Name | Number of supported studies | Average coverage | |
---|---|---|---|
peripheral blood | 18 studies | 51% ± 15% | |
lung | 17 studies | 41% ± 17% | |
intestine | 11 studies | 44% ± 23% | |
brain | 8 studies | 32% ± 8% | |
kidney | 7 studies | 43% ± 16% | |
eye | 5 studies | 29% ± 13% | |
bone marrow | 5 studies | 37% ± 18% | |
lymph node | 5 studies | 53% ± 10% | |
liver | 5 studies | 42% ± 19% | |
pancreas | 4 studies | 62% ± 10% | |
uterus | 4 studies | 50% ± 12% | |
breast | 4 studies | 51% ± 16% | |
placenta | 3 studies | 53% ± 21% | |
prostate | 3 studies | 44% ± 15% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 8427.02 | 1444 / 1445 | 99% | 75.60 | 182 / 183 |
stomach | 100% | 8457.53 | 359 / 359 | 99% | 100.96 | 283 / 286 |
intestine | 100% | 10220.59 | 965 / 966 | 99% | 106.67 | 521 / 527 |
lung | 100% | 6867.67 | 576 / 578 | 99% | 95.33 | 1142 / 1155 |
prostate | 100% | 8701.15 | 245 / 245 | 98% | 145.54 | 494 / 502 |
ovary | 100% | 21023.18 | 180 / 180 | 98% | 94.52 | 423 / 430 |
skin | 100% | 12592.01 | 1809 / 1809 | 98% | 159.56 | 462 / 472 |
breast | 100% | 10664.89 | 459 / 459 | 98% | 105.38 | 1091 / 1118 |
pancreas | 100% | 10090.64 | 328 / 328 | 97% | 78.11 | 173 / 178 |
thymus | 100% | 10475.91 | 653 / 653 | 97% | 138.44 | 584 / 605 |
bladder | 100% | 9993.33 | 21 / 21 | 95% | 84.72 | 481 / 504 |
brain | 95% | 5012.97 | 2515 / 2642 | 99% | 117.16 | 697 / 705 |
uterus | 100% | 12677.19 | 170 / 170 | 93% | 78.09 | 425 / 459 |
kidney | 100% | 7775.64 | 89 / 89 | 92% | 87.18 | 826 / 901 |
adrenal gland | 100% | 7580.38 | 258 / 258 | 80% | 51.08 | 183 / 230 |
liver | 73% | 2078.83 | 166 / 226 | 82% | 49.65 | 331 / 406 |
adipose | 100% | 9942.19 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 10214.91 | 1335 / 1335 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 100% | 222.83 | 80 / 80 |
muscle | 100% | 10755.14 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 5755.81 | 241 / 241 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 100% | 20.70 | 1 / 1 |
peripheral blood | 97% | 8397.15 | 899 / 929 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 97% | 112.93 | 28 / 29 |
tonsil | 0% | 0 | 0 / 0 | 96% | 85.55 | 43 / 45 |
heart | 91% | 4889.35 | 781 / 861 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0001732 | Biological process | formation of cytoplasmic translation initiation complex |
GO_0075525 | Biological process | viral translational termination-reinitiation |
GO_0006413 | Biological process | translational initiation |
GO_0005852 | Cellular component | eukaryotic translation initiation factor 3 complex |
GO_0033290 | Cellular component | eukaryotic 48S preinitiation complex |
GO_0005654 | Cellular component | nucleoplasm |
GO_0005829 | Cellular component | cytosol |
GO_0045202 | Cellular component | synapse |
GO_0016282 | Cellular component | eukaryotic 43S preinitiation complex |
GO_0016020 | Cellular component | membrane |
GO_0001650 | Cellular component | fibrillar center |
GO_0003723 | Molecular function | RNA binding |
GO_0003743 | Molecular function | translation initiation factor activity |
GO_0005515 | Molecular function | protein binding |
Gene name | EIF3L |
Protein name | eIF3L protein Eukaryotic translation initiation factor 3 subunit L (eIF3l) (Eukaryotic translation initiation factor 3 subunit 6-interacting protein) (Eukaryotic translation initiation factor 3 subunit E-interacting protein) Eukaryotic translation initiation factor 3 subunit L |
Synonyms | MSTP005 HSPC025 HSPC021 EIF3S6IP hCG_41840 EIF3EIP |
Description | FUNCTION: Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is required for several steps in the initiation of protein synthesis . The eIF-3 complex associates with the 40S ribosome and facilitates the recruitment of eIF-1, eIF-1A, eIF-2:GTP:methionyl-tRNAi and eIF-5 to form the 43S pre-initiation complex (43S PIC). The eIF-3 complex stimulates mRNA recruitment to the 43S PIC and scanning of the mRNA for AUG recognition. The eIF-3 complex is also required for disassembly and recycling of post-termination ribosomal complexes and subsequently prevents premature joining of the 40S and 60S ribosomal subunits prior to initiation . The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation, including cell cycling, differentiation and apoptosis, and uses different modes of RNA stem-loop binding to exert either translational activation or repression . .; FUNCTION: (Microbial infection) In case of FCV infection, plays a role in the ribosomal termination-reinitiation event leading to the translation of VP2 . . FUNCTION: Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is required for several steps in the initiation of protein synthesis. The eIF-3 complex associates with the 40S ribosome and facilitates the recruitment of eIF-1, eIF-1A, eIF-2:GTP:methionyl-tRNAi and eIF-5 to form the 43S pre-initiation complex (43S PIC). The eIF-3 complex stimulates mRNA recruitment to the 43S PIC and scanning of the mRNA for AUG recognition. The eIF-3 complex is also required for disassembly and recycling of post-termination ribosomal complexes and subsequently prevents premature joining of the 40S and 60S ribosomal subunits prior to initiation. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation, including cell cycling, differentiation and apoptosis, and uses different modes of RNA stem-loop binding to exert either translational activation or repression. . FUNCTION: Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is required for several steps in the initiation of protein synthesis. The eIF-3 complex associates with the 40S ribosome and facilitates the recruitment of eIF-1, eIF-1A, eIF-2:GTP:methionyl-tRNAi and eIF-5 to form the 43S pre-initiation complex (43S PIC). The eIF-3 complex stimulates mRNA recruitment to the 43S PIC and scanning of the mRNA for AUG recognition. The eIF-3 complex is also required for disassembly and recycling of post-termination ribosomal complexes and subsequently prevents premature joining of the 40S and 60S ribosomal subunits prior to initiation. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation, including cell cycling, differentiation and apoptosis, and uses different modes of RNA stem-loop binding to exert either translational activation or repression. . FUNCTION: Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is required for several steps in the initiation of protein synthesis. The eIF-3 complex associates with the 40S ribosome and facilitates the recruitment of eIF-1, eIF-1A, eIF-2:GTP:methionyl-tRNAi and eIF-5 to form the 43S pre-initiation complex (43S PIC). The eIF-3 complex stimulates mRNA recruitment to the 43S PIC and scanning of the mRNA for AUG recognition. The eIF-3 complex is also required for disassembly and recycling of post-termination ribosomal complexes and subsequently prevents premature joining of the 40S and 60S ribosomal subunits prior to initiation. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation, including cell cycling, differentiation and apoptosis, and uses different modes of RNA stem-loop binding to exert either translational activation or repression. . FUNCTION: Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is required for several steps in the initiation of protein synthesis. The eIF-3 complex associates with the 40S ribosome and facilitates the recruitment of eIF-1, eIF-1A, eIF-2:GTP:methionyl-tRNAi and eIF-5 to form the 43S pre-initiation complex (43S PIC). The eIF-3 complex stimulates mRNA recruitment to the 43S PIC and scanning of the mRNA for AUG recognition. The eIF-3 complex is also required for disassembly and recycling of post-termination ribosomal complexes and subsequently prevents premature joining of the 40S and 60S ribosomal subunits prior to initiation. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation, including cell cycling, differentiation and apoptosis, and uses different modes of RNA stem-loop binding to exert either translational activation or repression. . |
Accessions | B0QY90 ENST00000450376.1 H7C133 B0QY89 ENST00000624234.3 [Q9Y262-1] ENST00000652021.1 [Q9Y262-1] ENST00000436452.6 Q9Y262 ENST00000381683.10 [Q9Y262-2] H7C3A0 B4DQF6 ENST00000412331.6 ENST00000451427.1 ENST00000406934.5 H0Y7E6 C9K0Q7 ENST00000414316.5 C9JHP4 Q7Z5X3 ENST00000439997.5 B3KPB9 |