Name | Number of supported studies | Average coverage | |
---|---|---|---|
peripheral blood | 19 studies | 58% ± 13% | |
lung | 18 studies | 48% ± 17% | |
intestine | 12 studies | 46% ± 21% | |
brain | 11 studies | 30% ± 12% | |
kidney | 9 studies | 41% ± 19% | |
eye | 8 studies | 37% ± 17% | |
lymph node | 7 studies | 54% ± 17% | |
liver | 7 studies | 52% ± 20% | |
bone marrow | 6 studies | 43% ± 27% | |
uterus | 6 studies | 61% ± 19% | |
pancreas | 5 studies | 47% ± 18% | |
placenta | 4 studies | 58% ± 22% | |
prostate | 4 studies | 49% ± 20% | |
breast | 4 studies | 61% ± 8% | |
ovary | 3 studies | 56% ± 11% | |
adrenal gland | 3 studies | 47% ± 17% | |
esophagus | 3 studies | 48% ± 23% | |
thymus | 3 studies | 66% ± 29% | |
adipose | 3 studies | 34% ± 17% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
stomach | 100% | 18795.95 | 359 / 359 | 100% | 231.29 | 286 / 286 |
esophagus | 100% | 23591.10 | 1444 / 1445 | 100% | 190.06 | 183 / 183 |
intestine | 100% | 23276.99 | 966 / 966 | 100% | 282.21 | 526 / 527 |
prostate | 100% | 18806.54 | 245 / 245 | 100% | 234.06 | 501 / 502 |
ovary | 100% | 29949.82 | 180 / 180 | 100% | 159.13 | 429 / 430 |
lung | 100% | 21721.32 | 578 / 578 | 100% | 234.38 | 1152 / 1155 |
pancreas | 100% | 19094.48 | 327 / 328 | 100% | 191.35 | 178 / 178 |
thymus | 100% | 21761.13 | 653 / 653 | 100% | 243.35 | 603 / 605 |
breast | 100% | 25673.65 | 459 / 459 | 100% | 271.65 | 1114 / 1118 |
bladder | 100% | 23637.38 | 21 / 21 | 100% | 228.13 | 502 / 504 |
skin | 100% | 36105.52 | 1809 / 1809 | 100% | 314.25 | 470 / 472 |
uterus | 100% | 26552.34 | 170 / 170 | 100% | 264.04 | 457 / 459 |
brain | 100% | 16420.41 | 2634 / 2642 | 99% | 218.40 | 701 / 705 |
liver | 100% | 12530.64 | 225 / 226 | 99% | 128.87 | 402 / 406 |
kidney | 100% | 14761.87 | 89 / 89 | 97% | 141.87 | 878 / 901 |
adrenal gland | 100% | 24647.50 | 258 / 258 | 97% | 163.51 | 222 / 230 |
adipose | 100% | 27574.11 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 22836.19 | 1335 / 1335 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 332.59 | 29 / 29 |
muscle | 100% | 26997.07 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 23712.55 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 269.66 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 120.69 | 1 / 1 |
eye | 0% | 0 | 0 / 0 | 99% | 247.81 | 79 / 80 |
heart | 96% | 14106.48 | 823 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 75% | 20134.52 | 698 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0001525 | Biological process | angiogenesis |
GO_0071364 | Biological process | cellular response to epidermal growth factor stimulus |
GO_1990830 | Biological process | cellular response to leukemia inhibitory factor |
GO_0046627 | Biological process | negative regulation of insulin receptor signaling pathway |
GO_0048026 | Biological process | positive regulation of mRNA splicing, via spliceosome |
GO_0050730 | Biological process | regulation of peptidyl-tyrosine phosphorylation |
GO_1901838 | Biological process | positive regulation of transcription of nucleolar large rRNA by RNA polymerase I |
GO_0017148 | Biological process | negative regulation of translation |
GO_0045944 | Biological process | positive regulation of transcription by RNA polymerase II |
GO_0005730 | Cellular component | nucleolus |
GO_0005886 | Cellular component | plasma membrane |
GO_0005681 | Cellular component | spliceosomal complex |
GO_0160056 | Cellular component | macropinosome membrane |
GO_0016020 | Cellular component | membrane |
GO_0036464 | Cellular component | cytoplasmic ribonucleoprotein granule |
GO_0070062 | Cellular component | extracellular exosome |
GO_0005654 | Cellular component | nucleoplasm |
GO_0001533 | Cellular component | cornified envelope |
GO_0005938 | Cellular component | cell cortex |
GO_0005694 | Cellular component | chromosome |
GO_1990904 | Cellular component | ribonucleoprotein complex |
GO_0005634 | Cellular component | nucleus |
GO_0048027 | Molecular function | mRNA 5'-UTR binding |
GO_0042162 | Molecular function | telomeric DNA binding |
GO_0042731 | Molecular function | PH domain binding |
GO_0042802 | Molecular function | identical protein binding |
GO_0043560 | Molecular function | insulin receptor substrate binding |
GO_0044547 | Molecular function | DNA topoisomerase binding |
GO_0003723 | Molecular function | RNA binding |
GO_0005515 | Molecular function | protein binding |
Gene name | NCL |
Protein name | Alternative protein NCL Nucleolin (Protein C23) Nucleolin |
Synonyms | hCG_33980 |
Description | FUNCTION: Nucleolin is the major nucleolar protein of growing eukaryotic cells. It is found associated with intranucleolar chromatin and pre-ribosomal particles. It induces chromatin decondensation by binding to histone H1. It is thought to play a role in pre-rRNA transcription and ribosome assembly. May play a role in the process of transcriptional elongation. Binds RNA oligonucleotides with 5'-UUAGGG-3' repeats more tightly than the telomeric single-stranded DNA 5'-TTAGGG-3' repeats. . FUNCTION: Nucleolin is the major nucleolar protein of growing eukaryotic cells. It is found associated with intranucleolar chromatin and pre-ribosomal particles. It induces chromatin decondensation by binding to histone H1. It is thought to play a role in pre-rRNA transcription and ribosome assembly. May play a role in the process of transcriptional elongation. Binds RNA oligonucleotides with 5'-UUAGGG-3' repeats more tightly than the telomeric single-stranded DNA 5'-TTAGGG-3' repeats. . FUNCTION: Nucleolin is the major nucleolar protein of growing eukaryotic cells. It is found associated with intranucleolar chromatin and pre-ribosomal particles. It induces chromatin decondensation by binding to histone H1. It is thought to play a role in pre-rRNA transcription and ribosome assembly. May play a role in the process of transcriptional elongation. Binds RNA oligonucleotides with 5'-UUAGGG-3' repeats more tightly than the telomeric single-stranded DNA 5'-TTAGGG-3' repeats. . FUNCTION: Nucleolin is the major nucleolar protein of growing eukaryotic cells. It is found associated with intranucleolar chromatin and pre-ribosomal particles. It induces chromatin decondensation by binding to histone H1. It is thought to play a role in pre-rRNA transcription and ribosome assembly. May play a role in the process of transcriptional elongation. Binds RNA oligonucleotides with 5'-UUAGGG-3' repeats more tightly than the telomeric single-stranded DNA 5'-TTAGGG-3' repeats. . FUNCTION: Nucleolin is the major nucleolar protein of growing eukaryotic cells. It is found associated with intranucleolar chromatin and pre-ribosomal particles. It induces chromatin decondensation by binding to histone H1. It is thought to play a role in pre-rRNA transcription and ribosome assembly. May play a role in the process of transcriptional elongation. Binds RNA oligonucleotides with 5'-UUAGGG-3' repeats more tightly than the telomeric single-stranded DNA 5'-TTAGGG-3' repeats. . FUNCTION: Nucleolin is the major nucleolar protein of growing eukaryotic cells. It is found associated with intranucleolar chromatin and pre-ribosomal particles. It induces chromatin decondensation by binding to histone H1. It is thought to play a role in pre-rRNA transcription and ribosome assembly. May play a role in the process of transcriptional elongation. Binds RNA oligonucleotides with 5'-UUAGGG-3' repeats more tightly than the telomeric single-stranded DNA 5'-TTAGGG-3' repeats. . FUNCTION: Nucleolin is the major nucleolar protein of growing eukaryotic cells. It is found associated with intranucleolar chromatin and pre-ribosomal particles. It induces chromatin decondensation by binding to histone H1. It is thought to play a role in pre-rRNA transcription and ribosome assembly. May play a role in the process of transcriptional elongation. Binds RNA oligonucleotides with 5'-UUAGGG-3' repeats more tightly than the telomeric single-stranded DNA 5'-TTAGGG-3' repeats. . FUNCTION: Nucleolin is the major nucleolar protein of growing eukaryotic cells. It is found associated with intranucleolar chromatin and pre-ribosomal particles. It induces chromatin decondensation by binding to histone H1. It is thought to play a role in pre-rRNA transcription and ribosome assembly. May play a role in the process of transcriptional elongation. Binds RNA oligonucleotides with 5'-UUAGGG-3' repeats more tightly than the telomeric single-stranded DNA 5'-TTAGGG-3' repeats. . FUNCTION: Nucleolin is the major nucleolar protein of growing eukaryotic cells. It is found associated with intranucleolar chromatin and pre-ribosomal particles. It induces chromatin decondensation by binding to histone H1. It is thought to play a role in pre-rRNA transcription and ribosome assembly. May play a role in the process of transcriptional elongation. Binds RNA oligonucleotides with 5'-UUAGGG-3' repeats more tightly than the telomeric single-stranded DNA 5'-TTAGGG-3' repeats. . FUNCTION: Nucleolin is the major nucleolar protein of growing eukaryotic cells. It is found associated with intranucleolar chromatin and pre-ribosomal particles. It induces chromatin decondensation by binding to histone H1. It is thought to play a role in pre-rRNA transcription and ribosome assembly. May play a role in the process of transcriptional elongation. Binds RNA oligonucleotides with 5'-UUAGGG-3' repeats more tightly than the telomeric single-stranded DNA 5'-TTAGGG-3' repeats. . FUNCTION: Nucleolin is the major nucleolar protein of growing eukaryotic cells. It is found associated with intranucleolar chromatin and pre-ribosomal particles. It induces chromatin decondensation by binding to histone H1. It is thought to play a role in pre-rRNA transcription and ribosome assembly. May play a role in the process of transcriptional elongation. Binds RNA oligonucleotides with 5'-UUAGGG-3' repeats more tightly than the telomeric single-stranded DNA 5'-TTAGGG-3' repeats. . FUNCTION: Nucleolin is the major nucleolar protein of growing eukaryotic cells. It is found associated with intranucleolar chromatin and pre-ribosomal particles. It induces chromatin decondensation by binding to histone H1. It is thought to play a role in pre-rRNA transcription and ribosome assembly. May play a role in the process of transcriptional elongation. Binds RNA oligonucleotides with 5'-UUAGGG-3' repeats more tightly than the telomeric single-stranded DNA 5'-TTAGGG-3' repeats. . |
Accessions | H7BY16 ENST00000678849.1 ENST00000356936.6 ENST00000322723.9 ENST00000453992.6 A0A7I2V5M5 A0A7I2V2U7 A0A7I2V428 L8EAF1 ENST00000679348.1 ENST00000678828.1 ENST00000417652.6 A0A7I2V506 A0A7I2V349 A0A7I2V699 ENST00000678405.1 ENST00000676690.1 ENST00000678364.1 C9JLB1 ENST00000678131.1 ENST00000454824.6 A0A7I2V2S8 ENST00000436894.2 ENST00000676913.1 ENST00000678246.1 B3KM80 A0A7I2V3F3 P19338 |