CUTA report

Query

Invalid input gene. Please select from the suggestions.

I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
natural killer cell	37 studies	44% ± 13%	Explore
B cell	36 studies	35% ± 10%	Explore
fibroblast	34 studies	43% ± 17%	Explore
CD8-positive, alpha-beta T cell	34 studies	42% ± 14%	Explore
CD4-positive, alpha-beta T cell	31 studies	47% ± 14%	Explore
T cell	30 studies	41% ± 14%	Explore
regulatory T cell	26 studies	51% ± 15%	Explore
macrophage	25 studies	31% ± 12%	Explore
endothelial cell	25 studies	35% ± 14%	Explore
pericyte	25 studies	42% ± 17%	Explore
conventional dendritic cell	24 studies	34% ± 14%	Explore
plasma cell	23 studies	58% ± 20%	Explore
smooth muscle cell	23 studies	42% ± 14%	Explore
epithelial cell	22 studies	49% ± 24%	Explore
mature NK T cell	21 studies	41% ± 14%	Explore
memory B cell	20 studies	40% ± 10%	Explore
basal cell	20 studies	46% ± 20%	Explore
classical monocyte	20 studies	33% ± 11%	Explore
naive B cell	19 studies	27% ± 8%	Explore
connective tissue cell	19 studies	46% ± 21%	Explore
mast cell	18 studies	41% ± 14%	Explore
monocyte	18 studies	29% ± 9%	Explore
naive thymus-derived CD4-positive, alpha-beta T cell	17 studies	43% ± 14%	Explore
non-classical monocyte	17 studies	31% ± 12%	Explore
gamma-delta T cell	17 studies	43% ± 15%	Explore
endothelial cell of lymphatic vessel	16 studies	39% ± 12%	Explore
ciliated cell	16 studies	53% ± 18%	Explore
mucosal invariant T cell	15 studies	40% ± 15%	Explore
CD16-positive, CD56-dim natural killer cell, human	15 studies	45% ± 13%	Explore
CD16-negative, CD56-bright natural killer cell, human	14 studies	47% ± 15%	Explore
naive thymus-derived CD8-positive, alpha-beta T cell	14 studies	48% ± 14%	Explore
plasmacytoid dendritic cell	14 studies	30% ± 11%	Explore
myofibroblast cell	13 studies	49% ± 15%	Explore
plasmablast	12 studies	59% ± 19%	Explore
CD8-positive, alpha-beta memory T cell	12 studies	41% ± 17%	Explore
secretory cell	12 studies	43% ± 19%	Explore
CD4-positive, alpha-beta memory T cell	11 studies	48% ± 18%	Explore
dendritic cell	11 studies	34% ± 19%	Explore
goblet cell	11 studies	37% ± 17%	Explore
myeloid cell	11 studies	30% ± 13%	Explore
innate lymphoid cell	10 studies	44% ± 15%	Explore
mesothelial cell	10 studies	63% ± 22%	Explore
effector memory CD8-positive, alpha-beta T cell	9 studies	43% ± 16%	Explore
progenitor cell	9 studies	61% ± 15%	Explore
abnormal cell	9 studies	53% ± 19%	Explore
endothelial cell of artery	9 studies	25% ± 10%	Explore
vein endothelial cell	9 studies	26% ± 11%	Explore
T follicular helper cell	9 studies	48% ± 13%	Explore
endothelial cell of vascular tree	9 studies	27% ± 4%	Explore
type I pneumocyte	8 studies	43% ± 16%	Explore
type II pneumocyte	8 studies	46% ± 21%	Explore
leukocyte	8 studies	35% ± 10%	Explore
capillary endothelial cell	8 studies	25% ± 11%	Explore
IgG plasma cell	8 studies	43% ± 14%	Explore
club cell	7 studies	43% ± 10%	Explore
effector CD8-positive, alpha-beta T cell	7 studies	46% ± 17%	Explore
epithelial cell of proximal tubule	7 studies	47% ± 19%	Explore
neuron	7 studies	53% ± 29%	Explore
IgA plasma cell	7 studies	46% ± 14%	Explore
hematopoietic precursor cell	6 studies	49% ± 22%	Explore
ionocyte	6 studies	44% ± 11%	Explore
respiratory goblet cell	6 studies	33% ± 21%	Explore
effector CD4-positive, alpha-beta T cell	6 studies	59% ± 22%	Explore
kidney loop of Henle epithelial cell	6 studies	46% ± 14%	Explore
renal alpha-intercalated cell	6 studies	66% ± 5%	Explore
enterocyte	6 studies	36% ± 14%	Explore
intestinal crypt stem cell	6 studies	47% ± 19%	Explore
hematopoietic stem cell	6 studies	52% ± 12%	Explore
erythrocyte	6 studies	36% ± 19%	Explore
effector memory CD4-positive, alpha-beta T cell	6 studies	52% ± 21%	Explore
CD4-positive helper T cell	5 studies	32% ± 9%	Explore
effector memory CD8-positive, alpha-beta T cell, terminally differentiated	5 studies	35% ± 12%	Explore
exhausted T cell	5 studies	56% ± 12%	Explore
mononuclear phagocyte	5 studies	38% ± 18%	Explore
kidney distal convoluted tubule epithelial cell	5 studies	67% ± 17%	Explore
enteroendocrine cell	5 studies	59% ± 22%	Explore
transit amplifying cell	5 studies	41% ± 17%	Explore
erythroblast	5 studies	46% ± 16%	Explore
brush cell	5 studies	28% ± 14%	Explore
double negative thymocyte	5 studies	55% ± 15%	Explore
granulocyte	5 studies	41% ± 17%	Explore
central memory CD8-positive, alpha-beta T cell	4 studies	38% ± 16%	Explore
deuterosomal cell	4 studies	33% ± 8%	Explore
platelet	4 studies	21% ± 3%	Explore
pancreatic A cell	4 studies	82% ± 6%	Explore
type B pancreatic cell	4 studies	82% ± 6%	Explore
retinal ganglion cell	4 studies	70% ± 25%	Explore
precursor B cell	4 studies	35% ± 11%	Explore
pro-B cell	4 studies	31% ± 4%	Explore
immature B cell	4 studies	43% ± 16%	Explore
amacrine cell	4 studies	44% ± 21%	Explore
astrocyte	4 studies	39% ± 20%	Explore
retina horizontal cell	4 studies	39% ± 20%	Explore
adventitial cell	4 studies	29% ± 8%	Explore
alveolar macrophage	4 studies	32% ± 6%	Explore
mucus secreting cell	4 studies	42% ± 20%	Explore
intermediate monocyte	4 studies	42% ± 20%	Explore
luminal hormone-sensing cell of mammary gland	4 studies	64% ± 15%	Explore
group 3 innate lymphoid cell	4 studies	61% ± 13%	Explore
T-helper 17 cell	4 studies	51% ± 17%	Explore
CD4-positive, alpha-beta cytotoxic T cell	3 studies	50% ± 25%	Explore
duct epithelial cell	3 studies	44% ± 1%	Explore
precursor cell	3 studies	58% ± 18%	Explore
pancreatic D cell	3 studies	80% ± 9%	Explore
podocyte	3 studies	62% ± 16%	Explore
oligodendrocyte	3 studies	27% ± 11%	Explore
neural crest cell	3 studies	65% ± 9%	Explore
retinal bipolar neuron	3 studies	46% ± 20%	Explore
OFF-bipolar cell	3 studies	40% ± 24%	Explore
ON-bipolar cell	3 studies	41% ± 23%	Explore
renal principal cell	3 studies	60% ± 6%	Explore
extravillous trophoblast	3 studies	31% ± 11%	Explore
common myeloid progenitor	3 studies	46% ± 27%	Explore
lymphocyte	3 studies	43% ± 16%	Explore
megakaryocyte	3 studies	38% ± 9%	Explore
neuroendocrine cell	3 studies	61% ± 30%	Explore
retinal cone cell	3 studies	54% ± 20%	Explore
retinal rod cell	3 studies	36% ± 14%	Explore
serous secreting cell	3 studies	50% ± 15%	Explore
intraepithelial lymphocyte	3 studies	46% ± 12%	Explore
Mueller cell	3 studies	43% ± 9%	Explore
rod bipolar cell	3 studies	39% ± 13%	Explore
muscle cell	3 studies	36% ± 20%	Explore
germinal center B cell	3 studies	38% ± 4%	Explore
myoepithelial cell	3 studies	58% ± 18%	Explore
luminal cell of prostate epithelium	3 studies	42% ± 9%	Explore
IgM plasma cell	3 studies	54% ± 15%	Explore
pancreatic ductal cell	3 studies	54% ± 5%	Explore
granulocyte monocyte progenitor cell	3 studies	45% ± 13%	Explore
megakaryocyte-erythroid progenitor cell	3 studies	62% ± 22%	Explore
glial cell	3 studies	48% ± 25%	Explore
hepatocyte	3 studies	52% ± 29%	Explore
keratinocyte	3 studies	35% ± 3%	Explore
T-helper 1 cell	3 studies	64% ± 10%	Explore
central memory CD4-positive, alpha-beta T cell	3 studies	51% ± 14%	Explore
progenitor cell of mammary luminal epithelium	3 studies	69% ± 12%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
peripheral blood	18 studies	41% ± 12%	Explore
lung	16 studies	44% ± 16%	Explore
intestine	13 studies	38% ± 18%	Explore
kidney	9 studies	43% ± 12%	Explore
eye	8 studies	32% ± 15%	Explore
brain	6 studies	24% ± 7%	Explore
liver	6 studies	37% ± 17%	Explore
pancreas	5 studies	57% ± 26%	Explore
bone marrow	5 studies	30% ± 9%	Explore
lymph node	5 studies	49% ± 12%	Explore
uterus	4 studies	55% ± 15%	Explore
prostate	4 studies	31% ± 9%	Explore
breast	4 studies	46% ± 12%	Explore
placenta	3 studies	42% ± 21%	Explore
adrenal gland	3 studies	39% ± 9%	Explore
esophagus	3 studies	42% ± 31%	Explore
thymus	3 studies	57% ± 24%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
esophagus	100%	3794.52	1445 / 1445	100%	105.00	183 / 183
liver	100%	3531.91	226 / 226	100%	283.86	406 / 406
ovary	100%	6071.35	180 / 180	100%	366.85	430 / 430
pancreas	100%	3220.27	328 / 328	100%	191.20	178 / 178
brain	100%	5200.84	2641 / 2642	100%	241.41	705 / 705
skin	100%	5173.35	1808 / 1809	100%	362.22	472 / 472
thymus	100%	6823.68	653 / 653	100%	327.79	604 / 605
prostate	100%	5123.58	245 / 245	100%	306.69	501 / 502
uterus	100%	5417.42	170 / 170	100%	250.96	458 / 459
adrenal gland	100%	8244.62	258 / 258	100%	328.89	229 / 230
kidney	100%	5664.53	89 / 89	99%	179.61	896 / 901
intestine	100%	4803.72	966 / 966	99%	204.63	524 / 527
stomach	100%	4269.45	359 / 359	99%	175.99	284 / 286
bladder	100%	4150.10	21 / 21	99%	219.48	499 / 504
breast	100%	4402.02	459 / 459	99%	254.56	1105 / 1118
lung	100%	3996.83	576 / 578	99%	163.95	1140 / 1155
adipose	100%	3817.70	1204 / 1204	0%	0	0 / 0
eye	0%	0	0 / 0	100%	433.15	80 / 80
lymph node	0%	0	0 / 0	100%	308.81	29 / 29
spleen	100%	4901.22	241 / 241	0%	0	0 / 0
tonsil	0%	0	0 / 0	100%	152.23	45 / 45
ureter	0%	0	0 / 0	100%	259.38	1 / 1
blood vessel	100%	4811.96	1333 / 1335	0%	0	0 / 0
muscle	99%	2728.46	795 / 803	0%	0	0 / 0
heart	98%	3034.20	841 / 861	0%	0	0 / 0
peripheral blood	96%	3641.77	890 / 929	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0