TPM4 report

Query

Invalid input gene. Please select from the suggestions.

I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
endothelial cell	49 studies	50% ± 21%	Explore
fibroblast	43 studies	52% ± 18%	Explore
pericyte	36 studies	60% ± 24%	Explore
macrophage	35 studies	45% ± 14%	Explore
natural killer cell	35 studies	31% ± 12%	Explore
B cell	34 studies	28% ± 9%	Explore
smooth muscle cell	31 studies	61% ± 19%	Explore
T cell	29 studies	32% ± 14%	Explore
conventional dendritic cell	29 studies	50% ± 16%	Explore
endothelial cell of lymphatic vessel	27 studies	65% ± 24%	Explore
classical monocyte	27 studies	45% ± 14%	Explore
CD4-positive, alpha-beta T cell	27 studies	30% ± 19%	Explore
dendritic cell	24 studies	43% ± 21%	Explore
CD8-positive, alpha-beta T cell	24 studies	32% ± 20%	Explore
basal cell	22 studies	51% ± 22%	Explore
epithelial cell	22 studies	45% ± 23%	Explore
regulatory T cell	22 studies	35% ± 14%	Explore
monocyte	21 studies	43% ± 19%	Explore
mast cell	20 studies	41% ± 19%	Explore
plasmacytoid dendritic cell	20 studies	39% ± 11%	Explore
non-classical monocyte	20 studies	32% ± 11%	Explore
connective tissue cell	20 studies	56% ± 21%	Explore
memory B cell	18 studies	26% ± 7%	Explore
plasma cell	17 studies	43% ± 13%	Explore
naive B cell	17 studies	21% ± 7%	Explore
mature NK T cell	16 studies	26% ± 7%	Explore
CD16-positive, CD56-dim natural killer cell, human	15 studies	32% ± 8%	Explore
CD16-negative, CD56-bright natural killer cell, human	15 studies	28% ± 7%	Explore
capillary endothelial cell	15 studies	47% ± 19%	Explore
myofibroblast cell	15 studies	66% ± 22%	Explore
vein endothelial cell	15 studies	59% ± 23%	Explore
myeloid cell	15 studies	47% ± 19%	Explore
gamma-delta T cell	15 studies	27% ± 15%	Explore
endothelial cell of artery	14 studies	56% ± 18%	Explore
endothelial cell of vascular tree	14 studies	56% ± 19%	Explore
mucosal invariant T cell	12 studies	24% ± 5%	Explore
type I pneumocyte	11 studies	49% ± 20%	Explore
plasmablast	11 studies	42% ± 21%	Explore
platelet	11 studies	67% ± 17%	Explore
CD8-positive, alpha-beta memory T cell	11 studies	31% ± 14%	Explore
secretory cell	11 studies	59% ± 22%	Explore
CD4-positive, alpha-beta memory T cell	10 studies	34% ± 23%	Explore
neutrophil	10 studies	38% ± 14%	Explore
goblet cell	10 studies	33% ± 14%	Explore
club cell	9 studies	32% ± 19%	Explore
abnormal cell	9 studies	36% ± 14%	Explore
mesothelial cell	9 studies	49% ± 23%	Explore
alveolar macrophage	8 studies	36% ± 10%	Explore
type II pneumocyte	8 studies	30% ± 17%	Explore
effector CD8-positive, alpha-beta T cell	8 studies	44% ± 26%	Explore
leukocyte	8 studies	38% ± 13%	Explore
effector memory CD8-positive, alpha-beta T cell	8 studies	24% ± 5%	Explore
hematopoietic stem cell	8 studies	55% ± 21%	Explore
innate lymphoid cell	8 studies	29% ± 6%	Explore
respiratory goblet cell	7 studies	41% ± 14%	Explore
progenitor cell	7 studies	31% ± 23%	Explore
precursor B cell	7 studies	40% ± 20%	Explore
ciliated cell	7 studies	41% ± 16%	Explore
oligodendrocyte	7 studies	28% ± 8%	Explore
hematopoietic precursor cell	6 studies	54% ± 23%	Explore
mononuclear phagocyte	6 studies	44% ± 7%	Explore
glutamatergic neuron	6 studies	34% ± 13%	Explore
megakaryocyte	6 studies	76% ± 20%	Explore
lymphocyte	6 studies	45% ± 22%	Explore
neuron	6 studies	38% ± 16%	Explore
IgA plasma cell	6 studies	28% ± 8%	Explore
IgG plasma cell	5 studies	28% ± 9%	Explore
transit amplifying cell	5 studies	23% ± 6%	Explore
pro-B cell	5 studies	47% ± 21%	Explore
immature B cell	5 studies	33% ± 16%	Explore
adventitial cell	5 studies	47% ± 16%	Explore
mucus secreting cell	5 studies	22% ± 3%	Explore
T follicular helper cell	5 studies	24% ± 2%	Explore
effector CD4-positive, alpha-beta T cell	5 studies	51% ± 20%	Explore
effector memory CD4-positive, alpha-beta T cell	5 studies	42% ± 25%	Explore
myoepithelial cell	5 studies	62% ± 19%	Explore
duct epithelial cell	4 studies	36% ± 3%	Explore
squamous epithelial cell	4 studies	66% ± 16%	Explore
pancreatic A cell	4 studies	46% ± 16%	Explore
naive thymus-derived CD4-positive, alpha-beta T cell	4 studies	23% ± 5%	Explore
naive thymus-derived CD8-positive, alpha-beta T cell	4 studies	28% ± 13%	Explore
microglial cell	4 studies	23% ± 6%	Explore
brush cell	4 studies	30% ± 17%	Explore
muscle cell	4 studies	64% ± 28%	Explore
intermediate monocyte	4 studies	50% ± 15%	Explore
luminal hormone-sensing cell of mammary gland	4 studies	46% ± 6%	Explore
keratinocyte	4 studies	33% ± 10%	Explore
T-helper 17 cell	4 studies	47% ± 28%	Explore
astrocyte	4 studies	22% ± 6%	Explore
oligodendrocyte precursor cell	4 studies	27% ± 5%	Explore
precursor cell	3 studies	62% ± 6%	Explore
monocyte-derived dendritic cell	3 studies	49% ± 16%	Explore
exhausted T cell	3 studies	49% ± 25%	Explore
glomerular endothelial cell	3 studies	29% ± 4%	Explore
neural crest cell	3 studies	45% ± 3%	Explore
extravillous trophoblast	3 studies	81% ± 9%	Explore
placental villous trophoblast	3 studies	67% ± 7%	Explore
common myeloid progenitor	3 studies	41% ± 20%	Explore
Schwann cell	3 studies	41% ± 22%	Explore
tissue-resident macrophage	3 studies	47% ± 15%	Explore
inflammatory macrophage	3 studies	35% ± 18%	Explore
germinal center B cell	3 studies	43% ± 16%	Explore
CD4-positive helper T cell	3 studies	35% ± 9%	Explore
endothelial cell of sinusoid	3 studies	37% ± 15%	Explore
granulocyte	3 studies	53% ± 22%	Explore
luminal cell of prostate epithelium	3 studies	48% ± 6%	Explore
GABAergic neuron	3 studies	33% ± 4%	Explore
pancreatic ductal cell	3 studies	75% ± 20%	Explore
megakaryocyte-erythroid progenitor cell	3 studies	73% ± 15%	Explore
enteroendocrine cell	3 studies	39% ± 14%	Explore
glial cell	3 studies	38% ± 20%	Explore
group 3 innate lymphoid cell	3 studies	46% ± 16%	Explore
T-helper 1 cell	3 studies	47% ± 29%	Explore
effector memory CD8-positive, alpha-beta T cell, terminally differentiated	3 studies	25% ± 5%	Explore
double negative thymocyte	3 studies	32% ± 13%	Explore
interneuron	3 studies	30% ± 5%	Explore
CD4-positive, alpha-beta cytotoxic T cell	3 studies	51% ± 26%	Explore
progenitor cell of mammary luminal epithelium	3 studies	59% ± 16%	Explore
renal principal cell	3 studies	51% ± 25%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
lung	19 studies	42% ± 16%	Explore
peripheral blood	16 studies	29% ± 12%	Explore
intestine	9 studies	39% ± 17%	Explore
kidney	8 studies	28% ± 12%	Explore
brain	7 studies	35% ± 6%	Explore
placenta	5 studies	50% ± 27%	Explore
uterus	5 studies	62% ± 16%	Explore
lymph node	5 studies	27% ± 6%	Explore
breast	5 studies	45% ± 16%	Explore
pancreas	4 studies	41% ± 18%	Explore
bone marrow	4 studies	43% ± 22%	Explore
heart	4 studies	26% ± 10%	Explore
esophagus	4 studies	41% ± 21%	Explore
prostate	4 studies	60% ± 24%	Explore
eye	3 studies	28% ± 8%	Explore
adrenal gland	3 studies	20% ± 6%	Explore
skin	3 studies	38% ± 7%	Explore
liver	3 studies	25% ± 3%	Explore
adipose	3 studies	35% ± 15%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
esophagus	100%	28603.18	1445 / 1445	100%	177.16	183 / 183
ovary	100%	33956.73	180 / 180	100%	293.42	430 / 430
breast	100%	33992.82	459 / 459	100%	199.77	1116 / 1118
intestine	100%	23953.87	965 / 966	100%	151.89	526 / 527
lung	100%	44967.29	577 / 578	100%	143.90	1152 / 1155
uterus	100%	47152.93	170 / 170	100%	198.93	457 / 459
skin	100%	51742.73	1808 / 1809	99%	109.34	467 / 472
bladder	100%	32581.14	21 / 21	99%	140.64	498 / 504
prostate	100%	26007.81	244 / 245	98%	91.61	492 / 502
stomach	91%	17551.64	328 / 359	100%	153.42	286 / 286
thymus	99%	15694.25	644 / 653	90%	44.85	545 / 605
adrenal gland	97%	12711.82	249 / 258	87%	58.45	201 / 230
kidney	97%	15999.30	86 / 89	80%	67.26	725 / 901
brain	75%	8999.79	1990 / 2642	87%	58.79	612 / 705
pancreas	38%	3561.87	126 / 328	97%	188.92	173 / 178
adipose	100%	38718.62	1204 / 1204	0%	0	0 / 0
blood vessel	100%	58090.71	1335 / 1335	0%	0	0 / 0
spleen	100%	29338.78	241 / 241	0%	0	0 / 0
tonsil	0%	0	0 / 0	100%	155.75	45 / 45
ureter	0%	0	0 / 0	100%	96.97	1 / 1
lymph node	0%	0	0 / 0	97%	95.39	28 / 29
peripheral blood	93%	17613.18	864 / 929	0%	0	0 / 0
heart	82%	12063.13	705 / 861	0%	0	0 / 0
liver	15%	1406.57	33 / 226	48%	36.72	194 / 406
eye	0%	0	0 / 0	46%	18.10	37 / 80
muscle	14%	1137.14	110 / 803	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0