Name | Number of supported studies | Average coverage | |
---|---|---|---|
peripheral blood | 16 studies | 30% ± 10% | |
lung | 14 studies | 28% ± 11% | |
intestine | 11 studies | 34% ± 19% | |
kidney | 7 studies | 31% ± 4% | |
eye | 7 studies | 29% ± 16% | |
lymph node | 5 studies | 32% ± 12% | |
liver | 5 studies | 25% ± 13% | |
uterus | 4 studies | 34% ± 15% | |
breast | 4 studies | 26% ± 5% | |
pancreas | 3 studies | 31% ± 11% | |
bone marrow | 3 studies | 23% ± 4% | |
brain | 3 studies | 18% ± 2% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 2059.47 | 1445 / 1445 | 100% | 73.79 | 183 / 183 |
liver | 100% | 2888.35 | 226 / 226 | 100% | 158.42 | 406 / 406 |
ovary | 100% | 2503.59 | 180 / 180 | 100% | 217.85 | 430 / 430 |
thymus | 100% | 2948.99 | 653 / 653 | 100% | 167.05 | 604 / 605 |
brain | 100% | 1938.30 | 2637 / 2642 | 100% | 123.96 | 705 / 705 |
adrenal gland | 100% | 2315.43 | 258 / 258 | 100% | 127.66 | 229 / 230 |
pancreas | 100% | 2388.00 | 328 / 328 | 99% | 105.23 | 177 / 178 |
uterus | 100% | 2080.84 | 170 / 170 | 99% | 114.65 | 456 / 459 |
prostate | 100% | 2620.92 | 245 / 245 | 99% | 224.97 | 498 / 502 |
intestine | 100% | 2597.89 | 966 / 966 | 99% | 153.83 | 522 / 527 |
stomach | 100% | 1996.70 | 359 / 359 | 99% | 131.11 | 283 / 286 |
skin | 100% | 2064.68 | 1809 / 1809 | 99% | 127.81 | 467 / 472 |
kidney | 100% | 2808.62 | 89 / 89 | 99% | 121.70 | 890 / 901 |
bladder | 100% | 1985.67 | 21 / 21 | 98% | 143.13 | 494 / 504 |
breast | 100% | 2044.43 | 459 / 459 | 97% | 106.39 | 1088 / 1118 |
lung | 99% | 1640.77 | 575 / 578 | 98% | 86.35 | 1130 / 1155 |
eye | 0% | 0 | 0 / 0 | 100% | 270.30 | 80 / 80 |
lymph node | 0% | 0 | 0 / 0 | 100% | 177.89 | 29 / 29 |
spleen | 100% | 1756.54 | 241 / 241 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 100% | 114.17 | 1 / 1 |
adipose | 100% | 1889.93 | 1203 / 1204 | 0% | 0 | 0 / 0 |
muscle | 100% | 2901.75 | 802 / 803 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 2020.50 | 1330 / 1335 | 0% | 0 | 0 / 0 |
heart | 99% | 3131.33 | 851 / 861 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 98% | 124.07 | 44 / 45 |
peripheral blood | 97% | 1492.65 | 898 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0006974 | Biological process | DNA damage response |
GO_1902445 | Biological process | regulation of mitochondrial membrane permeability involved in programmed necrotic cell death |
GO_0010883 | Biological process | regulation of lipid storage |
GO_0006631 | Biological process | fatty acid metabolic process |
GO_0005759 | Cellular component | mitochondrial matrix |
GO_0005739 | Cellular component | mitochondrion |
GO_0051213 | Molecular function | dioxygenase activity |
GO_0005515 | Molecular function | protein binding |
GO_0046872 | Molecular function | metal ion binding |
Gene name | ALKBH7 |
Protein name | AlkB homolog 7 Alpha-ketoglutarate-dependent dioxygenase alkB homolog 7, mitochondrial (EC 1.14.11.-) (Alkylated DNA repair protein alkB homolog 7) (Spermatogenesis cell proliferation-related protein) (Spermatogenesis-associated protein 11) |
Synonyms | SPATA11 UNQ6002/PRO34564 ABH7 |
Description | FUNCTION: May function as protein hydroxylase; can catalyze auto-hydroxylation at Leu-110 (in vitro), but this activity may be due to the absence of the true substrate . Required to induce programmed necrosis in response to DNA damage caused by cytotoxic alkylating agents. Acts by triggering the collapse of mitochondrial membrane potential and loss of mitochondrial function that leads to energy depletion and cell death . ALKBH7-mediated necrosis is probably required to prevent the accumulation of cells with DNA damage . Does not display DNA demethylase activity . Involved in fatty acid metabolism (By similarity). . |
Accessions | M0QZI0 ENST00000245812.8 ENST00000599849.1 ENST00000596657.1 Q9BT30 M0QZH2 |