Name | Number of supported studies | Average coverage | |
---|---|---|---|
peripheral blood | 19 studies | 62% ± 13% | |
lung | 17 studies | 48% ± 16% | |
intestine | 12 studies | 46% ± 23% | |
brain | 9 studies | 27% ± 6% | |
kidney | 8 studies | 46% ± 19% | |
eye | 7 studies | 32% ± 15% | |
lymph node | 6 studies | 60% ± 13% | |
bone marrow | 5 studies | 41% ± 18% | |
placenta | 5 studies | 42% ± 28% | |
liver | 5 studies | 47% ± 20% | |
pancreas | 4 studies | 51% ± 5% | |
uterus | 4 studies | 64% ± 8% | |
breast | 4 studies | 55% ± 9% | |
prostate | 3 studies | 40% ± 9% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 11156.63 | 1445 / 1445 | 100% | 29.94 | 183 / 183 |
kidney | 100% | 8107.47 | 89 / 89 | 100% | 29.36 | 901 / 901 |
liver | 100% | 4365.43 | 226 / 226 | 100% | 22.40 | 406 / 406 |
ovary | 100% | 17887.55 | 180 / 180 | 100% | 41.25 | 430 / 430 |
pancreas | 100% | 10566.77 | 328 / 328 | 100% | 31.47 | 178 / 178 |
prostate | 100% | 10060.11 | 245 / 245 | 100% | 40.55 | 502 / 502 |
stomach | 100% | 10351.53 | 359 / 359 | 100% | 35.42 | 286 / 286 |
thymus | 100% | 9278.07 | 653 / 653 | 100% | 43.52 | 604 / 605 |
intestine | 100% | 12684.04 | 966 / 966 | 100% | 38.52 | 526 / 527 |
bladder | 100% | 12476.52 | 21 / 21 | 100% | 34.95 | 503 / 504 |
skin | 100% | 17072.12 | 1809 / 1809 | 100% | 37.65 | 471 / 472 |
uterus | 100% | 13638.68 | 170 / 170 | 100% | 35.83 | 458 / 459 |
breast | 100% | 12090.85 | 459 / 459 | 100% | 34.96 | 1114 / 1118 |
lung | 100% | 8933.59 | 576 / 578 | 100% | 30.37 | 1154 / 1155 |
brain | 99% | 5203.66 | 2623 / 2642 | 100% | 38.15 | 705 / 705 |
adrenal gland | 100% | 8514.05 | 258 / 258 | 97% | 20.66 | 222 / 230 |
adipose | 100% | 11963.71 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 12124.87 | 1335 / 1335 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 100% | 62.08 | 80 / 80 |
lymph node | 0% | 0 | 0 / 0 | 100% | 72.85 | 29 / 29 |
muscle | 100% | 11831.48 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 10577.88 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 32.89 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 21.30 | 1 / 1 |
peripheral blood | 98% | 8880.13 | 910 / 929 | 0% | 0 | 0 / 0 |
heart | 98% | 6598.93 | 842 / 861 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0001732 | Biological process | formation of cytoplasmic translation initiation complex |
GO_0075522 | Biological process | IRES-dependent viral translational initiation |
GO_0006413 | Biological process | translational initiation |
GO_0006508 | Biological process | proteolysis |
GO_0005852 | Cellular component | eukaryotic translation initiation factor 3 complex |
GO_0033290 | Cellular component | eukaryotic 48S preinitiation complex |
GO_0005829 | Cellular component | cytosol |
GO_0045202 | Cellular component | synapse |
GO_0071541 | Cellular component | eukaryotic translation initiation factor 3 complex, eIF3m |
GO_0016282 | Cellular component | eukaryotic 43S preinitiation complex |
GO_0016020 | Cellular component | membrane |
GO_0140492 | Molecular function | metal-dependent deubiquitinase activity |
GO_0003743 | Molecular function | translation initiation factor activity |
GO_0031369 | Molecular function | translation initiation factor binding |
GO_0042802 | Molecular function | identical protein binding |
GO_0005515 | Molecular function | protein binding |
GO_0004843 | Molecular function | cysteine-type deubiquitinase activity |
Gene name | EIF3F |
Protein name | Eukaryotic translation initiation factor 3 subunit F (eIF3f) (Eukaryotic translation initiation factor 3 subunit 5) (eIF-3-epsilon) (eIF3 p47) Eukaryotic translation initiation factor 3 subunit F Eukaryotic translation initiation factor 3 subunit F (eIF3f) (Deubiquitinating enzyme eIF3f) (EC 3.4.19.12) (Eukaryotic translation initiation factor 3 subunit 5) (eIF-3-epsilon) (eIF3 p47) |
Synonyms | EIF3S5 hCG_1784554 IFP38 |
Description | FUNCTION: Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is required for several steps in the initiation of protein synthesis . The eIF-3 complex associates with the 40S ribosome and facilitates the recruitment of eIF-1, eIF-1A, eIF-2:GTP:methionyl-tRNAi and eIF-5 to form the 43S pre-initiation complex (43S PIC). The eIF-3 complex stimulates mRNA recruitment to the 43S PIC and scanning of the mRNA for AUG recognition. The eIF-3 complex is also required for disassembly and recycling of post-termination ribosomal complexes and subsequently prevents premature joining of the 40S and 60S ribosomal subunits prior to initiation . The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation, including cell cycling, differentiation and apoptosis, and uses different modes of RNA stem-loop binding to exert either translational activation or repression . .; FUNCTION: Deubiquitinates activated NOTCH1, promoting its nuclear import, thereby acting as a positive regulator of Notch signaling. . FUNCTION: Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is required for several steps in the initiation of protein synthesis. The eIF-3 complex associates with the 40S ribosome and facilitates the recruitment of eIF-1, eIF-1A, eIF-2:GTP:methionyl-tRNAi and eIF-5 to form the 43S pre-initiation complex (43S PIC). The eIF-3 complex stimulates mRNA recruitment to the 43S PIC and scanning of the mRNA for AUG recognition. The eIF-3 complex is also required for disassembly and recycling of post-termination ribosomal complexes and subsequently prevents premature joining of the 40S and 60S ribosomal subunits prior to initiation. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation, including cell cycling, differentiation and apoptosis, and uses different modes of RNA stem-loop binding to exert either translational activation or repression. . FUNCTION: Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is required for several steps in the initiation of protein synthesis. The eIF-3 complex associates with the 40S ribosome and facilitates the recruitment of eIF-1, eIF-1A, eIF-2:GTP:methionyl-tRNAi and eIF-5 to form the 43S pre-initiation complex (43S PIC). The eIF-3 complex stimulates mRNA recruitment to the 43S PIC and scanning of the mRNA for AUG recognition. The eIF-3 complex is also required for disassembly and recycling of post-termination ribosomal complexes and subsequently prevents premature joining of the 40S and 60S ribosomal subunits prior to initiation. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation, including cell cycling, differentiation and apoptosis, and uses different modes of RNA stem-loop binding to exert either translational activation or repression. . FUNCTION: Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is required for several steps in the initiation of protein synthesis. The eIF-3 complex associates with the 40S ribosome and facilitates the recruitment of eIF-1, eIF-1A, eIF-2:GTP:methionyl-tRNAi and eIF-5 to form the 43S pre-initiation complex (43S PIC). The eIF-3 complex stimulates mRNA recruitment to the 43S PIC and scanning of the mRNA for AUG recognition. The eIF-3 complex is also required for disassembly and recycling of post-termination ribosomal complexes and subsequently prevents premature joining of the 40S and 60S ribosomal subunits prior to initiation. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation, including cell cycling, differentiation and apoptosis, and uses different modes of RNA stem-loop binding to exert either translational activation or repression. . FUNCTION: Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is required for several steps in the initiation of protein synthesis. The eIF-3 complex associates with the 40S ribosome and facilitates the recruitment of eIF-1, eIF-1A, eIF-2:GTP:methionyl-tRNAi and eIF-5 to form the 43S pre-initiation complex (43S PIC). The eIF-3 complex stimulates mRNA recruitment to the 43S PIC and scanning of the mRNA for AUG recognition. The eIF-3 complex is also required for disassembly and recycling of post-termination ribosomal complexes and subsequently prevents premature joining of the 40S and 60S ribosomal subunits prior to initiation. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation, including cell cycling, differentiation and apoptosis, and uses different modes of RNA stem-loop binding to exert either translational activation or repression. . |
Accessions | E9PQV8 ENST00000640290.2 ENST00000677121.1 ENST00000531329.6 A0A7I2V4S2 Q9BX72 ENST00000651655.1 A0A1W2PP79 H0YDT6 B4DMT5 ENST00000531572.2 ENST00000533626.5 A0A7I2YQA0 ENST00000678132.1 B3KSH1 O00303 ENST00000678993.1 |