Name | Number of supported studies | Average coverage | |
---|---|---|---|
lung | 19 studies | 48% ± 17% | |
peripheral blood | 19 studies | 51% ± 14% | |
brain | 15 studies | 31% ± 12% | |
intestine | 12 studies | 40% ± 19% | |
kidney | 9 studies | 40% ± 15% | |
eye | 8 studies | 33% ± 15% | |
bone marrow | 6 studies | 34% ± 18% | |
liver | 6 studies | 39% ± 20% | |
placenta | 5 studies | 52% ± 26% | |
uterus | 5 studies | 53% ± 19% | |
prostate | 5 studies | 34% ± 12% | |
lymph node | 5 studies | 52% ± 12% | |
pancreas | 4 studies | 75% ± 16% | |
breast | 4 studies | 53% ± 5% | |
heart | 3 studies | 25% ± 8% | |
adrenal gland | 3 studies | 44% ± 13% | |
esophagus | 3 studies | 51% ± 29% | |
skin | 3 studies | 35% ± 9% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
adrenal gland | 100% | 23616.02 | 258 / 258 | 100% | 526.51 | 230 / 230 |
esophagus | 100% | 21414.59 | 1445 / 1445 | 100% | 481.24 | 183 / 183 |
lung | 100% | 27317.98 | 578 / 578 | 100% | 587.11 | 1155 / 1155 |
ovary | 100% | 20291.09 | 180 / 180 | 100% | 580.60 | 430 / 430 |
pancreas | 100% | 15800.71 | 328 / 328 | 100% | 547.92 | 178 / 178 |
skin | 100% | 23278.21 | 1809 / 1809 | 100% | 611.75 | 472 / 472 |
stomach | 100% | 18114.90 | 359 / 359 | 100% | 568.46 | 286 / 286 |
thymus | 100% | 23045.01 | 653 / 653 | 100% | 526.02 | 605 / 605 |
uterus | 100% | 23581.54 | 170 / 170 | 100% | 558.18 | 459 / 459 |
breast | 100% | 22161.81 | 459 / 459 | 100% | 780.04 | 1117 / 1118 |
kidney | 100% | 19865.58 | 89 / 89 | 100% | 448.47 | 900 / 901 |
brain | 100% | 17454.86 | 2637 / 2642 | 100% | 373.93 | 705 / 705 |
intestine | 100% | 21456.45 | 966 / 966 | 100% | 633.37 | 526 / 527 |
prostate | 100% | 22379.63 | 245 / 245 | 100% | 720.36 | 501 / 502 |
liver | 100% | 14990.40 | 226 / 226 | 100% | 437.65 | 405 / 406 |
bladder | 100% | 20536.43 | 21 / 21 | 100% | 564.15 | 502 / 504 |
adipose | 100% | 22767.67 | 1204 / 1204 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 100% | 455.22 | 80 / 80 |
lymph node | 0% | 0 | 0 / 0 | 100% | 401.25 | 29 / 29 |
muscle | 100% | 17083.46 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 21982.69 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 427.90 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 628.61 | 1 / 1 |
blood vessel | 100% | 26803.11 | 1334 / 1335 | 0% | 0 | 0 / 0 |
peripheral blood | 100% | 25045.18 | 928 / 929 | 0% | 0 | 0 / 0 |
heart | 99% | 18701.75 | 856 / 861 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0006886 | Biological process | intracellular protein transport |
GO_0002090 | Biological process | regulation of receptor internalization |
GO_0060292 | Biological process | long-term synaptic depression |
GO_1990386 | Biological process | mitotic cleavage furrow ingression |
GO_0098586 | Biological process | cellular response to virus |
GO_0016192 | Biological process | vesicle-mediated transport |
GO_0097061 | Biological process | dendritic spine organization |
GO_0006878 | Biological process | intracellular copper ion homeostasis |
GO_0034315 | Biological process | regulation of Arp2/3 complex-mediated actin nucleation |
GO_0005886 | Cellular component | plasma membrane |
GO_0032991 | Cellular component | protein-containing complex |
GO_0070062 | Cellular component | extracellular exosome |
GO_0043005 | Cellular component | neuron projection |
GO_0031252 | Cellular component | cell leading edge |
GO_0005925 | Cellular component | focal adhesion |
GO_0000139 | Cellular component | Golgi membrane |
GO_0030017 | Cellular component | sarcomere |
GO_0005829 | Cellular component | cytosol |
GO_0014069 | Cellular component | postsynaptic density |
GO_0005737 | Cellular component | cytoplasm |
GO_0019904 | Molecular function | protein domain specific binding |
GO_0000287 | Molecular function | magnesium ion binding |
GO_0005525 | Molecular function | GTP binding |
GO_0003723 | Molecular function | RNA binding |
GO_0005515 | Molecular function | protein binding |
GO_0003924 | Molecular function | GTPase activity |
Gene name | ARF1 |
Protein name | ADP-ribosylation factor 1 ADP ribosylation factor 1 ADP-ribosylation factor ADP-ribosylation factor 1 (EC 3.6.5.2) |
Synonyms | |
Description | FUNCTION: Small GTPase involved in protein trafficking between different compartments . Modulates vesicle budding and uncoating within the Golgi complex . In its GTP-bound form, triggers the recruitment of coatomer proteins to the Golgi membrane . The hydrolysis of ARF1-bound GTP, which is mediated by ARFGAPs proteins, is required for dissociation of coat proteins from Golgi membranes and vesicles . The GTP-bound form interacts with PICK1 to limit PICK1-mediated inhibition of Arp2/3 complex activity; the function is linked to AMPA receptor (AMPAR) trafficking, regulation of synaptic plasticity of excitatory synapses and spine shrinkage during long-term depression (LTD) (By similarity). Plays a key role in the regulation of intestinal stem cells and gut microbiota, and is essential for maintaining intestinal homeostasis (By similarity). Plays also a critical role in mast cell expansion but not in mast cell maturation by facilitating optimal mTORC1 activation (By similarity). .; FUNCTION: (Microbial infection) Functions as an allosteric activator of the cholera toxin catalytic subunit, an ADP-ribosyltransferase. . FUNCTION: GTP-binding protein involved in protein trafficking; modulates vesicle budding and uncoating within the Golgi apparatus. . FUNCTION: GTP-binding protein involved in protein trafficking; modulates vesicle budding and uncoating within the Golgi apparatus. . |
Accessions | ENST00000473949.5 A0A8V8TP92 A0A8V8TNZ5 P84077 ENST00000272102.10 ENST00000469235.5 ENST00000482962.5 ENST00000478336.5 ENST00000478424.5 A0A8V8TNZ0 ENST00000497165.5 ENST00000490705.2 A0A8V8TP99 ENST00000477451.5 ENST00000473546.1 A0A8V8TQC0 A0A8V8TPG9 ENST00000470558.5 A0A8V8TQP8 |