Name | Number of supported studies | Average coverage | |
---|---|---|---|
lung | 17 studies | 37% ± 13% | |
peripheral blood | 17 studies | 32% ± 11% | |
intestine | 10 studies | 33% ± 14% | |
kidney | 9 studies | 34% ± 10% | |
brain | 9 studies | 27% ± 10% | |
eye | 8 studies | 26% ± 11% | |
liver | 6 studies | 39% ± 21% | |
bone marrow | 5 studies | 26% ± 7% | |
uterus | 5 studies | 38% ± 18% | |
lymph node | 5 studies | 37% ± 15% | |
pancreas | 4 studies | 44% ± 13% | |
prostate | 4 studies | 25% ± 9% | |
breast | 4 studies | 37% ± 1% | |
placenta | 3 studies | 41% ± 14% | |
adrenal gland | 3 studies | 31% ± 12% | |
thymus | 3 studies | 53% ± 22% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
breast | 100% | 2813.24 | 459 / 459 | 100% | 35.77 | 1118 / 1118 |
esophagus | 100% | 2348.90 | 1445 / 1445 | 100% | 23.70 | 183 / 183 |
liver | 100% | 1796.26 | 226 / 226 | 100% | 29.42 | 406 / 406 |
lung | 100% | 2347.28 | 578 / 578 | 100% | 27.28 | 1155 / 1155 |
ovary | 100% | 2131.45 | 180 / 180 | 100% | 33.71 | 430 / 430 |
stomach | 100% | 1859.05 | 359 / 359 | 100% | 24.39 | 286 / 286 |
uterus | 100% | 2543.62 | 170 / 170 | 100% | 33.51 | 459 / 459 |
brain | 100% | 1919.83 | 2637 / 2642 | 100% | 23.91 | 705 / 705 |
bladder | 100% | 2191.10 | 21 / 21 | 100% | 28.50 | 503 / 504 |
prostate | 100% | 2171.54 | 245 / 245 | 100% | 23.39 | 501 / 502 |
thymus | 100% | 2533.15 | 653 / 653 | 100% | 22.49 | 603 / 605 |
kidney | 100% | 2482.33 | 89 / 89 | 99% | 21.29 | 896 / 901 |
intestine | 100% | 2528.58 | 966 / 966 | 99% | 24.60 | 523 / 527 |
pancreas | 100% | 1089.65 | 327 / 328 | 99% | 21.98 | 177 / 178 |
skin | 100% | 2231.61 | 1809 / 1809 | 99% | 26.16 | 466 / 472 |
adrenal gland | 100% | 2276.01 | 258 / 258 | 99% | 22.36 | 227 / 230 |
adipose | 100% | 2939.28 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 2743.72 | 1335 / 1335 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 30.08 | 29 / 29 |
muscle | 100% | 2664.02 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 2330.70 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 26.91 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 21.02 | 1 / 1 |
heart | 99% | 1691.26 | 850 / 861 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 95% | 23.28 | 76 / 80 |
peripheral blood | 86% | 1385.49 | 796 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0006325 | Biological process | chromatin organization |
GO_0006357 | Biological process | regulation of transcription by RNA polymerase II |
GO_0006282 | Biological process | regulation of DNA repair |
GO_0006368 | Biological process | transcription elongation by RNA polymerase II |
GO_0045893 | Biological process | positive regulation of DNA-templated transcription |
GO_0043484 | Biological process | regulation of RNA splicing |
GO_0015031 | Biological process | protein transport |
GO_0061179 | Biological process | negative regulation of insulin secretion involved in cellular response to glucose stimulus |
GO_0016973 | Biological process | poly(A)+ mRNA export from nucleus |
GO_0005739 | Cellular component | mitochondrion |
GO_0005654 | Cellular component | nucleoplasm |
GO_0070390 | Cellular component | transcription export complex 2 |
GO_0033276 | Cellular component | transcription factor TFTC complex |
GO_0044615 | Cellular component | nuclear pore nuclear basket |
GO_0071819 | Cellular component | DUBm complex |
GO_0000124 | Cellular component | SAGA complex |
GO_0003682 | Molecular function | chromatin binding |
GO_0003713 | Molecular function | transcription coactivator activity |
GO_0030374 | Molecular function | nuclear receptor coactivator activity |
GO_0005515 | Molecular function | protein binding |
Gene name | ENY2 |
Protein name | Transcription and mRNA export factor ENY2 (Enhancer of yellow 2 transcription factor homolog) ENY2 transcription and export complex 2 subunit |
Synonyms | DC6 |
Description | FUNCTION: Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates in a subcomplex that specifically deubiquitinates both histones H2A and H2B. The SAGA complex is recruited to specific gene promoters by activators such as MYC, where it is required for transcription. Required for nuclear receptor-mediated transactivation . As a component of the TREX-2 complex, involved in the export of mRNAs to the cytoplasm through the nuclear pores . . FUNCTION: Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. The transcription regulatory histone acetylation (HAT) complex SAGA is a multiprotein complex that activates transcription by remodeling chromatin and mediating histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex that specifically deubiquitinates both histones H2A and H2B. The SAGA complex is recruited to specific gene promoters by activators such as MYC, where it is required for transcription. Required for nuclear receptor-mediated transactivation. The TREX-2 complex functions in docking export-competent ribonucleoprotein particles (mRNPs) to the nuclear entrance of the nuclear pore complex (nuclear basket). TREX-2 participates in mRNA export and accurate chromatin positioning in the nucleus by tethering genes to the nuclear periphery. . |
Accessions | ENST00000517311.5 E5RI00 Q9NPA8 E5RHT9 E5RHX8 ENST00000521688.6 [Q9NPA8-1] J3KNT2 ENST00000521662.5 [Q9NPA8-2] ENST00000522766.5 ENST00000523335.1 E5RJ84 ENST00000520147.5 ENST00000339942.11 |