Name | Number of supported studies | Average coverage | |
---|---|---|---|
peripheral blood | 20 studies | 67% ± 15% | |
lung | 19 studies | 68% ± 19% | |
intestine | 13 studies | 54% ± 22% | |
kidney | 9 studies | 66% ± 13% | |
eye | 9 studies | 36% ± 17% | |
brain | 7 studies | 39% ± 9% | |
bone marrow | 6 studies | 41% ± 18% | |
lymph node | 6 studies | 61% ± 19% | |
liver | 6 studies | 57% ± 21% | |
pancreas | 5 studies | 68% ± 20% | |
uterus | 5 studies | 73% ± 20% | |
placenta | 4 studies | 78% ± 22% | |
skin | 4 studies | 56% ± 14% | |
adipose | 4 studies | 30% ± 18% | |
prostate | 4 studies | 70% ± 12% | |
breast | 4 studies | 73% ± 4% | |
heart | 3 studies | 36% ± 12% | |
adrenal gland | 3 studies | 62% ± 7% | |
esophagus | 3 studies | 70% ± 24% | |
thymus | 3 studies | 74% ± 19% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
bladder | 100% | 13376.86 | 21 / 21 | 100% | 942.01 | 504 / 504 |
kidney | 100% | 22927.66 | 89 / 89 | 100% | 679.00 | 901 / 901 |
lung | 100% | 22219.79 | 578 / 578 | 100% | 791.03 | 1155 / 1155 |
ovary | 100% | 11271.92 | 180 / 180 | 100% | 742.11 | 430 / 430 |
thymus | 100% | 18674.43 | 653 / 653 | 100% | 1108.09 | 605 / 605 |
uterus | 100% | 13916.99 | 170 / 170 | 100% | 955.72 | 459 / 459 |
intestine | 100% | 14533.79 | 966 / 966 | 100% | 771.19 | 526 / 527 |
stomach | 100% | 11567.27 | 359 / 359 | 100% | 666.20 | 285 / 286 |
adrenal gland | 100% | 21227.82 | 258 / 258 | 100% | 476.15 | 229 / 230 |
breast | 100% | 18530.91 | 459 / 459 | 99% | 859.93 | 1112 / 1118 |
esophagus | 100% | 15430.26 | 1445 / 1445 | 99% | 726.01 | 182 / 183 |
skin | 100% | 18547.81 | 1809 / 1809 | 99% | 480.17 | 469 / 472 |
prostate | 100% | 12876.28 | 245 / 245 | 99% | 588.68 | 498 / 502 |
liver | 99% | 8462.74 | 224 / 226 | 100% | 552.58 | 405 / 406 |
brain | 98% | 6834.17 | 2580 / 2642 | 99% | 314.47 | 700 / 705 |
pancreas | 97% | 6386.04 | 318 / 328 | 99% | 906.48 | 177 / 178 |
adipose | 100% | 17808.99 | 1204 / 1204 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 642.19 | 29 / 29 |
spleen | 100% | 13712.40 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 783.26 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 867.46 | 1 / 1 |
blood vessel | 100% | 18232.54 | 1333 / 1335 | 0% | 0 | 0 / 0 |
heart | 99% | 9718.24 | 854 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 99% | 344.03 | 79 / 80 |
peripheral blood | 99% | 14803.68 | 916 / 929 | 0% | 0 | 0 / 0 |
muscle | 99% | 8007.58 | 791 / 803 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0008360 | Biological process | regulation of cell shape |
GO_0005903 | Cellular component | brush border |
GO_0001725 | Cellular component | stress fiber |
GO_0030016 | Cellular component | myofibril |
GO_0070062 | Cellular component | extracellular exosome |
GO_0005829 | Cellular component | cytosol |
GO_0016460 | Cellular component | myosin II complex |
GO_0005938 | Cellular component | cell cortex |
GO_0030018 | Cellular component | Z disc |
GO_0045177 | Cellular component | apical part of cell |
GO_0005737 | Cellular component | cytoplasm |
GO_0032036 | Molecular function | myosin heavy chain binding |
GO_0005509 | Molecular function | calcium ion binding |
GO_0005515 | Molecular function | protein binding |
Gene name | MYL12B |
Protein name | Myosin regulatory light chain 12B (MLC-2A) (MLC-2) (Myosin regulatory light chain 2-B, smooth muscle isoform) (Myosin regulatory light chain 20 kDa) (MLC20) (Myosin regulatory light chain MRLC2) (SHUJUN-1) |
Synonyms | MRLC2 MYLC2B |
Description | FUNCTION: Myosin regulatory subunit that plays an important role in regulation of both smooth muscle and nonmuscle cell contractile activity via its phosphorylation. Phosphorylation triggers actin polymerization in vascular smooth muscle. Implicated in cytokinesis, receptor capping, and cell locomotion. . |
Accessions | ENST00000581193.5 ENST00000648965.1 ENST00000400175.9 ENST00000584539.1 O14950 ENST00000237500.10 |