Name | Number of supported studies | Average coverage | |
---|---|---|---|
peripheral blood | 19 studies | 38% ± 13% | |
lung | 17 studies | 40% ± 13% | |
intestine | 12 studies | 35% ± 13% | |
kidney | 8 studies | 39% ± 11% | |
brain | 8 studies | 26% ± 9% | |
eye | 7 studies | 30% ± 13% | |
bone marrow | 5 studies | 29% ± 10% | |
liver | 5 studies | 42% ± 23% | |
lymph node | 5 studies | 39% ± 10% | |
pancreas | 4 studies | 54% ± 22% | |
placenta | 4 studies | 52% ± 24% | |
uterus | 4 studies | 48% ± 19% | |
breast | 4 studies | 33% ± 5% | |
adrenal gland | 3 studies | 35% ± 9% | |
prostate | 3 studies | 28% ± 9% | |
skin | 3 studies | 26% ± 6% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
adrenal gland | 100% | 7885.28 | 258 / 258 | 100% | 114.39 | 230 / 230 |
esophagus | 100% | 5750.83 | 1445 / 1445 | 100% | 101.23 | 183 / 183 |
ovary | 100% | 4036.58 | 180 / 180 | 100% | 175.09 | 430 / 430 |
pancreas | 100% | 4294.37 | 328 / 328 | 100% | 83.46 | 178 / 178 |
thymus | 100% | 7059.57 | 653 / 653 | 100% | 118.63 | 605 / 605 |
uterus | 100% | 5050.42 | 170 / 170 | 100% | 117.64 | 459 / 459 |
brain | 100% | 5978.22 | 2639 / 2642 | 100% | 119.28 | 705 / 705 |
intestine | 100% | 5439.33 | 966 / 966 | 100% | 123.31 | 525 / 527 |
liver | 100% | 5254.04 | 225 / 226 | 100% | 92.87 | 406 / 406 |
kidney | 100% | 6329.66 | 89 / 89 | 99% | 77.07 | 895 / 901 |
skin | 100% | 6278.44 | 1808 / 1809 | 99% | 111.17 | 469 / 472 |
stomach | 100% | 4965.01 | 359 / 359 | 99% | 113.03 | 284 / 286 |
prostate | 100% | 6954.09 | 245 / 245 | 99% | 140.64 | 498 / 502 |
bladder | 100% | 5142.67 | 21 / 21 | 99% | 113.44 | 498 / 504 |
breast | 100% | 5324.91 | 459 / 459 | 99% | 95.47 | 1103 / 1118 |
lung | 100% | 5881.47 | 577 / 578 | 99% | 88.71 | 1139 / 1155 |
adipose | 100% | 5134.22 | 1204 / 1204 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 100% | 108.87 | 80 / 80 |
lymph node | 0% | 0 | 0 / 0 | 100% | 181.55 | 29 / 29 |
peripheral blood | 100% | 9809.00 | 929 / 929 | 0% | 0 | 0 / 0 |
spleen | 100% | 7807.49 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 104.31 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 101.07 | 1 / 1 |
blood vessel | 100% | 5249.11 | 1332 / 1335 | 0% | 0 | 0 / 0 |
muscle | 99% | 3664.80 | 796 / 803 | 0% | 0 | 0 / 0 |
heart | 98% | 4400.98 | 846 / 861 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0015031 | Biological process | protein transport |
GO_0006888 | Biological process | endoplasmic reticulum to Golgi vesicle-mediated transport |
GO_0006890 | Biological process | retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum |
GO_0099612 | Biological process | protein localization to axon |
GO_0006891 | Biological process | intra-Golgi vesicle-mediated transport |
GO_0000139 | Cellular component | Golgi membrane |
GO_0030126 | Cellular component | COPI vesicle coat |
GO_0005654 | Cellular component | nucleoplasm |
GO_0005829 | Cellular component | cytosol |
GO_0005794 | Cellular component | Golgi apparatus |
GO_0005789 | Cellular component | endoplasmic reticulum membrane |
GO_0030133 | Cellular component | transport vesicle |
GO_0005198 | Molecular function | structural molecule activity |
GO_0005515 | Molecular function | protein binding |
Gene name | COPE |
Protein name | Coatomer subunit epsilon (Epsilon-coat protein) (Epsilon-COP) Coatomer subunit epsilon (Epsilon-coat protein) |
Synonyms | hCG_2001439 |
Description | FUNCTION: The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. The coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. In mammals, the coatomer can only be recruited by membranes associated with ADP-ribosylation factors (ARFs), which are small GTP-binding proteins; the complex also influences the Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors (By similarity). . FUNCTION: The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. The coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. In mammals, the coatomer can only be recruited by membranes associated with ADP-ribosylation factors (ARFs), which are small GTP-binding proteins; the complex also influences the Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. . FUNCTION: The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. The coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins. In mammals, the coatomer can only be recruited by membranes associated with ADP-ribosylation factors (ARFs), which are small GTP-binding proteins; the complex also influences the Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. . |
Accessions | ENST00000262812.9 [O14579-1] M0R061 ENST00000593827.1 ENST00000349893.8 [O14579-3] ENST00000351079.8 [O14579-2] O14579 ENST00000600932.5 M0QXB4 |