DEK | OmnibusX

I. Expression across cell types

Name	Number of supported studies	Average coverage
B cell	37 studies	35% ± 12%	Explore
natural killer cell	37 studies	41% ± 17%	Explore
endothelial cell	37 studies	35% ± 13%	Explore
fibroblast	37 studies	32% ± 11%	Explore
macrophage	35 studies	40% ± 12%	Explore
CD8-positive, alpha-beta T cell	34 studies	39% ± 17%	Explore
T cell	32 studies	39% ± 17%	Explore
pericyte	31 studies	40% ± 13%	Explore
CD4-positive, alpha-beta T cell	30 studies	39% ± 16%	Explore
conventional dendritic cell	29 studies	49% ± 15%	Explore
smooth muscle cell	26 studies	38% ± 14%	Explore
classical monocyte	24 studies	46% ± 14%	Explore
regulatory T cell	24 studies	37% ± 9%	Explore
non-classical monocyte	22 studies	42% ± 13%	Explore
monocyte	21 studies	43% ± 16%	Explore
dendritic cell	20 studies	45% ± 22%	Explore
endothelial cell of lymphatic vessel	20 studies	36% ± 14%	Explore
memory B cell	20 studies	36% ± 10%	Explore
basal cell	20 studies	37% ± 14%	Explore
mature NK T cell	19 studies	35% ± 9%	Explore
naive B cell	18 studies	28% ± 8%	Explore
naive thymus-derived CD4-positive, alpha-beta T cell	17 studies	32% ± 10%	Explore
gamma-delta T cell	17 studies	41% ± 12%	Explore
mast cell	16 studies	29% ± 13%	Explore
epithelial cell	16 studies	43% ± 20%	Explore
CD16-positive, CD56-dim natural killer cell, human	15 studies	40% ± 9%	Explore
ciliated cell	15 studies	39% ± 16%	Explore
connective tissue cell	15 studies	40% ± 14%	Explore
CD16-negative, CD56-bright natural killer cell, human	15 studies	35% ± 10%	Explore
myeloid cell	15 studies	43% ± 21%	Explore
plasmacytoid dendritic cell	14 studies	31% ± 9%	Explore
myofibroblast cell	14 studies	39% ± 11%	Explore
naive thymus-derived CD8-positive, alpha-beta T cell	13 studies	33% ± 9%	Explore
mucosal invariant T cell	13 studies	35% ± 7%	Explore
CD8-positive, alpha-beta memory T cell	12 studies	40% ± 11%	Explore
capillary endothelial cell	12 studies	29% ± 11%	Explore
vein endothelial cell	12 studies	33% ± 12%	Explore
endothelial cell of vascular tree	12 studies	37% ± 13%	Explore
CD4-positive, alpha-beta memory T cell	11 studies	37% ± 8%	Explore
effector memory CD8-positive, alpha-beta T cell	11 studies	39% ± 11%	Explore
secretory cell	10 studies	32% ± 13%	Explore
progenitor cell	10 studies	42% ± 17%	Explore
innate lymphoid cell	10 studies	46% ± 11%	Explore
abnormal cell	10 studies	40% ± 18%	Explore
endothelial cell of artery	10 studies	31% ± 9%	Explore
microglial cell	10 studies	28% ± 12%	Explore
effector CD8-positive, alpha-beta T cell	9 studies	47% ± 17%	Explore
leukocyte	9 studies	39% ± 16%	Explore
mesothelial cell	9 studies	36% ± 17%	Explore
T follicular helper cell	8 studies	38% ± 7%	Explore
oligodendrocyte precursor cell	8 studies	31% ± 13%	Explore
alveolar macrophage	7 studies	31% ± 8%	Explore
type II pneumocyte	7 studies	29% ± 12%	Explore
goblet cell	7 studies	34% ± 12%	Explore
hematopoietic stem cell	7 studies	52% ± 9%	Explore
precursor B cell	7 studies	40% ± 20%	Explore
astrocyte	7 studies	27% ± 8%	Explore
oligodendrocyte	7 studies	27% ± 7%	Explore
type I pneumocyte	6 studies	34% ± 13%	Explore
hematopoietic precursor cell	6 studies	58% ± 21%	Explore
club cell	6 studies	34% ± 14%	Explore
ionocyte	6 studies	30% ± 10%	Explore
effector CD4-positive, alpha-beta T cell	6 studies	38% ± 14%	Explore
mononuclear phagocyte	6 studies	43% ± 13%	Explore
transit amplifying cell	6 studies	54% ± 24%	Explore
retinal cone cell	6 studies	45% ± 23%	Explore
lymphocyte	6 studies	43% ± 23%	Explore
neuron	6 studies	35% ± 14%	Explore
retinal rod cell	6 studies	30% ± 11%	Explore
effector memory CD4-positive, alpha-beta T cell	6 studies	47% ± 7%	Explore
CD4-positive helper T cell	5 studies	32% ± 16%	Explore
exhausted T cell	5 studies	43% ± 12%	Explore
kidney loop of Henle epithelial cell	5 studies	20% ± 2%	Explore
enterocyte	5 studies	23% ± 7%	Explore
pro-B cell	5 studies	55% ± 12%	Explore
granulocyte	5 studies	30% ± 10%	Explore
GABAergic neuron	5 studies	26% ± 6%	Explore
glutamatergic neuron	5 studies	28% ± 7%	Explore
interneuron	5 studies	29% ± 10%	Explore
deuterosomal cell	4 studies	27% ± 8%	Explore
respiratory goblet cell	4 studies	27% ± 15%	Explore
platelet	4 studies	25% ± 6%	Explore
pancreatic A cell	4 studies	47% ± 3%	Explore
type B pancreatic cell	4 studies	43% ± 15%	Explore
enteroendocrine cell	4 studies	36% ± 5%	Explore
intestinal crypt stem cell	4 studies	33% ± 11%	Explore
glial cell	4 studies	37% ± 22%	Explore
erythroblast	4 studies	63% ± 29%	Explore
brush cell	4 studies	31% ± 11%	Explore
adventitial cell	4 studies	21% ± 7%	Explore
Mueller cell	4 studies	32% ± 8%	Explore
germinal center B cell	4 studies	42% ± 13%	Explore
intermediate monocyte	4 studies	54% ± 19%	Explore
luminal hormone-sensing cell of mammary gland	4 studies	33% ± 7%	Explore
erythrocyte	4 studies	51% ± 25%	Explore
group 3 innate lymphoid cell	4 studies	58% ± 11%	Explore
T-helper 17 cell	4 studies	48% ± 18%	Explore
effector memory CD8-positive, alpha-beta T cell, terminally differentiated	4 studies	32% ± 5%	Explore
double negative thymocyte	4 studies	48% ± 12%	Explore
precursor cell	3 studies	59% ± 17%	Explore
pancreatic D cell	3 studies	46% ± 11%	Explore
monocyte-derived dendritic cell	3 studies	49% ± 25%	Explore
glomerular endothelial cell	3 studies	20% ± 2%	Explore
kidney distal convoluted tubule epithelial cell	3 studies	47% ± 20%	Explore
epithelial cell of proximal tubule	3 studies	21% ± 7%	Explore
neural crest cell	3 studies	67% ± 23%	Explore
retinal bipolar neuron	3 studies	29% ± 9%	Explore
extravillous trophoblast	3 studies	40% ± 4%	Explore
placental villous trophoblast	3 studies	56% ± 12%	Explore
immature B cell	3 studies	28% ± 4%	Explore
amacrine cell	3 studies	30% ± 10%	Explore
serous secreting cell	3 studies	19% ± 4%	Explore
tissue-resident macrophage	3 studies	31% ± 5%	Explore
rod bipolar cell	3 studies	23% ± 8%	Explore
myoepithelial cell	3 studies	38% ± 5%	Explore
luminal cell of prostate epithelium	3 studies	33% ± 9%	Explore
muscle cell	3 studies	36% ± 13%	Explore
pancreatic ductal cell	3 studies	56% ± 7%	Explore
neural progenitor cell	3 studies	38% ± 11%	Explore
megakaryocyte-erythroid progenitor cell	3 studies	77% ± 13%	Explore
neutrophil	3 studies	23% ± 4%	Explore
melanocyte	3 studies	23% ± 3%	Explore
keratinocyte	3 studies	34% ± 7%	Explore
T-helper 1 cell	3 studies	41% ± 2%	Explore
central memory CD4-positive, alpha-beta T cell	3 studies	39% ± 4%	Explore
central memory CD8-positive, alpha-beta T cell	3 studies	38% ± 4%	Explore
CD4-positive, alpha-beta cytotoxic T cell	3 studies	47% ± 14%	Explore
progenitor cell of mammary luminal epithelium	3 studies	27% ± 5%	Explore
hepatocyte	3 studies	38% ± 19%	Explore

II. Expression across tissues

Name	Number of supported studies	Average coverage
peripheral blood	17 studies	41% ± 10%	Explore
lung	16 studies	39% ± 12%	Explore
intestine	11 studies	31% ± 14%	Explore
brain	11 studies	27% ± 7%	Explore
eye	9 studies	28% ± 11%	Explore
kidney	6 studies	34% ± 10%	Explore
lymph node	6 studies	40% ± 20%	Explore
bone marrow	5 studies	33% ± 13%	Explore
liver	5 studies	45% ± 23%	Explore
pancreas	4 studies	44% ± 10%	Explore
uterus	4 studies	47% ± 14%	Explore
breast	4 studies	33% ± 9%	Explore
placenta	3 studies	47% ± 1%	Explore
ovary	3 studies	28% ± 8%	Explore
prostate	3 studies	27% ± 7%	Explore

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
esophagus	100%	6379.35	1445 / 1445	100%	95.88	183 / 183
ovary	100%	5509.56	180 / 180	100%	79.68	430 / 430
lung	100%	6224.41	577 / 578	100%	81.71	1153 / 1155
breast	100%	6607.52	459 / 459	99%	74.61	1112 / 1118
uterus	100%	7410.67	170 / 170	99%	126.05	455 / 459
stomach	100%	4296.72	359 / 359	99%	84.32	283 / 286
thymus	100%	8612.83	653 / 653	99%	72.13	597 / 605
intestine	100%	7689.35	966 / 966	98%	88.13	519 / 527
bladder	100%	6426.00	21 / 21	98%	84.49	492 / 504
brain	98%	2995.43	2576 / 2642	100%	47.96	703 / 705
prostate	100%	5515.78	244 / 245	98%	43.28	490 / 502
pancreas	96%	2298.27	314 / 328	99%	47.86	176 / 178
skin	100%	7075.02	1806 / 1809	91%	64.17	429 / 472
kidney	100%	3636.87	89 / 89	87%	36.84	787 / 901
liver	99%	2538.10	224 / 226	88%	34.95	358 / 406
adrenal gland	100%	4123.15	258 / 258	79%	22.21	182 / 230
adipose	100%	6615.55	1204 / 1204	0%	0	0 / 0
blood vessel	100%	7122.96	1335 / 1335	0%	0	0 / 0
lymph node	0%	0	0 / 0	100%	90.57	29 / 29
muscle	100%	5596.98	803 / 803	0%	0	0 / 0
spleen	100%	4608.05	241 / 241	0%	0	0 / 0
tonsil	0%	0	0 / 0	100%	125.60	45 / 45
ureter	0%	0	0 / 0	100%	15.74	1 / 1
heart	94%	3340.39	812 / 861	0%	0	0 / 0
peripheral blood	80%	5328.18	743 / 929	0%	0	0 / 0
eye	0%	0	0 / 0	57%	18.58	46 / 80
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0

III. Associated gene sets

GO_0006366	Biological process	transcription by RNA polymerase II
GO_2000779	Biological process	regulation of double-strand break repair
GO_0006357	Biological process	regulation of transcription by RNA polymerase II
GO_0007165	Biological process	signal transduction
GO_0006338	Biological process	chromatin remodeling
GO_2001032	Biological process	regulation of double-strand break repair via nonhomologous end joining
GO_0045945	Biological process	positive regulation of transcription by RNA polymerase III
GO_0045943	Biological process	positive regulation of transcription by RNA polymerase I
GO_0019079	Biological process	viral genome replication
GO_0045944	Biological process	positive regulation of transcription by RNA polymerase II
GO_0005730	Cellular component	nucleolus
GO_0110016	Cellular component	B-WICH complex
GO_0005654	Cellular component	nucleoplasm
GO_0043292	Cellular component	contractile muscle fiber
GO_0005634	Cellular component	nucleus
GO_0003677	Molecular function	DNA binding
GO_0042393	Molecular function	histone binding
GO_0003723	Molecular function	RNA binding
GO_0005515	Molecular function	protein binding

Gene name	DEK
Protein name	DEK proto-oncogene (cDNA FLJ53031, highly similar to Protein DEK) DEK oncogene (DNA binding), isoform CRA_b (DEK proto-oncogene) Protein DEK DEK proto-oncogene Alternative protein DEK
Synonyms	hCG_36749
Description	FUNCTION: Involved in chromatin organization. .
Accessions	ENST00000244776.11 [P35659-2] ENST00000651992.1 B4DFG0 ENST00000515770.2 A0A494C198 L8EA44 P35659 ENST00000505224.5 ENST00000507591.2 A0A494C028 H0Y993 D6RDA2 ENST00000503715.5 ENST00000652689.1 [P35659-1] D6R9L5 ENST00000651624.1 H0Y8X0 ENST00000515742.2 ENST00000652576.1 [P35659-1]

DEK report

I. Expression across cell types

II. Expression across tissues

III. Associated gene sets

IV. Literature review