Name | Number of supported studies | Average coverage | |
---|---|---|---|
peripheral blood | 20 studies | 59% ± 14% | |
lung | 18 studies | 66% ± 14% | |
brain | 16 studies | 36% ± 15% | |
intestine | 14 studies | 56% ± 23% | |
eye | 10 studies | 64% ± 23% | |
kidney | 9 studies | 69% ± 14% | |
lymph node | 7 studies | 53% ± 20% | |
liver | 7 studies | 55% ± 22% | |
bone marrow | 6 studies | 49% ± 16% | |
uterus | 6 studies | 66% ± 23% | |
pancreas | 5 studies | 55% ± 6% | |
placenta | 4 studies | 66% ± 21% | |
prostate | 4 studies | 58% ± 13% | |
breast | 4 studies | 71% ± 9% | |
ovary | 3 studies | 49% ± 15% | |
heart | 3 studies | 42% ± 16% | |
adipose | 3 studies | 28% ± 13% | |
adrenal gland | 3 studies | 60% ± 4% | |
esophagus | 3 studies | 63% ± 22% | |
skin | 3 studies | 57% ± 12% | |
thymus | 3 studies | 77% ± 17% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
kidney | 100% | 12869.98 | 89 / 89 | 100% | 151.05 | 900 / 901 |
brain | 100% | 18862.39 | 2636 / 2642 | 100% | 255.83 | 705 / 705 |
ovary | 100% | 6241.32 | 180 / 180 | 100% | 207.21 | 429 / 430 |
stomach | 100% | 8479.07 | 358 / 359 | 100% | 154.23 | 286 / 286 |
breast | 100% | 7136.84 | 458 / 459 | 100% | 169.67 | 1114 / 1118 |
intestine | 100% | 7811.81 | 964 / 966 | 100% | 158.28 | 525 / 527 |
prostate | 100% | 7570.83 | 244 / 245 | 100% | 175.42 | 501 / 502 |
bladder | 100% | 8082.14 | 21 / 21 | 99% | 146.22 | 500 / 504 |
esophagus | 99% | 7781.51 | 1432 / 1445 | 100% | 119.78 | 183 / 183 |
thymus | 99% | 7702.85 | 647 / 653 | 100% | 205.31 | 604 / 605 |
skin | 99% | 6143.43 | 1787 / 1809 | 100% | 184.37 | 471 / 472 |
lung | 98% | 6947.75 | 568 / 578 | 100% | 143.00 | 1155 / 1155 |
liver | 98% | 6327.33 | 222 / 226 | 100% | 179.22 | 406 / 406 |
uterus | 98% | 7191.93 | 166 / 170 | 100% | 149.35 | 458 / 459 |
adrenal gland | 100% | 9103.63 | 257 / 258 | 97% | 117.67 | 224 / 230 |
pancreas | 80% | 3073.86 | 262 / 328 | 99% | 122.43 | 177 / 178 |
lymph node | 0% | 0 | 0 / 0 | 100% | 159.36 | 29 / 29 |
muscle | 100% | 25769.20 | 803 / 803 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 117.95 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 66.38 | 1 / 1 |
blood vessel | 100% | 13370.81 | 1331 / 1335 | 0% | 0 | 0 / 0 |
spleen | 100% | 6481.25 | 240 / 241 | 0% | 0 | 0 / 0 |
adipose | 99% | 7469.18 | 1197 / 1204 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 99% | 137.29 | 79 / 80 |
heart | 98% | 33888.27 | 844 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 30% | 2323.10 | 283 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0006123 | Biological process | mitochondrial electron transport, cytochrome c to oxygen |
GO_0045333 | Biological process | cellular respiration |
GO_0006120 | Biological process | mitochondrial electron transport, NADH to ubiquinone |
GO_0055085 | Biological process | transmembrane transport |
GO_1904960 | Biological process | positive regulation of cytochrome-c oxidase activity |
GO_0031966 | Cellular component | mitochondrial membrane |
GO_0005751 | Cellular component | mitochondrial respiratory chain complex IV |
GO_0045271 | Cellular component | respiratory chain complex I |
GO_0005743 | Cellular component | mitochondrial inner membrane |
GO_0005739 | Cellular component | mitochondrion |
GO_0044877 | Molecular function | protein-containing complex binding |
GO_0008137 | Molecular function | NADH dehydrogenase (ubiquinone) activity |
GO_0005515 | Molecular function | protein binding |
Gene name | NDUFA4 |
Protein name | Cytochrome c oxidase subunit NDUFA4 (Complex I-MLRQ) (CI-MLRQ) (NADH-ubiquinone oxidoreductase MLRQ subunit) |
Synonyms | |
Description | FUNCTION: Component of the cytochrome c oxidase, the last enzyme in the mitochondrial electron transport chain which drives oxidative phosphorylation. The respiratory chain contains 3 multisubunit complexes succinate dehydrogenase (complex II, CII), ubiquinol-cytochrome c oxidoreductase (cytochrome b-c1 complex, complex III, CIII) and cytochrome c oxidase (complex IV, CIV), that cooperate to transfer electrons derived from NADH and succinate to molecular oxygen, creating an electrochemical gradient over the inner membrane that drives transmembrane transport and the ATP synthase. Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Electrons originating from reduced cytochrome c in the intermembrane space (IMS) are transferred via the dinuclear copper A center (CU(A)) of subunit 2 and heme A of subunit 1 to the active site in subunit 1, a binuclear center (BNC) formed by heme A3 and copper B (CU(B)). The BNC reduces molecular oxygen to 2 water molecules unsing 4 electrons from cytochrome c in the IMS and 4 protons from the mitochondrial matrix . NDUFA4 is required for complex IV maintenance . . |
Accessions | O00483 ENST00000339600.6 |