Name | Number of supported studies | Average coverage | |
---|---|---|---|
lung | 21 studies | 42% ± 16% | |
brain | 20 studies | 36% ± 17% | |
peripheral blood | 19 studies | 52% ± 13% | |
intestine | 11 studies | 34% ± 14% | |
eye | 10 studies | 36% ± 15% | |
kidney | 8 studies | 42% ± 15% | |
liver | 7 studies | 36% ± 15% | |
heart | 6 studies | 28% ± 6% | |
bone marrow | 5 studies | 39% ± 17% | |
adipose | 5 studies | 35% ± 12% | |
prostate | 5 studies | 28% ± 10% | |
lymph node | 5 studies | 47% ± 15% | |
breast | 5 studies | 34% ± 9% | |
pancreas | 4 studies | 54% ± 21% | |
placenta | 4 studies | 46% ± 22% | |
uterus | 4 studies | 50% ± 11% | |
skin | 4 studies | 26% ± 8% | |
adrenal gland | 3 studies | 43% ± 17% | |
esophagus | 3 studies | 50% ± 22% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 16301.71 | 1445 / 1445 | 100% | 43.01 | 183 / 183 |
intestine | 100% | 16819.69 | 966 / 966 | 100% | 39.99 | 527 / 527 |
kidney | 100% | 9050.81 | 89 / 89 | 100% | 31.82 | 901 / 901 |
ovary | 100% | 12179.21 | 180 / 180 | 100% | 43.75 | 430 / 430 |
prostate | 100% | 14228.50 | 245 / 245 | 100% | 49.83 | 502 / 502 |
stomach | 100% | 9965.30 | 359 / 359 | 100% | 40.76 | 286 / 286 |
uterus | 100% | 14360.64 | 170 / 170 | 100% | 50.63 | 459 / 459 |
skin | 100% | 13160.68 | 1808 / 1809 | 100% | 48.32 | 472 / 472 |
thymus | 100% | 10325.11 | 652 / 653 | 100% | 45.30 | 604 / 605 |
lung | 100% | 13519.87 | 577 / 578 | 100% | 42.37 | 1153 / 1155 |
bladder | 100% | 14757.86 | 21 / 21 | 100% | 46.39 | 502 / 504 |
breast | 100% | 11923.29 | 459 / 459 | 100% | 49.33 | 1113 / 1118 |
brain | 99% | 8044.39 | 2627 / 2642 | 100% | 45.19 | 705 / 705 |
adrenal gland | 100% | 11546.15 | 258 / 258 | 98% | 25.93 | 226 / 230 |
liver | 96% | 4263.74 | 218 / 226 | 100% | 21.74 | 404 / 406 |
pancreas | 84% | 3125.99 | 277 / 328 | 99% | 50.04 | 177 / 178 |
adipose | 100% | 12534.25 | 1204 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 16627.02 | 1335 / 1335 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 67.47 | 29 / 29 |
muscle | 100% | 12534.15 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 13072.80 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 48.38 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 39.08 | 1 / 1 |
peripheral blood | 100% | 21268.17 | 926 / 929 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 99% | 29.97 | 79 / 80 |
heart | 99% | 9237.01 | 850 / 861 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0051016 | Biological process | barbed-end actin filament capping |
GO_0030032 | Biological process | lamellipodium assembly |
GO_0022604 | Biological process | regulation of cell morphogenesis |
GO_0007010 | Biological process | cytoskeleton organization |
GO_0008154 | Biological process | actin polymerization or depolymerization |
GO_0051490 | Biological process | negative regulation of filopodium assembly |
GO_0000902 | Biological process | cell morphogenesis |
GO_0010591 | Biological process | regulation of lamellipodium assembly |
GO_0005903 | Cellular component | brush border |
GO_0005856 | Cellular component | cytoskeleton |
GO_0098685 | Cellular component | Schaffer collateral - CA1 synapse |
GO_0016020 | Cellular component | membrane |
GO_0070062 | Cellular component | extracellular exosome |
GO_0098686 | Cellular component | hippocampal mossy fiber to CA3 synapse |
GO_0120212 | Cellular component | sperm head-tail coupling apparatus |
GO_0030863 | Cellular component | cortical cytoskeleton |
GO_0015629 | Cellular component | actin cytoskeleton |
GO_0030017 | Cellular component | sarcomere |
GO_0005829 | Cellular component | cytosol |
GO_0014069 | Cellular component | postsynaptic density |
GO_0008290 | Cellular component | F-actin capping protein complex |
GO_0071203 | Cellular component | WASH complex |
GO_0030027 | Cellular component | lamellipodium |
GO_0045296 | Molecular function | cadherin binding |
GO_0051015 | Molecular function | actin filament binding |
GO_0005515 | Molecular function | protein binding |
GO_0003779 | Molecular function | actin binding |
Gene name | CAPZB |
Protein name | F-actin-capping protein subunit beta Capping actin protein of muscle Z-line subunit beta F-actin-capping protein subunit beta (CapZ beta) |
Synonyms | hCG_41078 |
Description | FUNCTION: F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments. Plays a role in the regulation of cell morphology and cytoskeletal organization. Forms, with CAPZB, the barbed end of the fast growing ends of actin filaments in the dynactin complex and stabilizes dynactin structure. The dynactin multiprotein complex activates the molecular motor dynein for ultra-processive transport along microtubules (By similarity). . FUNCTION: F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments. . FUNCTION: F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments. . FUNCTION: F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments. . FUNCTION: F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments. . FUNCTION: F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments. . |
Accessions | B1AK87 ENST00000674278.1 P47756 ENST00000674228.1 A0A6I8PIN8 ENST00000375142.6 [P47756-1] ENST00000433834.5 Q7L4N0 ENST00000264202.8 [P47756-2] A0A6I8PIH4 ENST00000264203.7 B1AK88 B1AK85 ENST00000674449.1 ENST00000674432.1 [P47756-1] ENST00000375144.6 A0A6I8PRV6 |