RPL39 | OmnibusX

I. Expression across cell types

Name	Number of supported studies	Average coverage
B cell	49 studies	92% ± 18%	Explore
natural killer cell	42 studies	91% ± 15%	Explore
macrophage	40 studies	83% ± 25%	Explore
T cell	37 studies	86% ± 23%	Explore
CD8-positive, alpha-beta T cell	37 studies	93% ± 12%	Explore
endothelial cell	36 studies	79% ± 25%	Explore
fibroblast	36 studies	88% ± 18%	Explore
CD4-positive, alpha-beta T cell	34 studies	94% ± 12%	Explore
pericyte	32 studies	83% ± 23%	Explore
conventional dendritic cell	29 studies	97% ± 4%	Explore
plasmacytoid dendritic cell	29 studies	97% ± 5%	Explore
dendritic cell	26 studies	90% ± 19%	Explore
plasma cell	26 studies	84% ± 21%	Explore
smooth muscle cell	26 studies	88% ± 19%	Explore
regulatory T cell	26 studies	95% ± 10%	Explore
classical monocyte	25 studies	95% ± 6%	Explore
non-classical monocyte	24 studies	95% ± 9%	Explore
epithelial cell	24 studies	86% ± 22%	Explore
mast cell	23 studies	89% ± 16%	Explore
monocyte	23 studies	89% ± 18%	Explore
mature NK T cell	23 studies	89% ± 18%	Explore
endothelial cell of lymphatic vessel	22 studies	91% ± 16%	Explore
memory B cell	21 studies	98% ± 4%	Explore
gamma-delta T cell	20 studies	94% ± 8%	Explore
basal cell	19 studies	93% ± 10%	Explore
naive B cell	18 studies	97% ± 6%	Explore
connective tissue cell	18 studies	91% ± 14%	Explore
mucosal invariant T cell	17 studies	94% ± 11%	Explore
naive thymus-derived CD4-positive, alpha-beta T cell	16 studies	95% ± 12%	Explore
ciliated cell	15 studies	85% ± 13%	Explore
CD16-negative, CD56-bright natural killer cell, human	15 studies	89% ± 16%	Explore
CD16-positive, CD56-dim natural killer cell, human	15 studies	89% ± 15%	Explore
endothelial cell of artery	15 studies	82% ± 17%	Explore
capillary endothelial cell	15 studies	74% ± 19%	Explore
naive thymus-derived CD8-positive, alpha-beta T cell	14 studies	94% ± 19%	Explore
neutrophil	14 studies	70% ± 24%	Explore
vein endothelial cell	14 studies	84% ± 18%	Explore
myeloid cell	14 studies	82% ± 26%	Explore
effector memory CD8-positive, alpha-beta T cell	12 studies	87% ± 20%	Explore
innate lymphoid cell	12 studies	95% ± 5%	Explore
plasmablast	12 studies	94% ± 6%	Explore
CD4-positive, alpha-beta memory T cell	12 studies	88% ± 22%	Explore
CD8-positive, alpha-beta memory T cell	12 studies	95% ± 11%	Explore
secretory cell	12 studies	89% ± 22%	Explore
myofibroblast cell	12 studies	93% ± 9%	Explore
goblet cell	12 studies	76% ± 25%	Explore
mesothelial cell	12 studies	80% ± 28%	Explore
erythrocyte	11 studies	69% ± 25%	Explore
T follicular helper cell	10 studies	99% ± 2%	Explore
progenitor cell	10 studies	87% ± 24%	Explore
endothelial cell of vascular tree	10 studies	95% ± 8%	Explore
IgG plasma cell	9 studies	85% ± 16%	Explore
hematopoietic stem cell	9 studies	92% ± 22%	Explore
type I pneumocyte	8 studies	75% ± 23%	Explore
type II pneumocyte	8 studies	84% ± 25%	Explore
club cell	8 studies	87% ± 20%	Explore
leukocyte	8 studies	96% ± 5%	Explore
IgA plasma cell	8 studies	85% ± 21%	Explore
platelet	7 studies	66% ± 23%	Explore
mononuclear phagocyte	7 studies	86% ± 24%	Explore
epithelial cell of proximal tubule	7 studies	81% ± 19%	Explore
abnormal cell	7 studies	82% ± 29%	Explore
enterocyte	7 studies	78% ± 21%	Explore
enteroendocrine cell	7 studies	76% ± 28%	Explore
hematopoietic precursor cell	6 studies	83% ± 27%	Explore
respiratory goblet cell	6 studies	86% ± 14%	Explore
kidney loop of Henle epithelial cell	6 studies	82% ± 21%	Explore
renal alpha-intercalated cell	6 studies	98% ± 2%	Explore
intestinal crypt stem cell	6 studies	70% ± 28%	Explore
transit amplifying cell	6 studies	77% ± 28%	Explore
retinal rod cell	6 studies	47% ± 19%	Explore
microglial cell	6 studies	76% ± 30%	Explore
precursor B cell	6 studies	99% ± 2%	Explore
brush cell	6 studies	73% ± 31%	Explore
immature B cell	6 studies	99% ± 2%	Explore
effector memory CD4-positive, alpha-beta T cell	6 studies	98% ± 3%	Explore
alveolar macrophage	5 studies	95% ± 5%	Explore
CD4-positive helper T cell	5 studies	94% ± 9%	Explore
central memory CD8-positive, alpha-beta T cell	5 studies	97% ± 3%	Explore
effector memory CD8-positive, alpha-beta T cell, terminally differentiated	5 studies	93% ± 5%	Explore
ionocyte	5 studies	91% ± 6%	Explore
astrocyte	5 studies	43% ± 19%	Explore
kidney distal convoluted tubule epithelial cell	5 studies	98% ± 2%	Explore
megakaryocyte	5 studies	84% ± 17%	Explore
erythroblast	5 studies	82% ± 13%	Explore
amacrine cell	5 studies	39% ± 18%	Explore
OFF-bipolar cell	5 studies	50% ± 26%	Explore
retinal cone cell	5 studies	52% ± 27%	Explore
glial cell	5 studies	78% ± 13%	Explore
T-helper 17 cell	5 studies	99% ± 1%	Explore
group 3 innate lymphoid cell	5 studies	95% ± 3%	Explore
neuron	5 studies	82% ± 14%	Explore
Mueller cell	5 studies	48% ± 21%	Explore
double negative thymocyte	5 studies	98% ± 2%	Explore
effector CD4-positive, alpha-beta T cell	5 studies	97% ± 5%	Explore
effector CD8-positive, alpha-beta T cell	5 studies	99% ± 1%	Explore
granulocyte	5 studies	95% ± 5%	Explore
intermediate monocyte	5 studies	92% ± 8%	Explore
CD4-positive, alpha-beta cytotoxic T cell	4 studies	85% ± 20%	Explore
duct epithelial cell	4 studies	96% ± 2%	Explore
exhausted T cell	4 studies	93% ± 10%	Explore
precursor cell	4 studies	80% ± 31%	Explore
pancreatic A cell	4 studies	89% ± 12%	Explore
type B pancreatic cell	4 studies	85% ± 15%	Explore
cholangiocyte	4 studies	39% ± 35%	Explore
endothelial cell of sinusoid	4 studies	55% ± 29%	Explore
glutamatergic neuron	4 studies	25% ± 10%	Explore
glomerular endothelial cell	4 studies	85% ± 10%	Explore
kidney connecting tubule epithelial cell	4 studies	96% ± 3%	Explore
podocyte	4 studies	89% ± 7%	Explore
retinal ganglion cell	4 studies	58% ± 27%	Explore
ON-bipolar cell	4 studies	57% ± 23%	Explore
GABAergic amacrine cell	4 studies	31% ± 13%	Explore
glycinergic amacrine cell	4 studies	34% ± 14%	Explore
lymphocyte	4 studies	99% ± 1%	Explore
pro-B cell	4 studies	98% ± 1%	Explore
neuroendocrine cell	4 studies	94% ± 6%	Explore
adventitial cell	4 studies	86% ± 15%	Explore
mucus secreting cell	4 studies	80% ± 32%	Explore
retina horizontal cell	4 studies	35% ± 19%	Explore
acinar cell	4 studies	85% ± 13%	Explore
germinal center B cell	4 studies	99% ± 1%	Explore
luminal hormone-sensing cell of mammary gland	4 studies	95% ± 8%	Explore
IgM plasma cell	4 studies	90% ± 8%	Explore
melanocyte	4 studies	90% ± 8%	Explore
T-helper 1 cell	4 studies	99% ± 1%	Explore
deuterosomal cell	3 studies	94% ± 1%	Explore
pancreatic D cell	3 studies	91% ± 6%	Explore
renal beta-intercalated cell	3 studies	98% ± 2%	Explore
neural crest cell	3 studies	100% ± 0%	Explore
paneth cell	3 studies	92% ± 9%	Explore
retinal bipolar neuron	3 studies	41% ± 25%	Explore
renal principal cell	3 studies	93% ± 4%	Explore
thymocyte	3 studies	100% ± 0%	Explore
extravillous trophoblast	3 studies	96% ± 3%	Explore
placental villous trophoblast	3 studies	88% ± 17%	Explore
serous secreting cell	3 studies	86% ± 10%	Explore
tissue-resident macrophage	3 studies	69% ± 29%	Explore
intraepithelial lymphocyte	3 studies	76% ± 32%	Explore
rod bipolar cell	3 studies	60% ± 23%	Explore
muscle cell	3 studies	64% ± 10%	Explore
myoepithelial cell	3 studies	99% ± 0%	Explore
hepatocyte	3 studies	75% ± 32%	Explore
inflammatory macrophage	3 studies	87% ± 17%	Explore
luminal cell of prostate epithelium	3 studies	100% ± 0%	Explore
pancreatic ductal cell	3 studies	87% ± 7%	Explore
granulocyte monocyte progenitor cell	3 studies	75% ± 34%	Explore
megakaryocyte-erythroid progenitor cell	3 studies	100% ± 0%	Explore
keratinocyte	3 studies	97% ± 3%	Explore
central memory CD4-positive, alpha-beta T cell	3 studies	99% ± 1%	Explore
double-positive, alpha-beta thymocyte	3 studies	99% ± 0%	Explore
progenitor cell of mammary luminal epithelium	3 studies	100% ± 0%	Explore

II. Expression across tissues

Name	Number of supported studies	Average coverage
lung	18 studies	85% ± 18%	Explore
peripheral blood	18 studies	94% ± 6%	Explore
intestine	14 studies	78% ± 26%	Explore
eye	9 studies	56% ± 23%	Explore
kidney	8 studies	79% ± 23%	Explore
liver	6 studies	68% ± 26%	Explore
brain	6 studies	46% ± 24%	Explore
pancreas	5 studies	81% ± 19%	Explore
bone marrow	5 studies	91% ± 13%	Explore
placenta	5 studies	64% ± 32%	Explore
uterus	5 studies	89% ± 15%	Explore
lymph node	4 studies	99% ± 1%	Explore
heart	4 studies	37% ± 18%	Explore
esophagus	4 studies	72% ± 22%	Explore
prostate	4 studies	87% ± 22%	Explore
breast	4 studies	96% ± 5%	Explore
skin	3 studies	85% ± 17%	Explore
stomach	3 studies	66% ± 22%	Explore
thymus	3 studies	81% ± 26%	Explore

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
ovary	100%	11908.09	180 / 180	100%	466.55	430 / 430
skin	100%	9677.20	1809 / 1809	100%	179.48	472 / 472
esophagus	100%	5302.46	1444 / 1445	100%	379.61	183 / 183
prostate	100%	5516.69	245 / 245	100%	260.08	501 / 502
breast	100%	8754.98	459 / 459	100%	205.46	1113 / 1118
pancreas	99%	5122.48	326 / 328	100%	176.11	178 / 178
thymus	100%	4694.45	651 / 653	100%	177.78	603 / 605
lung	99%	5082.42	575 / 578	100%	231.34	1153 / 1155
uterus	100%	5882.43	170 / 170	99%	221.28	454 / 459
kidney	100%	4284.15	89 / 89	97%	129.49	876 / 901
bladder	100%	6091.86	21 / 21	97%	208.86	488 / 504
stomach	100%	4357.19	359 / 359	97%	271.58	276 / 286
adrenal gland	100%	5310.47	258 / 258	96%	92.67	220 / 230
liver	97%	2923.63	219 / 226	98%	138.70	398 / 406
intestine	100%	5610.66	966 / 966	92%	237.29	483 / 527
brain	92%	2045.04	2440 / 2642	94%	124.88	666 / 705
eye	0%	0	0 / 0	100%	261.01	80 / 80
lymph node	0%	0	0 / 0	100%	422.86	29 / 29
spleen	100%	7569.92	241 / 241	0%	0	0 / 0
tonsil	0%	0	0 / 0	100%	190.10	45 / 45
ureter	0%	0	0 / 0	100%	153.35	1 / 1
adipose	100%	7646.12	1203 / 1204	0%	0	0 / 0
blood vessel	100%	4894.45	1331 / 1335	0%	0	0 / 0
muscle	99%	4872.59	797 / 803	0%	0	0 / 0
heart	96%	3530.90	829 / 861	0%	0	0 / 0
peripheral blood	77%	4629.38	717 / 929	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0

GO_0006412	Biological process	translation
GO_0061844	Biological process	antimicrobial humoral immune response mediated by antimicrobial peptide
GO_0002227	Biological process	innate immune response in mucosa
GO_0050830	Biological process	defense response to Gram-positive bacterium
GO_0002181	Biological process	cytoplasmic translation
GO_0019731	Biological process	antibacterial humoral response
GO_0005615	Cellular component	extracellular space
GO_0022626	Cellular component	cytosolic ribosome
GO_0005829	Cellular component	cytosol
GO_0022625	Cellular component	cytosolic large ribosomal subunit
GO_0003735	Molecular function	structural constituent of ribosome
GO_0003723	Molecular function	RNA binding

Gene name	RPL39
Protein name	Large ribosomal subunit protein eL39 (60S ribosomal protein L39)
Synonyms
Description	FUNCTION: RNA-binding component of the large ribosomal subunit. The ribosome is a large ribonucleoprotein complex responsible for the synthesis of proteins in the cell. .
Accessions	P62891 ENST00000361575.4

RPL39 report

I. Expression across cell types

II. Expression across tissues

III. Associated gene sets

IV. Literature review