Name | Number of supported studies | Average coverage | |
---|---|---|---|
peripheral blood | 21 studies | 81% ± 13% | |
lung | 20 studies | 78% ± 21% | |
intestine | 13 studies | 75% ± 23% | |
brain | 13 studies | 39% ± 22% | |
eye | 12 studies | 58% ± 24% | |
kidney | 9 studies | 78% ± 17% | |
liver | 8 studies | 58% ± 27% | |
heart | 7 studies | 35% ± 18% | |
bone marrow | 6 studies | 61% ± 23% | |
lymph node | 6 studies | 82% ± 12% | |
pancreas | 5 studies | 79% ± 25% | |
uterus | 5 studies | 88% ± 15% | |
esophagus | 5 studies | 56% ± 33% | |
prostate | 5 studies | 70% ± 32% | |
breast | 5 studies | 75% ± 30% | |
placenta | 4 studies | 87% ± 19% | |
adipose | 4 studies | 50% ± 23% | |
skin | 4 studies | 61% ± 32% | |
adrenal gland | 3 studies | 75% ± 16% | |
stomach | 3 studies | 53% ± 27% | |
thymus | 3 studies | 82% ± 22% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 67433.18 | 1445 / 1445 | 100% | 188.87 | 183 / 183 |
intestine | 100% | 74003.31 | 966 / 966 | 100% | 359.82 | 527 / 527 |
ovary | 100% | 25445.84 | 180 / 180 | 100% | 342.20 | 430 / 430 |
uterus | 100% | 55037.09 | 170 / 170 | 100% | 532.19 | 459 / 459 |
kidney | 100% | 30383.38 | 89 / 89 | 100% | 324.02 | 900 / 901 |
thymus | 100% | 30295.11 | 652 / 653 | 100% | 398.08 | 605 / 605 |
lung | 100% | 38933.36 | 576 / 578 | 100% | 329.22 | 1155 / 1155 |
breast | 100% | 41028.89 | 459 / 459 | 100% | 387.55 | 1114 / 1118 |
bladder | 100% | 60026.00 | 21 / 21 | 100% | 443.56 | 502 / 504 |
skin | 100% | 26448.87 | 1805 / 1809 | 100% | 233.06 | 471 / 472 |
prostate | 100% | 43102.32 | 244 / 245 | 100% | 387.81 | 501 / 502 |
adrenal gland | 100% | 28139.64 | 258 / 258 | 99% | 305.97 | 228 / 230 |
stomach | 99% | 34860.22 | 354 / 359 | 100% | 280.88 | 285 / 286 |
liver | 88% | 11578.50 | 198 / 226 | 100% | 242.60 | 405 / 406 |
pancreas | 85% | 11926.26 | 280 / 328 | 100% | 464.09 | 178 / 178 |
brain | 74% | 8942.44 | 1968 / 2642 | 100% | 276.66 | 703 / 705 |
adipose | 100% | 42817.22 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 72509.67 | 1335 / 1335 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 507.11 | 29 / 29 |
spleen | 100% | 32645.02 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 384.95 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 363.78 | 1 / 1 |
eye | 0% | 0 | 0 / 0 | 99% | 164.28 | 79 / 80 |
peripheral blood | 94% | 24474.06 | 871 / 929 | 0% | 0 | 0 / 0 |
heart | 92% | 16818.56 | 794 / 861 | 0% | 0 | 0 / 0 |
muscle | 28% | 3005.53 | 226 / 803 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0007519 | Biological process | skeletal muscle tissue development |
GO_0006936 | Biological process | muscle contraction |
GO_0030049 | Biological process | muscle filament sliding |
GO_0005903 | Cellular component | brush border |
GO_0070062 | Cellular component | extracellular exosome |
GO_0005829 | Cellular component | cytosol |
GO_0016460 | Cellular component | myosin II complex |
GO_0031982 | Cellular component | vesicle |
GO_0016461 | Cellular component | unconventional myosin complex |
GO_0016459 | Cellular component | myosin complex |
GO_0016020 | Cellular component | membrane |
GO_0003774 | Molecular function | cytoskeletal motor activity |
GO_0000146 | Molecular function | microfilament motor activity |
GO_0005509 | Molecular function | calcium ion binding |
GO_0005515 | Molecular function | protein binding |
GO_0008307 | Molecular function | structural constituent of muscle |
Gene name | MYL6 |
Protein name | Myosin light chain 6 Myosin light chain 6 (cDNA FLJ56329, highly similar to Myosin light polypeptide 6) Myosin light polypeptide 6 (17 kDa myosin light chain) (LC17) (Myosin light chain 3) (MLC-3) (Myosin light chain alkali 3) (Myosin light chain A3) (Smooth muscle and nonmuscle myosin light chain alkali 6) Myosin light chain 6 (Myosin, light polypeptide 6, alkali, smooth muscle and non-muscle, isoform CRA_c) MYL6 protein Myosin light polypeptide 6 |
Synonyms | hCG_2039617 |
Description | FUNCTION: Regulatory light chain of myosin. Does not bind calcium. FUNCTION: Regulatory light chain of myosin. Does not bind calcium. . |
Accessions | ENST00000548293.5 [P60660-1] H0YI43 ENST00000293422.9 ENST00000548400.5 F8VPF3 F8W1R7 ENST00000546845.1 P60660 ENST00000549566.5 ENST00000550697.6 [P60660-1] B7Z6Z4 J3KND3 ENST00000548580.5 ENST00000549392.5 ENST00000551589.5 G3V1Y7 G8JLA2 F8VXL3 ENST00000547408.5 F8VZU9 ENST00000348108.8 G3V1V0 ENST00000536128.5 Q6IBG5 ENST00000547649.5 [P60660-2] ENST00000549017.5 F8W180 |