Name | Number of supported studies | Average coverage | |
---|---|---|---|
lung | 18 studies | 50% ± 17% | |
peripheral blood | 18 studies | 37% ± 6% | |
intestine | 12 studies | 34% ± 11% | |
kidney | 9 studies | 42% ± 13% | |
bone marrow | 6 studies | 25% ± 8% | |
pancreas | 5 studies | 55% ± 22% | |
placenta | 5 studies | 43% ± 13% | |
uterus | 5 studies | 52% ± 19% | |
brain | 5 studies | 43% ± 20% | |
liver | 5 studies | 28% ± 6% | |
eye | 4 studies | 30% ± 15% | |
prostate | 4 studies | 50% ± 11% | |
lymph node | 4 studies | 37% ± 26% | |
breast | 4 studies | 39% ± 5% | |
adrenal gland | 3 studies | 32% ± 7% | |
esophagus | 3 studies | 48% ± 9% | |
thymus | 3 studies | 35% ± 5% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
kidney | 100% | 6944.26 | 89 / 89 | 100% | 187.54 | 899 / 901 |
ovary | 100% | 7661.96 | 180 / 180 | 100% | 281.62 | 429 / 430 |
skin | 100% | 5369.60 | 1808 / 1809 | 100% | 247.85 | 471 / 472 |
thymus | 100% | 12813.12 | 653 / 653 | 100% | 1600.94 | 603 / 605 |
lung | 100% | 14859.59 | 578 / 578 | 99% | 339.99 | 1149 / 1155 |
prostate | 100% | 5161.44 | 245 / 245 | 99% | 149.38 | 495 / 502 |
stomach | 100% | 3859.97 | 359 / 359 | 99% | 116.28 | 282 / 286 |
intestine | 100% | 4869.16 | 966 / 966 | 98% | 119.10 | 518 / 527 |
uterus | 100% | 5817.34 | 170 / 170 | 98% | 165.64 | 451 / 459 |
bladder | 100% | 4751.90 | 21 / 21 | 98% | 165.42 | 492 / 504 |
breast | 100% | 7211.69 | 459 / 459 | 97% | 138.78 | 1079 / 1118 |
pancreas | 97% | 2453.92 | 319 / 328 | 99% | 173.29 | 176 / 178 |
esophagus | 100% | 3928.69 | 1444 / 1445 | 96% | 98.59 | 176 / 183 |
adrenal gland | 100% | 7633.89 | 258 / 258 | 90% | 124.44 | 207 / 230 |
liver | 84% | 1816.84 | 189 / 226 | 80% | 72.32 | 325 / 406 |
brain | 75% | 2032.12 | 1970 / 2642 | 87% | 116.43 | 614 / 705 |
adipose | 100% | 8458.45 | 1204 / 1204 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 195.09 | 29 / 29 |
spleen | 100% | 8296.02 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 134.51 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 66.86 | 1 / 1 |
blood vessel | 100% | 6837.39 | 1332 / 1335 | 0% | 0 | 0 / 0 |
peripheral blood | 99% | 5557.81 | 919 / 929 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 99% | 212.70 | 79 / 80 |
heart | 94% | 3150.48 | 809 / 861 | 0% | 0 | 0 / 0 |
muscle | 42% | 680.38 | 336 / 803 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0015914 | Biological process | phospholipid transport |
GO_0046836 | Biological process | glycolipid transport |
GO_0032366 | Biological process | intracellular sterol transport |
GO_0009615 | Biological process | response to virus |
GO_0008203 | Biological process | cholesterol metabolic process |
GO_0032367 | Biological process | intracellular cholesterol transport |
GO_0010878 | Biological process | cholesterol storage |
GO_0019747 | Biological process | regulation of isoprenoid metabolic process |
GO_0010467 | Biological process | gene expression |
GO_0033344 | Biological process | cholesterol efflux |
GO_0030301 | Biological process | cholesterol transport |
GO_0042632 | Biological process | cholesterol homeostasis |
GO_0035578 | Cellular component | azurophil granule lumen |
GO_0005615 | Cellular component | extracellular space |
GO_0005576 | Cellular component | extracellular region |
GO_0005764 | Cellular component | lysosome |
GO_0070062 | Cellular component | extracellular exosome |
GO_0005783 | Cellular component | endoplasmic reticulum |
GO_0043202 | Cellular component | lysosomal lumen |
GO_0019899 | Molecular function | enzyme binding |
GO_0015485 | Molecular function | cholesterol binding |
GO_0120020 | Molecular function | cholesterol transfer activity |
GO_0005515 | Molecular function | protein binding |
Gene name | NPC2 |
Protein name | NPC intracellular cholesterol transporter 2 NPC intracellular cholesterol transporter 2 (Epididymal secretory protein E1) (Human epididymis-specific protein 1) (He1) (Niemann-Pick disease type C2 protein) NPC intracellular cholesterol transporter 2 (Epididymal secretory protein E1) |
Synonyms | hCG_21712 HE1 |
Description | FUNCTION: Intracellular cholesterol transporter which acts in concert with NPC1 and plays an important role in the egress of cholesterol from the lysosomal compartment . Unesterified cholesterol that has been released from LDLs in the lumen of the late endosomes/lysosomes is transferred by NPC2 to the cholesterol-binding pocket in the N-terminal domain of NPC1 . May bind and mobilize cholesterol that is associated with membranes . NPC2 binds cholesterol with a 1:1 stoichiometry . Can bind a variety of sterols, including lathosterol, desmosterol and the plant sterols stigmasterol and beta-sitosterol . The secreted form of NCP2 regulates biliary cholesterol secretion via stimulation of ABCG5/ABCG8-mediated cholesterol transport (By similarity). . |
Accessions | ENST00000238633.6 E7EMS2 ENST00000554482.1 G3V3D1 H0YIZ1 ENST00000556009.5 P61916 J3KMY5 H0YJE2 A0A024R6C0 ENST00000555619.6 [P61916-1] G3V2V8 G3V3E8 ENST00000553490.5 ENST00000557510.5 ENST00000541064.5 [P61916-2] ENST00000555592.1 ENST00000434013.6 |