Name | Number of supported studies | Average coverage | |
---|---|---|---|
peripheral blood | 20 studies | 56% ± 15% | |
lung | 19 studies | 44% ± 16% | |
brain | 13 studies | 32% ± 14% | |
intestine | 12 studies | 44% ± 21% | |
eye | 10 studies | 30% ± 14% | |
kidney | 9 studies | 43% ± 17% | |
bone marrow | 7 studies | 37% ± 20% | |
lymph node | 6 studies | 58% ± 15% | |
liver | 6 studies | 46% ± 20% | |
pancreas | 5 studies | 51% ± 17% | |
uterus | 5 studies | 52% ± 19% | |
adipose | 5 studies | 23% ± 11% | |
placenta | 4 studies | 54% ± 21% | |
breast | 4 studies | 55% ± 10% | |
adrenal gland | 3 studies | 43% ± 17% | |
esophagus | 3 studies | 56% ± 28% | |
thymus | 3 studies | 65% ± 31% | |
prostate | 3 studies | 47% ± 11% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
breast | 100% | 11628.10 | 459 / 459 | 100% | 222.49 | 1118 / 1118 |
esophagus | 100% | 10301.93 | 1445 / 1445 | 100% | 137.51 | 183 / 183 |
ovary | 100% | 17435.36 | 180 / 180 | 100% | 185.99 | 430 / 430 |
pancreas | 100% | 7126.51 | 328 / 328 | 100% | 110.14 | 178 / 178 |
stomach | 100% | 8213.75 | 359 / 359 | 100% | 151.05 | 286 / 286 |
uterus | 100% | 13269.34 | 170 / 170 | 100% | 127.66 | 459 / 459 |
lung | 100% | 8480.59 | 577 / 578 | 100% | 128.33 | 1155 / 1155 |
intestine | 100% | 10641.23 | 966 / 966 | 100% | 158.85 | 526 / 527 |
thymus | 100% | 9088.11 | 653 / 653 | 100% | 126.62 | 603 / 605 |
brain | 100% | 6324.82 | 2633 / 2642 | 100% | 101.02 | 705 / 705 |
bladder | 100% | 12024.90 | 21 / 21 | 100% | 126.46 | 502 / 504 |
prostate | 100% | 10413.39 | 245 / 245 | 100% | 135.40 | 500 / 502 |
skin | 100% | 11431.25 | 1809 / 1809 | 99% | 136.70 | 465 / 472 |
kidney | 100% | 8721.11 | 89 / 89 | 98% | 90.50 | 885 / 901 |
adrenal gland | 100% | 8286.14 | 258 / 258 | 95% | 72.28 | 218 / 230 |
liver | 96% | 3300.81 | 218 / 226 | 98% | 81.55 | 396 / 406 |
adipose | 100% | 11276.47 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 11082.78 | 1335 / 1335 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 202.53 | 29 / 29 |
muscle | 100% | 10763.87 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 7742.79 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 110.98 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 85.63 | 1 / 1 |
eye | 0% | 0 | 0 / 0 | 99% | 187.91 | 79 / 80 |
peripheral blood | 99% | 10637.57 | 916 / 929 | 0% | 0 | 0 / 0 |
heart | 97% | 7300.25 | 838 / 861 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0001732 | Biological process | formation of cytoplasmic translation initiation complex |
GO_0032435 | Biological process | negative regulation of proteasomal ubiquitin-dependent protein catabolic process |
GO_0006446 | Biological process | regulation of translational initiation |
GO_0006413 | Biological process | translational initiation |
GO_0005852 | Cellular component | eukaryotic translation initiation factor 3 complex |
GO_0033290 | Cellular component | eukaryotic 48S preinitiation complex |
GO_0070062 | Cellular component | extracellular exosome |
GO_0005829 | Cellular component | cytosol |
GO_0071541 | Cellular component | eukaryotic translation initiation factor 3 complex, eIF3m |
GO_0016020 | Cellular component | membrane |
GO_0016282 | Cellular component | eukaryotic 43S preinitiation complex |
GO_0140492 | Molecular function | metal-dependent deubiquitinase activity |
GO_0003743 | Molecular function | translation initiation factor activity |
GO_0005515 | Molecular function | protein binding |
GO_0008237 | Molecular function | metallopeptidase activity |
GO_0003723 | Molecular function | RNA binding |
Gene name | EIF3H |
Protein name | Eukaryotic translation initiation factor 3 subunit H (eIF3h) (Eukaryotic translation initiation factor 3 subunit 3) (eIF-3 gamma) (eIF3 p40 subunit) Eukaryotic translation initiation factor 3 subunit H (eIF3h) (Eukaryotic translation initiation factor 3 subunit 3) (eIF-3-gamma) (eIF3 p40 subunit) Eukaryotic translation initiation factor 3 subunit H |
Synonyms | EIF3S3 hCG_20900 |
Description | FUNCTION: Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is required for several steps in the initiation of protein synthesis . The eIF-3 complex associates with the 40S ribosome and facilitates the recruitment of eIF-1, eIF-1A, eIF-2:GTP:methionyl-tRNAi and eIF-5 to form the 43S pre-initiation complex (43S PIC). The eIF-3 complex stimulates mRNA recruitment to the 43S PIC and scanning of the mRNA for AUG recognition. The eIF-3 complex is also required for disassembly and recycling of post-termination ribosomal complexes and subsequently prevents premature joining of the 40S and 60S ribosomal subunits prior to initiation . The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation, including cell cycling, differentiation and apoptosis, and uses different modes of RNA stem-loop binding to exert either translational activation or repression . . FUNCTION: Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is required for several steps in the initiation of protein synthesis. The eIF-3 complex associates with the 40S ribosome and facilitates the recruitment of eIF-1, eIF-1A, eIF-2:GTP:methionyl-tRNAi and eIF-5 to form the 43S pre-initiation complex (43S PIC). The eIF-3 complex stimulates mRNA recruitment to the 43S PIC and scanning of the mRNA for AUG recognition. The eIF-3 complex is also required for disassembly and recycling of post-termination ribosomal complexes and subsequently prevents premature joining of the 40S and 60S ribosomal subunits prior to initiation. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation, including cell cycling, differentiation and apoptosis, and uses different modes of RNA stem-loop binding to exert either translational activation or repression. . FUNCTION: Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is required for several steps in the initiation of protein synthesis. The eIF-3 complex associates with the 40S ribosome and facilitates the recruitment of eIF-1, eIF-1A, eIF-2:GTP:methionyl-tRNAi and eIF-5 to form the 43S pre-initiation complex (43S PIC). The eIF-3 complex stimulates mRNA recruitment to the 43S PIC and scanning of the mRNA for AUG recognition. The eIF-3 complex is also required for disassembly and recycling of post-termination ribosomal complexes and subsequently prevents premature joining of the 40S and 60S ribosomal subunits prior to initiation. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation, including cell cycling, differentiation and apoptosis, and uses different modes of RNA stem-loop binding to exert either translational activation or repression. . FUNCTION: Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is required for several steps in the initiation of protein synthesis. The eIF-3 complex associates with the 40S ribosome and facilitates the recruitment of eIF-1, eIF-1A, eIF-2:GTP:methionyl-tRNAi and eIF-5 to form the 43S pre-initiation complex (43S PIC). The eIF-3 complex stimulates mRNA recruitment to the 43S PIC and scanning of the mRNA for AUG recognition. The eIF-3 complex is also required for disassembly and recycling of post-termination ribosomal complexes and subsequently prevents premature joining of the 40S and 60S ribosomal subunits prior to initiation. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation, including cell cycling, differentiation and apoptosis, and uses different modes of RNA stem-loop binding to exert either translational activation or repression. . |
Accessions | ENST00000276682.8 B3KS98 ENST00000518995.5 E5RFW7 ENST00000522800.5 Q5BKY2 ENST00000521861.6 E5RGU4 Q6IB98 E5RHC7 ENST00000519046.5 E5RH59 E5RJT0 O15372 ENST00000518949.5 ENST00000520813.1 E5RFH0 ENST00000522453.1 |