Name | Number of supported studies | Average coverage | |
---|---|---|---|
lung | 17 studies | 34% ± 10% | |
peripheral blood | 17 studies | 37% ± 9% | |
intestine | 11 studies | 26% ± 11% | |
kidney | 9 studies | 36% ± 13% | |
brain | 7 studies | 33% ± 12% | |
eye | 6 studies | 27% ± 9% | |
lymph node | 5 studies | 39% ± 15% | |
pancreas | 4 studies | 55% ± 21% | |
uterus | 4 studies | 38% ± 5% | |
breast | 4 studies | 28% ± 5% | |
liver | 4 studies | 34% ± 17% | |
placenta | 3 studies | 36% ± 19% | |
bone marrow | 3 studies | 27% ± 6% | |
adrenal gland | 3 studies | 26% ± 7% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
adrenal gland | 100% | 16055.35 | 258 / 258 | 100% | 193.46 | 230 / 230 |
esophagus | 100% | 6470.60 | 1445 / 1445 | 100% | 41.68 | 183 / 183 |
kidney | 100% | 12610.63 | 89 / 89 | 100% | 103.71 | 901 / 901 |
ovary | 100% | 7347.67 | 180 / 180 | 100% | 54.04 | 430 / 430 |
uterus | 100% | 7476.80 | 170 / 170 | 100% | 54.73 | 459 / 459 |
thymus | 100% | 8467.62 | 653 / 653 | 100% | 167.92 | 604 / 605 |
lung | 100% | 6495.93 | 577 / 578 | 100% | 52.84 | 1155 / 1155 |
intestine | 100% | 8172.19 | 966 / 966 | 100% | 50.77 | 526 / 527 |
bladder | 100% | 7934.57 | 21 / 21 | 100% | 52.69 | 503 / 504 |
prostate | 100% | 7208.23 | 245 / 245 | 100% | 62.79 | 501 / 502 |
brain | 100% | 8132.30 | 2634 / 2642 | 100% | 72.55 | 705 / 705 |
stomach | 100% | 5956.40 | 359 / 359 | 100% | 48.82 | 285 / 286 |
skin | 100% | 4832.73 | 1806 / 1809 | 100% | 54.56 | 471 / 472 |
liver | 100% | 2835.49 | 225 / 226 | 100% | 45.15 | 406 / 406 |
breast | 100% | 7639.75 | 459 / 459 | 99% | 56.38 | 1110 / 1118 |
pancreas | 95% | 2572.64 | 313 / 328 | 100% | 55.98 | 178 / 178 |
adipose | 100% | 7688.59 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 10835.23 | 1335 / 1335 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 100% | 64.33 | 80 / 80 |
lymph node | 0% | 0 | 0 / 0 | 100% | 88.23 | 29 / 29 |
spleen | 100% | 7608.17 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 55.34 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 33.91 | 1 / 1 |
muscle | 100% | 10530.65 | 802 / 803 | 0% | 0 | 0 / 0 |
heart | 99% | 12019.09 | 849 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 98% | 4580.54 | 910 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_1904439 | Biological process | negative regulation of iron ion import across plasma membrane |
GO_0044572 | Biological process | [4Fe-4S] cluster assembly |
GO_0016226 | Biological process | iron-sulfur cluster assembly |
GO_0006879 | Biological process | intracellular iron ion homeostasis |
GO_0044571 | Biological process | [2Fe-2S] cluster assembly |
GO_1902958 | Biological process | positive regulation of mitochondrial electron transport, NADH to ubiquinone |
GO_1904234 | Biological process | positive regulation of aconitate hydratase activity |
GO_0099128 | Cellular component | mitochondrial [2Fe-2S] assembly complex |
GO_0005739 | Cellular component | mitochondrion |
GO_1990229 | Cellular component | iron-sulfur cluster assembly complex |
GO_0005829 | Cellular component | cytosol |
GO_0005759 | Cellular component | mitochondrial matrix |
GO_0005737 | Cellular component | cytoplasm |
GO_0005634 | Cellular component | nucleus |
GO_0042803 | Molecular function | protein homodimerization activity |
GO_0060090 | Molecular function | molecular adaptor activity |
GO_0008198 | Molecular function | ferrous iron binding |
GO_0005506 | Molecular function | iron ion binding |
GO_0008270 | Molecular function | zinc ion binding |
GO_0051537 | Molecular function | 2 iron, 2 sulfur cluster binding |
GO_0005515 | Molecular function | protein binding |
Gene name | ISCU |
Protein name | Iron-sulfur cluster assembly enzyme ISCU (NifU-like N-terminal domain-containing protein) (NifU-like protein) Iron-sulfur cluster assembly enzyme (cDNA FLJ32689 fis, clone TESTI2000207, highly similar to NifU-like N-terminal domain-containing protein, mitochondrial) Iron-sulfur cluster assembly enzyme (cDNA FLJ51257, highly similar to NifU-like N-terminal domain-containing protein, mitochondrial) Iron-sulfur cluster assembly enzyme ICSU (ISCU) |
Synonyms | NIFUN |
Description | FUNCTION: [Isoform 1]: Mitochondrial scaffold protein, of the core iron-sulfur cluster (ISC) assembly complex, that provides the structural architecture on which the [2Fe-2S] clusters are assembled . The core iron-sulfur cluster (ISC) assembly complex is involved in the de novo synthesis of a [2Fe-2S] cluster, the first step of the mitochondrial iron-sulfur protein biogenesis. This process is initiated by the cysteine desulfurase complex (NFS1:LYRM4:NDUFAB1) that produces persulfide which is delivered on the scaffold protein ISCU in a FXN-dependent manner. Then this complex is stabilized by FDX2 which provides reducing equivalents to accomplish the [2Fe-2S] cluster assembly. Finally, the [2Fe-2S] cluster is transferred from ISCU to chaperone proteins, including HSCB, HSPA9 and GLRX5 (Probable). Exists as two slow interchanging conformational states, a structured (S) and disordered (D) form . May modulate NFS1 desulfurase activity in a zinc-dependent manner . Modulates the interaction between FXN and the cysteine desulfurase complex . .; FUNCTION: [Isoform 2]: Cytoplasmic scaffold protein, of the cytoplasmic core iron-sulfur cluster (ISC) assembly complex that provides the structural architecture on which the Fe-S clusters are assembled and may be involved in the cytoplasmic iron-sulfur protein biogenesis. . FUNCTION: Mitochondrial scaffold protein, of the core iron-sulfur cluster (ISC) assembly complex, that provides the structural architecture on which the [2Fe-2S] clusters are assembled. The core iron-sulfur cluster (ISC) assembly complex is involved in the de novo synthesis of a [2Fe-2S] cluster, the first step of the mitochondrial iron-sulfur protein biogenesis. This process is initiated by the cysteine desulfurase complex (NFS1:LYRM4:NDUFAB1) that produces persulfide which is delivered on the scaffold protein ISCU in a FXN-dependent manner. Then this complex is stabilized by FDX2 which provides reducing equivalents to accomplish the [2Fe-2S] cluster assembly. Finally, the [2Fe-2S] cluster is transferred from ISCU to chaperone proteins, including HSCB, HSPA9 and GLRX5. Exists as two slow interchanging conformational states, a structured (S) and disordered (D) form. May modulate NFS1 desulfurase activity in a zinc-dependent manner. Modulates the interaction between FXN and the cysteine desulfurase complex. . FUNCTION: Mitochondrial scaffold protein, of the core iron-sulfur cluster (ISC) assembly complex, that provides the structural architecture on which the [2Fe-2S] clusters are assembled. The core iron-sulfur cluster (ISC) assembly complex is involved in the de novo synthesis of a [2Fe-2S] cluster, the first step of the mitochondrial iron-sulfur protein biogenesis. This process is initiated by the cysteine desulfurase complex (NFS1:LYRM4:NDUFAB1) that produces persulfide which is delivered on the scaffold protein ISCU in a FXN-dependent manner. Then this complex is stabilized by FDX2 which provides reducing equivalents to accomplish the [2Fe-2S] cluster assembly. Finally, the [2Fe-2S] cluster is transferred from ISCU to chaperone proteins, including HSCB, HSPA9 and GLRX5. Exists as two slow interchanging conformational states, a structured (S) and disordered (D) form. May modulate NFS1 desulfurase activity in a zinc-dependent manner. Modulates the interaction between FXN and the cysteine desulfurase complex. . FUNCTION: Mitochondrial scaffold protein, of the core iron-sulfur cluster (ISC) assembly complex, that provides the structural architecture on which the [2Fe-2S] clusters are assembled. The core iron-sulfur cluster (ISC) assembly complex is involved in the de novo synthesis of a [2Fe-2S] cluster, the first step of the mitochondrial iron-sulfur protein biogenesis. This process is initiated by the cysteine desulfurase complex (NFS1:LYRM4:NDUFAB1) that produces persulfide which is delivered on the scaffold protein ISCU in a FXN-dependent manner. Then this complex is stabilized by FDX2 which provides reducing equivalents to accomplish the [2Fe-2S] cluster assembly. Finally, the [2Fe-2S] cluster is transferred from ISCU to chaperone proteins, including HSCB, HSPA9 and GLRX5. Exists as two slow interchanging conformational states, a structured (S) and disordered (D) form. May modulate NFS1 desulfurase activity in a zinc-dependent manner. Modulates the interaction between FXN and the cysteine desulfurase complex. . |
Accessions | Q9H1K1 B3KQ30 ENST00000535729.5 ENST00000539593.1 B4DNC9 ENST00000311893.14 [Q9H1K1-1] F5H5N2 ENST00000431221.6 F5H672 ENST00000392807.8 [Q9H1K1-2] ENST00000547005.5 ENST00000539580.5 B1P7G3 |