Name | Number of supported studies | Average coverage | |
---|---|---|---|
lung | 15 studies | 38% ± 17% | |
peripheral blood | 15 studies | 30% ± 9% | |
intestine | 10 studies | 33% ± 14% | |
kidney | 9 studies | 33% ± 9% | |
eye | 8 studies | 31% ± 15% | |
brain | 7 studies | 23% ± 6% | |
liver | 7 studies | 30% ± 20% | |
bone marrow | 5 studies | 26% ± 5% | |
lymph node | 5 studies | 34% ± 17% | |
pancreas | 4 studies | 58% ± 18% | |
placenta | 4 studies | 33% ± 18% | |
uterus | 4 studies | 37% ± 17% | |
breast | 4 studies | 28% ± 4% | |
adrenal gland | 3 studies | 28% ± 1% | |
thymus | 3 studies | 48% ± 22% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 2382.27 | 1445 / 1445 | 100% | 116.39 | 183 / 183 |
ovary | 100% | 1438.68 | 180 / 180 | 100% | 126.11 | 430 / 430 |
stomach | 100% | 2304.82 | 359 / 359 | 100% | 138.26 | 286 / 286 |
uterus | 100% | 1823.52 | 170 / 170 | 100% | 132.84 | 459 / 459 |
kidney | 100% | 3087.04 | 89 / 89 | 100% | 104.04 | 900 / 901 |
intestine | 100% | 3022.01 | 966 / 966 | 100% | 148.41 | 526 / 527 |
bladder | 100% | 2215.67 | 21 / 21 | 100% | 131.70 | 503 / 504 |
skin | 100% | 1968.51 | 1806 / 1809 | 100% | 109.88 | 471 / 472 |
liver | 100% | 2400.27 | 225 / 226 | 100% | 101.53 | 406 / 406 |
breast | 100% | 2232.61 | 459 / 459 | 100% | 134.32 | 1113 / 1118 |
thymus | 100% | 1978.70 | 651 / 653 | 100% | 105.19 | 604 / 605 |
brain | 99% | 2843.05 | 2628 / 2642 | 100% | 110.18 | 705 / 705 |
pancreas | 99% | 1263.66 | 326 / 328 | 100% | 89.14 | 178 / 178 |
adrenal gland | 100% | 3319.75 | 258 / 258 | 99% | 132.00 | 228 / 230 |
prostate | 100% | 1844.87 | 244 / 245 | 99% | 105.17 | 498 / 502 |
lung | 99% | 1781.85 | 571 / 578 | 100% | 111.29 | 1155 / 1155 |
adipose | 100% | 2206.72 | 1204 / 1204 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 100% | 83.33 | 80 / 80 |
lymph node | 0% | 0 | 0 / 0 | 100% | 169.29 | 29 / 29 |
muscle | 100% | 5831.98 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 1969.78 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 109.43 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 83.69 | 1 / 1 |
blood vessel | 100% | 2196.23 | 1330 / 1335 | 0% | 0 | 0 / 0 |
heart | 99% | 9630.15 | 850 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 49% | 1205.70 | 451 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0006120 | Biological process | mitochondrial electron transport, NADH to ubiquinone |
GO_0042776 | Biological process | proton motive force-driven mitochondrial ATP synthesis |
GO_0006633 | Biological process | fatty acid biosynthetic process |
GO_0016226 | Biological process | iron-sulfur cluster assembly |
GO_0009249 | Biological process | protein lipoylation |
GO_0044571 | Biological process | [2Fe-2S] cluster assembly |
GO_0032981 | Biological process | mitochondrial respiratory chain complex I assembly |
GO_0009060 | Biological process | aerobic respiration |
GO_0005739 | Cellular component | mitochondrion |
GO_0031966 | Cellular component | mitochondrial membrane |
GO_0005654 | Cellular component | nucleoplasm |
GO_0005743 | Cellular component | mitochondrial inner membrane |
GO_1990229 | Cellular component | iron-sulfur cluster assembly complex |
GO_0005759 | Cellular component | mitochondrial matrix |
GO_0045271 | Cellular component | respiratory chain complex I |
GO_0140978 | Molecular function | mitochondrial large ribosomal subunit binding |
GO_0000036 | Molecular function | acyl carrier activity |
GO_0000035 | Molecular function | acyl binding |
GO_0005504 | Molecular function | fatty acid binding |
GO_0005509 | Molecular function | calcium ion binding |
GO_0005515 | Molecular function | protein binding |
Gene name | NDUFAB1 |
Protein name | NADH:ubiquinone oxidoreductase subunit AB1 Acyl carrier protein Acyl carrier protein, mitochondrial (ACP) (CI-SDAP) (NADH-ubiquinone oxidoreductase 9.6 kDa subunit) |
Synonyms | |
Description | FUNCTION: Carrier of the growing fatty acid chain in fatty acid biosynthesis (By similarity) . Accessory and non-catalytic subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), which functions in the transfer of electrons from NADH to the respiratory chain . Accessory protein, of the core iron-sulfur cluster (ISC) assembly complex, that regulates, in association with LYRM4, the stability and the cysteine desulfurase activity of NFS1 and participates in the [2Fe-2S] clusters assembly on the scaffolding protein ISCU . The core iron-sulfur cluster (ISC) assembly complex is involved in the de novo synthesis of a [2Fe-2S] cluster, the first step of the mitochondrial iron-sulfur protein biogenesis. This process is initiated by the cysteine desulfurase complex (NFS1:LYRM4:NDUFAB1) that produces persulfide which is delivered on the scaffold protein ISCU in a FXN-dependent manner. Then this complex is stabilized by FDX2 which provides reducing equivalents to accomplish the [2Fe-2S] cluster assembly. Finally, the [2Fe-2S] cluster is transferred from ISCU to chaperone proteins, including HSCB, HSPA9 and GLRX5 (By similarity). . FUNCTION: Carrier of the growing fatty acid chain in fatty acid biosynthesis. . FUNCTION: Carrier of the growing fatty acid chain in fatty acid biosynthesis. . |
Accessions | H3BNE8 ENST00000562133.5 ENST00000484769.1 ENST00000567761.1 O14561 ENST00000007516.8 ENST00000570319.5 H3BNK3 I3L505 |