RBM3 | OmnibusX

I. Expression across cell types

Name	Number of supported studies	Average coverage
B cell	42 studies	54% ± 17%	Explore
natural killer cell	39 studies	52% ± 16%	Explore
endothelial cell	37 studies	44% ± 20%	Explore
CD8-positive, alpha-beta T cell	37 studies	51% ± 21%	Explore
fibroblast	36 studies	47% ± 20%	Explore
T cell	34 studies	48% ± 19%	Explore
macrophage	34 studies	47% ± 17%	Explore
CD4-positive, alpha-beta T cell	32 studies	55% ± 21%	Explore
pericyte	29 studies	54% ± 18%	Explore
conventional dendritic cell	29 studies	68% ± 16%	Explore
classical monocyte	27 studies	58% ± 16%	Explore
regulatory T cell	26 studies	54% ± 18%	Explore
dendritic cell	24 studies	59% ± 23%	Explore
smooth muscle cell	24 studies	50% ± 14%	Explore
non-classical monocyte	24 studies	65% ± 16%	Explore
plasmacytoid dendritic cell	23 studies	69% ± 14%	Explore
monocyte	21 studies	49% ± 19%	Explore
endothelial cell of lymphatic vessel	21 studies	58% ± 20%	Explore
mature NK T cell	21 studies	49% ± 14%	Explore
plasma cell	20 studies	48% ± 19%	Explore
memory B cell	20 studies	62% ± 14%	Explore
naive B cell	20 studies	51% ± 16%	Explore
epithelial cell	20 studies	47% ± 23%	Explore
basal cell	19 studies	44% ± 19%	Explore
mast cell	18 studies	40% ± 14%	Explore
gamma-delta T cell	18 studies	54% ± 15%	Explore
naive thymus-derived CD4-positive, alpha-beta T cell	17 studies	54% ± 15%	Explore
connective tissue cell	17 studies	52% ± 19%	Explore
mucosal invariant T cell	16 studies	52% ± 20%	Explore
CD16-negative, CD56-bright natural killer cell, human	15 studies	54% ± 19%	Explore
CD16-positive, CD56-dim natural killer cell, human	15 studies	59% ± 13%	Explore
naive thymus-derived CD8-positive, alpha-beta T cell	14 studies	64% ± 13%	Explore
myofibroblast cell	13 studies	52% ± 13%	Explore
myeloid cell	13 studies	55% ± 20%	Explore
plasmablast	12 studies	61% ± 22%	Explore
CD4-positive, alpha-beta memory T cell	12 studies	62% ± 19%	Explore
CD8-positive, alpha-beta memory T cell	12 studies	59% ± 19%	Explore
capillary endothelial cell	12 studies	42% ± 11%	Explore
vein endothelial cell	12 studies	48% ± 15%	Explore
endothelial cell of vascular tree	12 studies	47% ± 22%	Explore
effector memory CD8-positive, alpha-beta T cell	11 studies	53% ± 18%	Explore
innate lymphoid cell	10 studies	50% ± 12%	Explore
ciliated cell	10 studies	32% ± 13%	Explore
secretory cell	10 studies	41% ± 14%	Explore
progenitor cell	10 studies	57% ± 22%	Explore
abnormal cell	10 studies	49% ± 16%	Explore
endothelial cell of artery	10 studies	42% ± 11%	Explore
goblet cell	10 studies	40% ± 16%	Explore
mesothelial cell	10 studies	52% ± 18%	Explore
type I pneumocyte	9 studies	40% ± 15%	Explore
type II pneumocyte	9 studies	46% ± 20%	Explore
leukocyte	9 studies	49% ± 14%	Explore
T follicular helper cell	8 studies	52% ± 9%	Explore
hematopoietic stem cell	8 studies	64% ± 23%	Explore
club cell	7 studies	43% ± 11%	Explore
effector CD8-positive, alpha-beta T cell	7 studies	65% ± 21%	Explore
transit amplifying cell	7 studies	37% ± 20%	Explore
precursor B cell	7 studies	66% ± 20%	Explore
immature B cell	7 studies	63% ± 23%	Explore
alveolar macrophage	6 studies	43% ± 14%	Explore
hematopoietic precursor cell	6 studies	66% ± 33%	Explore
ionocyte	6 studies	35% ± 5%	Explore
respiratory goblet cell	6 studies	46% ± 19%	Explore
platelet	6 studies	28% ± 7%	Explore
effector CD4-positive, alpha-beta T cell	6 studies	68% ± 20%	Explore
mononuclear phagocyte	6 studies	58% ± 18%	Explore
epithelial cell of proximal tubule	6 studies	30% ± 12%	Explore
renal alpha-intercalated cell	6 studies	44% ± 12%	Explore
enterocyte	6 studies	29% ± 14%	Explore
erythrocyte	6 studies	48% ± 22%	Explore
effector memory CD4-positive, alpha-beta T cell	6 studies	65% ± 19%	Explore
CD4-positive helper T cell	5 studies	44% ± 15%	Explore
central memory CD8-positive, alpha-beta T cell	5 studies	54% ± 12%	Explore
effector memory CD8-positive, alpha-beta T cell, terminally differentiated	5 studies	51% ± 11%	Explore
exhausted T cell	5 studies	62% ± 17%	Explore
kidney loop of Henle epithelial cell	5 studies	28% ± 8%	Explore
enteroendocrine cell	5 studies	50% ± 21%	Explore
intestinal crypt stem cell	5 studies	48% ± 13%	Explore
IgA plasma cell	5 studies	28% ± 12%	Explore
IgG plasma cell	5 studies	26% ± 15%	Explore
pro-B cell	5 studies	63% ± 21%	Explore
brush cell	5 studies	26% ± 17%	Explore
neuron	5 studies	55% ± 26%	Explore
double negative thymocyte	5 studies	64% ± 16%	Explore
intermediate monocyte	5 studies	73% ± 15%	Explore
granulocyte	5 studies	45% ± 16%	Explore
deuterosomal cell	4 studies	35% ± 7%	Explore
squamous epithelial cell	4 studies	33% ± 22%	Explore
pancreatic A cell	4 studies	47% ± 2%	Explore
type B pancreatic cell	4 studies	45% ± 12%	Explore
glomerular endothelial cell	4 studies	35% ± 8%	Explore
erythroblast	4 studies	66% ± 22%	Explore
astrocyte	4 studies	35% ± 21%	Explore
microglial cell	4 studies	38% ± 27%	Explore
adventitial cell	4 studies	43% ± 10%	Explore
adipocyte	4 studies	21% ± 3%	Explore
neutrophil	4 studies	26% ± 10%	Explore
germinal center B cell	4 studies	55% ± 21%	Explore
luminal hormone-sensing cell of mammary gland	4 studies	67% ± 9%	Explore
megakaryocyte-erythroid progenitor cell	4 studies	69% ± 28%	Explore
group 3 innate lymphoid cell	4 studies	60% ± 14%	Explore
T-helper 17 cell	4 studies	58% ± 25%	Explore
T-helper 1 cell	4 studies	67% ± 17%	Explore
CD4-positive, alpha-beta cytotoxic T cell	3 studies	61% ± 22%	Explore
duct epithelial cell	3 studies	54% ± 2%	Explore
precursor cell	3 studies	80% ± 11%	Explore
pancreatic D cell	3 studies	48% ± 9%	Explore
monocyte-derived dendritic cell	3 studies	69% ± 31%	Explore
kidney distal convoluted tubule epithelial cell	3 studies	53% ± 25%	Explore
neural crest cell	3 studies	62% ± 5%	Explore
extravillous trophoblast	3 studies	55% ± 24%	Explore
common myeloid progenitor	3 studies	57% ± 27%	Explore
lymphocyte	3 studies	66% ± 6%	Explore
megakaryocyte	3 studies	35% ± 10%	Explore
neuroendocrine cell	3 studies	45% ± 18%	Explore
retinal rod cell	3 studies	33% ± 17%	Explore
mucus secreting cell	3 studies	49% ± 9%	Explore
serous secreting cell	3 studies	51% ± 10%	Explore
tissue-resident macrophage	3 studies	39% ± 13%	Explore
intraepithelial lymphocyte	3 studies	45% ± 20%	Explore
muscle cell	3 studies	42% ± 19%	Explore
myoepithelial cell	3 studies	56% ± 1%	Explore
inflammatory macrophage	3 studies	37% ± 10%	Explore
glutamatergic neuron	3 studies	30% ± 10%	Explore
acinar cell	3 studies	57% ± 18%	Explore
pancreatic ductal cell	3 studies	60% ± 5%	Explore
oligodendrocyte precursor cell	3 studies	39% ± 17%	Explore
granulocyte monocyte progenitor cell	3 studies	52% ± 32%	Explore
glial cell	3 studies	45% ± 24%	Explore
hepatocyte	3 studies	43% ± 19%	Explore
keratinocyte	3 studies	66% ± 13%	Explore
central memory CD4-positive, alpha-beta T cell	3 studies	59% ± 10%	Explore
double-positive, alpha-beta thymocyte	3 studies	77% ± 7%	Explore
progenitor cell of mammary luminal epithelium	3 studies	68% ± 12%	Explore

II. Expression across tissues

Name	Number of supported studies	Average coverage
peripheral blood	19 studies	60% ± 14%	Explore
lung	18 studies	44% ± 16%	Explore
intestine	12 studies	39% ± 16%	Explore
kidney	8 studies	40% ± 15%	Explore
eye	6 studies	31% ± 17%	Explore
lymph node	6 studies	48% ± 16%	Explore
liver	6 studies	37% ± 18%	Explore
brain	6 studies	29% ± 7%	Explore
bone marrow	5 studies	43% ± 23%	Explore
pancreas	4 studies	50% ± 6%	Explore
placenta	4 studies	49% ± 23%	Explore
uterus	4 studies	58% ± 9%	Explore
adipose	4 studies	29% ± 11%	Explore
breast	4 studies	58% ± 11%	Explore
adrenal gland	3 studies	36% ± 15%	Explore
esophagus	3 studies	44% ± 30%	Explore
thymus	3 studies	63% ± 33%	Explore
prostate	3 studies	23% ± 5%	Explore

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
breast	100%	20163.76	459 / 459	100%	165.95	1118 / 1118
uterus	100%	11134.43	170 / 170	100%	99.80	459 / 459
skin	100%	18827.43	1809 / 1809	100%	162.69	471 / 472
lung	100%	14302.59	577 / 578	100%	121.57	1153 / 1155
bladder	100%	10010.52	21 / 21	100%	127.47	502 / 504
pancreas	99%	11099.09	326 / 328	100%	120.79	178 / 178
thymus	100%	11066.26	651 / 653	100%	112.73	603 / 605
adrenal gland	100%	12799.77	258 / 258	99%	109.30	228 / 230
intestine	100%	10508.51	962 / 966	99%	143.68	524 / 527
prostate	100%	9674.03	244 / 245	99%	102.44	499 / 502
esophagus	99%	11470.58	1437 / 1445	99%	72.08	182 / 183
stomach	100%	8841.80	358 / 359	99%	111.53	283 / 286
kidney	99%	9172.63	88 / 89	99%	105.93	893 / 901
ovary	100%	10986.01	180 / 180	96%	61.16	413 / 430
brain	76%	3668.95	2010 / 2642	100%	89.21	704 / 705
liver	83%	4250.66	187 / 226	93%	66.52	378 / 406
adipose	100%	21089.27	1204 / 1204	0%	0	0 / 0
lymph node	0%	0	0 / 0	100%	150.26	29 / 29
spleen	100%	14174.54	241 / 241	0%	0	0 / 0
tonsil	0%	0	0 / 0	100%	119.98	45 / 45
ureter	0%	0	0 / 0	100%	43.26	1 / 1
blood vessel	99%	14644.72	1324 / 1335	0%	0	0 / 0
eye	0%	0	0 / 0	99%	155.62	79 / 80
muscle	94%	7158.42	753 / 803	0%	0	0 / 0
heart	92%	6792.93	796 / 861	0%	0	0 / 0
peripheral blood	87%	7809.20	805 / 929	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0

IV. Literature review

[source]

Gene name	RBM3
Protein name	RNA-binding protein 3 (RNA-binding motif protein 3) (RNPL) LP5581 (RNA binding motif (RNP1, RRM) protein 3, isoform CRA_a) RNA binding motif (RNP1, RRM) protein 3, isoform CRA_b (RNA binding motif protein 3) (cDNA: FLJ23011 fis, clone LNG00572)
Synonyms	RNPL hCG_19813
Description	FUNCTION: Cold-inducible mRNA binding protein that enhances global protein synthesis at both physiological and mild hypothermic temperatures. Reduces the relative abundance of microRNAs, when overexpressed. Enhances phosphorylation of translation initiation factors and active polysome formation (By similarity). .
Accessions	ENST00000354480.2 Q6XYB6 Q9H5V0 ENST00000376755.1 ENST00000376759.8 P98179

GO_0048026	Biological process	positive regulation of mRNA splicing, via spliceosome
GO_0006417	Biological process	regulation of translation
GO_0045727	Biological process	positive regulation of translation
GO_0006396	Biological process	RNA processing
GO_0015934	Cellular component	large ribosomal subunit
GO_0005654	Cellular component	nucleoplasm
GO_0030425	Cellular component	dendrite
GO_0005681	Cellular component	spliceosomal complex
GO_0005737	Cellular component	cytoplasm
GO_0005634	Cellular component	nucleus
GO_0043023	Molecular function	ribosomal large subunit binding
GO_0005515	Molecular function	protein binding
GO_0003723	Molecular function	RNA binding

RBM3 report

I. Expression across cell types

II. Expression across tissues

III. Associated gene sets

IV. Literature review