Name | Number of supported studies | Average coverage | |
---|---|---|---|
brain | 18 studies | 36% ± 17% | |
lung | 14 studies | 33% ± 11% | |
peripheral blood | 11 studies | 22% ± 5% | |
kidney | 8 studies | 21% ± 6% | |
eye | 8 studies | 28% ± 12% | |
intestine | 6 studies | 22% ± 11% | |
heart | 5 studies | 24% ± 5% | |
breast | 5 studies | 19% ± 3% | |
liver | 5 studies | 38% ± 21% | |
prostate | 4 studies | 26% ± 7% | |
adipose | 4 studies | 32% ± 12% | |
pancreas | 3 studies | 55% ± 15% | |
placenta | 3 studies | 30% ± 13% | |
bone marrow | 3 studies | 24% ± 10% | |
uterus | 3 studies | 26% ± 13% | |
esophagus | 3 studies | 47% ± 17% | |
skin | 3 studies | 28% ± 7% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 14917.94 | 1445 / 1445 | 100% | 245.14 | 183 / 183 |
intestine | 100% | 6437.72 | 966 / 966 | 100% | 172.71 | 527 / 527 |
stomach | 100% | 4865.57 | 359 / 359 | 100% | 160.38 | 286 / 286 |
breast | 100% | 5795.29 | 459 / 459 | 100% | 191.10 | 1117 / 1118 |
brain | 100% | 6018.67 | 2639 / 2642 | 100% | 212.64 | 705 / 705 |
bladder | 100% | 6719.19 | 21 / 21 | 100% | 188.43 | 503 / 504 |
prostate | 100% | 5196.93 | 245 / 245 | 100% | 142.40 | 501 / 502 |
ovary | 100% | 4640.73 | 180 / 180 | 100% | 141.79 | 429 / 430 |
lung | 100% | 5661.55 | 576 / 578 | 100% | 199.42 | 1155 / 1155 |
thymus | 100% | 6197.48 | 653 / 653 | 100% | 127.28 | 602 / 605 |
uterus | 100% | 5807.26 | 170 / 170 | 99% | 198.82 | 456 / 459 |
kidney | 100% | 4836.46 | 89 / 89 | 99% | 133.11 | 893 / 901 |
adrenal gland | 100% | 7819.31 | 258 / 258 | 98% | 97.93 | 225 / 230 |
skin | 100% | 9608.54 | 1808 / 1809 | 97% | 123.81 | 460 / 472 |
pancreas | 96% | 2704.68 | 314 / 328 | 99% | 131.67 | 176 / 178 |
liver | 98% | 2720.85 | 221 / 226 | 97% | 85.95 | 393 / 406 |
adipose | 100% | 6104.49 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 6732.53 | 1335 / 1335 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 105.07 | 29 / 29 |
muscle | 100% | 13378.20 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 5131.05 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 209.74 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 59.03 | 1 / 1 |
heart | 93% | 4179.64 | 803 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 91% | 5895.69 | 847 / 929 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 90% | 69.33 | 72 / 80 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0045200 | Biological process | establishment of neuroblast polarity |
GO_0071786 | Biological process | endoplasmic reticulum tubular network organization |
GO_0097051 | Biological process | establishment of protein localization to endoplasmic reticulum membrane |
GO_0072659 | Biological process | protein localization to plasma membrane |
GO_0032869 | Biological process | cellular response to insulin stimulus |
GO_1903361 | Biological process | protein localization to basolateral plasma membrane |
GO_0007409 | Biological process | axonogenesis |
GO_0045055 | Biological process | regulated exocytosis |
GO_0016192 | Biological process | vesicle-mediated transport |
GO_0090150 | Biological process | establishment of protein localization to membrane |
GO_0016197 | Biological process | endosomal transport |
GO_0006887 | Biological process | exocytosis |
GO_0006893 | Biological process | Golgi to plasma membrane transport |
GO_0019882 | Biological process | antigen processing and presentation |
GO_0043001 | Biological process | Golgi to plasma membrane protein transport |
GO_0098609 | Biological process | cell-cell adhesion |
GO_0030859 | Biological process | polarized epithelial cell differentiation |
GO_0009306 | Biological process | protein secretion |
GO_0070382 | Cellular component | exocytic vesicle |
GO_0030667 | Cellular component | secretory granule membrane |
GO_0005856 | Cellular component | cytoskeleton |
GO_0005886 | Cellular component | plasma membrane |
GO_0048471 | Cellular component | perinuclear region of cytoplasm |
GO_0016020 | Cellular component | membrane |
GO_0005789 | Cellular component | endoplasmic reticulum membrane |
GO_0055037 | Cellular component | recycling endosome |
GO_0071782 | Cellular component | endoplasmic reticulum tubular network |
GO_0070062 | Cellular component | extracellular exosome |
GO_0055038 | Cellular component | recycling endosome membrane |
GO_0005794 | Cellular component | Golgi apparatus |
GO_0005925 | Cellular component | focal adhesion |
GO_0005802 | Cellular component | trans-Golgi network |
GO_0099503 | Cellular component | secretory vesicle |
GO_0000139 | Cellular component | Golgi membrane |
GO_0005929 | Cellular component | cilium |
GO_0005829 | Cellular component | cytosol |
GO_0005912 | Cellular component | adherens junction |
GO_0032593 | Cellular component | insulin-responsive compartment |
GO_0000145 | Cellular component | exocyst |
GO_0030670 | Cellular component | phagocytic vesicle membrane |
GO_0010008 | Cellular component | endosome membrane |
GO_0005768 | Cellular component | endosome |
GO_0030659 | Cellular component | cytoplasmic vesicle membrane |
GO_0019003 | Molecular function | GDP binding |
GO_0003925 | Molecular function | G protein activity |
GO_0031489 | Molecular function | myosin V binding |
GO_0005525 | Molecular function | GTP binding |
GO_0098641 | Molecular function | cadherin binding involved in cell-cell adhesion |
GO_0005515 | Molecular function | protein binding |
Gene name | RAB10 |
Protein name | Ras-related protein Rab-10 Ras-related protein Rab-10 (EC 3.6.5.2) GTP-binding protein RAB10 Uncharacterized protein RAB10 |
Synonyms | |
Description | FUNCTION: The small GTPases Rab are key regulators of intracellular membrane trafficking, from the formation of transport vesicles to their fusion with membranes . Rabs cycle between an inactive GDP-bound form and an active GTP-bound form that is able to recruit to membranes different set of downstream effectors directly responsible for vesicle formation, movement, tethering and fusion . That Rab is mainly involved in the biosynthetic transport of proteins from the Golgi to the plasma membrane . Regulates, for instance, SLC2A4/GLUT4 glucose transporter-enriched vesicles delivery to the plasma membrane (By similarity). In parallel, it regulates the transport of TLR4, a toll-like receptor to the plasma membrane and therefore may be important for innate immune response (By similarity). Also plays a specific role in asymmetric protein transport to the plasma membrane . In neurons, it is involved in axonogenesis through regulation of vesicular membrane trafficking toward the axonal plasma membrane (By similarity). In epithelial cells, it regulates transport from the Golgi to the basolateral membrane . May play a role in the basolateral recycling pathway and in phagosome maturation (By similarity). May play a role in endoplasmic reticulum dynamics and morphology controlling tubulation along microtubules and tubules fusion . Together with LRRK2, RAB8A, and RILPL1, it regulates ciliogenesis . When phosphorylated by LRRK2 on Thr-73, binds RILPL1 and inhibits ciliogenesis . Participates in the export of a subset of neosynthesized proteins through a Rab8-Rab10-Rab11-dependent endososomal export route . .; FUNCTION: (Microbial infection) Upon Legionella pneumophila infection promotes endoplasmic reticulum recruitment and bacterial replication. Plays a role in remodeling the Legionella-containing vacuole (LCV) into an endoplasmic reticulum-like vacuole. . |
Accessions | P61026 Q53T70 Q9UL28 Q53SX4 ENST00000264710.5 |