ± 17%	Explore
goblet cell	10 studies	45% ± 21%	Explore
T follicular helper cell	9 studies	60% ± 18%	Explore
retinal cone cell	9 studies	56% ± 19%	Explore
retinal rod cell	9 studies	47% ± 13%	Explore
adipocyte	9 studies	60% ± 20%	Explore
alveolar macrophage	8 studies	42% ± 12%	Explore
respiratory goblet cell	8 studies	48% ± 17%	Explore
effector CD8-positive, alpha-beta T cell	8 studies	56% ± 14%	Explore
erythrocyte	8 studies	43% ± 17%	Explore
kidney loop of Henle epithelial cell	8 studies	35% ± 11%	Explore
IgG plasma cell	8 studies	36% ± 12%	Explore
amacrine cell	8 studies	50% ± 16%	Explore
platelet	7 studies	35% ± 15%	Explore
mononuclear phagocyte	7 studies	55% ± 19%	Explore
renal alpha-intercalated cell	7 studies	52% ± 16%	Explore
kidney distal convoluted tubule epithelial cell	7 studies	51% ± 20%	Explore
epithelial cell of proximal tubule	7 studies	32% ± 17%	Explore
retinal ganglion cell	7 studies	50% ± 23%	Explore
hematopoietic stem cell	7 studies	70% ± 11%	Explore
precursor B cell	7 studies	71% ± 17%	Explore
immature B cell	7 studies	71% ± 11%	Explore
effector memory CD8-positive, alpha-beta T cell, terminally differentiated	6 studies	50% ± 9%	Explore
ionocyte	6 studies	49% ± 8%	Explore
effector CD4-positive, alpha-beta T cell	6 studies	59% ± 14%	Explore
enterocyte	6 studies	36% ± 12%	Explore
IgA plasma cell	6 studies	43% ± 10%	Explore
interneuron	6 studies	55% ± 22%	Explore
lymphocyte	6 studies	60% ± 19%	Explore
retina horizontal cell	6 studies	55% ± 15%	Explore
mucus secreting cell	6 studies	33% ± 10%	Explore
Mueller cell	6 studies	54% ± 9%	Explore
effector memory CD4-positive, alpha-beta T cell	6 studies	67% ± 16%	Explore
hepatocyte	6 studies	54% ± 27%	Explore
CD4-positive helper T cell	5 studies	54% ± 21%	Explore
central memory CD8-positive, alpha-beta T cell	5 studies	54% ± 10%	Explore
hematopoietic precursor cell	5 studies	76% ± 11%	Explore
exhausted T cell	5 studies	58% ± 9%	Explore
enteroendocrine cell	5 studies	56% ± 19%	Explore
transit amplifying cell	5 studies	48% ± 25%	Explore
retinal bipolar neuron	5 studies	52% ± 16%	Explore
glial cell	5 studies	45% ± 20%	Explore
OFF-bipolar cell	5 studies	42% ± 11%	Explore
ON-bipolar cell	5 studies	43% ± 12%	Explore
renal principal cell	5 studies	44% ± 16%	Explore
erythroblast	5 studies	50% ± 30%	Explore
pro-B cell	5 studies	68% ± 17%	Explore
brush cell	5 studies	42% ± 13%	Explore
T-helper 17 cell	5 studies	60% ± 11%	Explore
adventitial cell	5 studies	46% ± 10%	Explore
cardiac muscle cell	5 studies	50% ± 10%	Explore
muscle cell	5 studies	45% ± 25%	Explore
double negative thymocyte	5 studies	76% ± 12%	Explore
granulocyte	5 studies	62% ± 8%	Explore
CD4-positive, alpha-beta cytotoxic T cell	4 studies	40% ± 14%	Explore
deuterosomal cell	4 studies	43% ± 9%	Explore
duct epithelial cell	4 studies	40% ± 15%	Explore
precursor cell	4 studies	53% ± 11%	Explore
squamous epithelial cell	4 studies	49% ± 19%	Explore
glomerular endothelial cell	4 studies	53% ± 12%	Explore
parietal epithelial cell	4 studies	46% ± 12%	Explore
intestinal crypt stem cell	4 studies	38% ± 10%	Explore
granule cell	4 studies	35% ± 10%	Explore
glycinergic amacrine cell	4 studies	39% ± 12%	Explore
Schwann cell	4 studies	50% ± 19%	Explore
retinal pigment epithelial cell	4 studies	53% ± 25%	Explore
inflammatory macrophage	4 studies	36% ± 11%	Explore
chondrocyte	4 studies	53% ± 23%	Explore
intermediate monocyte	4 studies	65% ± 23%	Explore
luminal hormone-sensing cell of mammary gland	4 studies	73% ± 6%	Explore
myoepithelial cell	4 studies	56% ± 6%	Explore
luminal cell of prostate epithelium	4 studies	53% ± 12%	Explore
group 3 innate lymphoid cell	4 studies	78% ± 10%	Explore
keratinocyte	4 studies	51% ± 13%	Explore
T-helper 1 cell	4 studies	60% ± 11%	Explore
hillock cell	3 studies	30% ± 6%	Explore
pancreatic A cell	3 studies	60% ± 6%	Explore
type B pancreatic cell	3 studies	53% ± 18%	Explore
monocyte-derived dendritic cell	3 studies	60% ± 24%	Explore
podocyte	3 studies	67% ± 20%	Explore
kidney connecting tubule epithelial cell	3 studies	43% ± 18%	Explore
renal beta-intercalated cell	3 studies	71% ± 15%	Explore
neural crest cell	3 studies	65% ± 10%	Explore
GABAergic interneuron	3 studies	34% ± 4%	Explore
extravillous trophoblast	3 studies	68% ± 7%	Explore
placental villous trophoblast	3 studies	80% ± 3%	Explore
neuroendocrine cell	3 studies	51% ± 17%	Explore
serous secreting cell	3 studies	29% ± 19%	Explore
tissue-resident macrophage	3 studies	61% ± 15%	Explore
intraepithelial lymphocyte	3 studies	52% ± 23%	Explore
GABAergic amacrine cell	3 studies	45% ± 10%	Explore
rod bipolar cell	3 studies	61% ± 5%	Explore
endothelial cell of sinusoid	3 studies	28% ± 9%	Explore
germinal center B cell	3 studies	58% ± 7%	Explore
IgM plasma cell	3 studies	41% ± 16%	Explore
ependymal cell	3 studies	49% ± 16%	Explore
megakaryocyte-erythroid progenitor cell	3 studies	89% ± 5%	Explore
melanocyte	3 studies	61% ± 19%	Explore
central memory CD4-positive, alpha-beta T cell	3 studies	60% ± 4%	Explore
double-positive, alpha-beta thymocyte	3 studies	76% ± 12%	Explore
progenitor cell of mammary luminal epithelium	3 studies	58% ± 6%	Explore
mural cell	3 studies	54% ± 17%	Explore

II. Expression across tissues

Name	Number of supported studies	Average coverage
lung	21 studies	51% ± 16%	Explore
brain	21 studies	43% ± 21%	Explore
peripheral blood	19 studies	59% ± 16%	Explore
intestine	11 studies	49% ± 21%	Explore
kidney	11 studies	43% ± 15%	Explore
eye	11 studies	53% ± 15%	Explore
lymph node	6 studies	54% ± 22%	Explore
liver	6 studies	60% ± 19%	Explore
placenta	5 studies	48% ± 25%	Explore
heart	5 studies	45% ± 9%	Explore
uterus	5 studies	62% ± 21%	Explore
prostate	5 studies	47% ± 20%	Explore
breast	5 studies	55% ± 16%	Explore
bone marrow	4 studies	55% ± 23%	Explore
esophagus	4 studies	42% ± 28%	Explore
skin	4 studies	40% ± 13%	Explore
adipose	4 studies	62% ± 24%	Explore
pancreas	3 studies	53% ± 13%	Explore
adrenal gland	3 studies	45% ± 18%	Explore
stomach	3 studies	39% ± 29%	Explore
thymus	3 studies	62% ± 27%	Explore

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
bladder	100%	17614.76	21 / 21	100%	61.47	504 / 504
breast	100%	20344.48	459 / 459	100%	75.79	1118 / 1118
esophagus	100%	16032.46	1445 / 1445	100%	58.43	183 / 183
intestine	100%	19429.73	966 / 966	100%	60.54	527 / 527
pancreas	100%	11111.93	328 / 328	100%	55.87	178 / 178
stomach	100%	15321.03	359 / 359	100%	57.22	286 / 286
uterus	100%	24661.05	170 / 170	100%	69.33	459 / 459
lung	100%	18413.98	578 / 578	100%	54.14	1154 / 1155
thymus	100%	25622.40	653 / 653	100%	67.96	604 / 605
prostate	100%	21456.16	245 / 245	100%	62.58	501 / 502
ovary	100%	26332.94	180 / 180	100%	43.02	429 / 430
brain	100%	10638.76	2633 / 2642	100%	55.52	705 / 705
adrenal gland	100%	16922.18	258 / 258	100%	47.26	229 / 230
liver	100%	11578.49	226 / 226	99%	33.67	403 / 406
kidney	100%	15676.87	89 / 89	99%	48.96	894 / 901
skin	100%	16969.04	1809 / 1809	98%	50.90	461 / 472
adipose	100%	18181.03	1204 / 1204	0%	0	0 / 0
blood vessel	100%	14840.97	1335 / 1335	0%	0	0 / 0
lymph node	0%	0	0 / 0	100%	55.91	29 / 29
spleen	100%	26468.66	241 / 241	0%	0	0 / 0
tonsil	0%	0	0 / 0	100%	57.31	45 / 45
ureter	0%	0	0 / 0	100%	19.36	1 / 1
muscle	100%	10548.59	802 / 803	0%	0	0 / 0
heart	99%	9169.80	854 / 861	0%	0	0 / 0
peripheral blood	97%	12024.23	900 / 929	0%	0	0 / 0
eye	0%	0	0 / 0	91%	33.55	73 / 80
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0

IV. Literature review

[source]

Gene name	RBM39
Protein name	RNA binding motif protein 39 RNA-binding protein 39 (CAPER alpha) (CAPERalpha) (Hepatocellular carcinoma protein 1) (RNA-binding motif protein 39) (RNA-binding region-containing protein 2) (Splicing factor HCC1) RNA binding motif protein 39 (RNA-binding region (RNP1, RRM) containing 2, isoform CRA_f)
Synonyms	HCC1 hCG_38221 RNPC2
Description	FUNCTION: RNA-binding protein that acts as a pre-mRNA splicing factor . Acts by promoting exon inclusion via regulation of exon cassette splicing . Also acts as a transcriptional coactivator for steroid nuclear receptors ESR1/ER-alpha and ESR2/ER-beta, and JUN/AP-1, independently of the pre-mRNA splicing factor activity (By similarity). .
Accessions	ENST00000448303.5 Q14498 ENST00000412738.5 G3XAC6 F2Z3E6 A0A087X122 H0Y4X3 ENST00000615771.5 A8MYG5 ENST00000338163.10 ENST00000361162.10 [Q14498-2] ENST00000403542.6 ENST00000528062.7 [Q14498-3] ENST00000476806.5 ENST00000656873.1 H7BZG3 F8WF73 ENST00000434927.5 F2Z2Z5 ENST00000429968.5 ENST00000425184.5 ENST00000449489.5 ENST00000433027.5 ENST00000416529.5 ENST00000490484.7 ENST00000374038.7 ENST00000397370.3 ENST00000444878.5 ENST00000416108.5 F8WF24 H0Y6I9 ENST00000453310.5 ENST00000455343.5 ENST00000426951.5 ENST00000253363.11 [Q14498-1] A0A0U1RQH7 Q5QP23 Q5QP22 A0A0U1RQW2

GO_0008380	Biological process	RNA splicing
GO_0048024	Biological process	regulation of mRNA splicing, via spliceosome
GO_0006397	Biological process	mRNA processing
GO_0006396	Biological process	RNA processing
GO_0016607	Cellular component	nuclear speck
GO_0032991	Cellular component	protein-containing complex
GO_0005654	Cellular component	nucleoplasm
GO_0015630	Cellular component	microtubule cytoskeleton
GO_0034451	Cellular component	centriolar satellite
GO_1990446	Molecular function	U1 snRNP binding
GO_0050733	Molecular function	RS domain binding
GO_0005515	Molecular function	protein binding
GO_0003723	Molecular function	RNA binding

RBM39 report

I. Expression across cell types

II. Expression across tissues

III. Associated gene sets

IV. Literature review