Name | Number of supported studies | Average coverage | |
---|---|---|---|
peripheral blood | 19 studies | 43% ± 12% | |
lung | 18 studies | 50% ± 17% | |
intestine | 12 studies | 47% ± 22% | |
kidney | 9 studies | 46% ± 15% | |
eye | 7 studies | 36% ± 13% | |
bone marrow | 7 studies | 30% ± 13% | |
lymph node | 6 studies | 42% ± 15% | |
brain | 6 studies | 28% ± 8% | |
pancreas | 5 studies | 69% ± 23% | |
uterus | 5 studies | 57% ± 22% | |
liver | 5 studies | 47% ± 23% | |
placenta | 4 studies | 63% ± 20% | |
prostate | 4 studies | 45% ± 13% | |
breast | 4 studies | 49% ± 5% | |
adrenal gland | 3 studies | 42% ± 10% | |
esophagus | 3 studies | 54% ± 30% | |
skin | 3 studies | 43% ± 13% | |
thymus | 3 studies | 64% ± 19% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 1809.73 | 1445 / 1445 | 100% | 196.22 | 183 / 183 |
ovary | 100% | 1597.68 | 180 / 180 | 100% | 83.79 | 430 / 430 |
pancreas | 100% | 2399.18 | 328 / 328 | 100% | 105.91 | 178 / 178 |
stomach | 100% | 1606.25 | 359 / 359 | 100% | 118.00 | 286 / 286 |
uterus | 100% | 1784.72 | 170 / 170 | 100% | 149.29 | 459 / 459 |
skin | 100% | 2549.37 | 1807 / 1809 | 100% | 104.64 | 472 / 472 |
thymus | 100% | 2104.00 | 653 / 653 | 100% | 86.77 | 604 / 605 |
lung | 100% | 2067.48 | 576 / 578 | 100% | 138.61 | 1155 / 1155 |
breast | 100% | 1991.80 | 459 / 459 | 99% | 115.80 | 1111 / 1118 |
kidney | 100% | 2066.43 | 89 / 89 | 99% | 86.48 | 895 / 901 |
bladder | 100% | 1971.81 | 21 / 21 | 99% | 142.30 | 500 / 504 |
intestine | 100% | 1920.86 | 966 / 966 | 99% | 116.67 | 522 / 527 |
prostate | 100% | 2056.19 | 244 / 245 | 99% | 136.97 | 498 / 502 |
adrenal gland | 100% | 2203.09 | 258 / 258 | 98% | 105.73 | 226 / 230 |
liver | 98% | 1696.89 | 222 / 226 | 100% | 87.10 | 406 / 406 |
brain | 98% | 1153.82 | 2596 / 2642 | 100% | 402.01 | 704 / 705 |
adipose | 100% | 2021.34 | 1204 / 1204 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 100% | 50.62 | 80 / 80 |
lymph node | 0% | 0 | 0 / 0 | 100% | 132.12 | 29 / 29 |
spleen | 100% | 1902.67 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 101.90 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 84.07 | 1 / 1 |
blood vessel | 100% | 2543.73 | 1333 / 1335 | 0% | 0 | 0 / 0 |
muscle | 99% | 1205.85 | 792 / 803 | 0% | 0 | 0 / 0 |
heart | 97% | 1870.64 | 833 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 89% | 1604.68 | 829 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0045047 | Biological process | protein targeting to ER |
GO_0031204 | Biological process | post-translational protein targeting to membrane, translocation |
GO_0071261 | Cellular component | Ssh1 translocon complex |
GO_0005829 | Cellular component | cytosol |
GO_0016020 | Cellular component | membrane |
GO_0043022 | Molecular function | ribosome binding |
GO_0008320 | Molecular function | protein transmembrane transporter activity |
GO_0005515 | Molecular function | protein binding |
Gene name | SEC61G |
Protein name | Protein transport protein Sec61 subunit gamma |
Synonyms | |
Description | FUNCTION: Component of SEC61 channel-forming translocon complex that mediates transport of signal peptide-containing precursor polypeptides across the endoplasmic reticulum (ER) (By similarity). Forms a ribosome receptor and a gated pore in the ER membrane, both functions required for cotranslational translocation of nascent polypeptides (By similarity). The SEC61 channel is also involved in ER membrane insertion of transmembrane proteins: it mediates membrane insertion of the first few transmembrane segments of proteins, while insertion of subsequent transmembrane regions of multi-pass membrane proteins is mediated by the multi-pass translocon (MPT) complex . The SEC61 channel cooperates with the translocating protein TRAM1 to import nascent proteins into the ER (By similarity). . |
Accessions | ENST00000415949.5 P60059 ENST00000352861.9 ENST00000395535.7 ENST00000450622.1 |