TAF1D | OmnibusX

I. Expression across cell types

Name	Number of supported studies	Average coverage
B cell	39 studies	41% ± 13%	Explore
fibroblast	38 studies	30% ± 12%	Explore
endothelial cell	37 studies	31% ± 11%	Explore
CD8-positive, alpha-beta T cell	35 studies	31% ± 11%	Explore
natural killer cell	34 studies	29% ± 10%	Explore
CD4-positive, alpha-beta T cell	33 studies	33% ± 12%	Explore
T cell	31 studies	31% ± 10%	Explore
macrophage	27 studies	26% ± 9%	Explore
smooth muscle cell	26 studies	26% ± 9%	Explore
pericyte	24 studies	27% ± 11%	Explore
regulatory T cell	23 studies	35% ± 8%	Explore
mast cell	20 studies	31% ± 13%	Explore
memory B cell	20 studies	43% ± 8%	Explore
basal cell	20 studies	31% ± 13%	Explore
naive B cell	19 studies	46% ± 10%	Explore
conventional dendritic cell	19 studies	27% ± 14%	Explore
epithelial cell	19 studies	40% ± 20%	Explore
monocyte	18 studies	24% ± 9%	Explore
classical monocyte	17 studies	24% ± 10%	Explore
naive thymus-derived CD4-positive, alpha-beta T cell	17 studies	36% ± 11%	Explore
non-classical monocyte	17 studies	26% ± 11%	Explore
mature NK T cell	17 studies	29% ± 8%	Explore
gamma-delta T cell	16 studies	35% ± 14%	Explore
endothelial cell of lymphatic vessel	15 studies	27% ± 8%	Explore
CD16-negative, CD56-bright natural killer cell, human	15 studies	30% ± 8%	Explore
plasmacytoid dendritic cell	15 studies	29% ± 10%	Explore
plasma cell	14 studies	28% ± 10%	Explore
CD16-positive, CD56-dim natural killer cell, human	14 studies	28% ± 8%	Explore
mucosal invariant T cell	14 studies	31% ± 7%	Explore
naive thymus-derived CD8-positive, alpha-beta T cell	13 studies	37% ± 10%	Explore
myofibroblast cell	13 studies	26% ± 8%	Explore
endothelial cell of vascular tree	13 studies	31% ± 11%	Explore
ciliated cell	13 studies	27% ± 15%	Explore
type I pneumocyte	12 studies	34% ± 12%	Explore
CD4-positive, alpha-beta memory T cell	12 studies	37% ± 11%	Explore
CD8-positive, alpha-beta memory T cell	12 studies	36% ± 9%	Explore
connective tissue cell	12 studies	28% ± 8%	Explore
astrocyte	12 studies	30% ± 12%	Explore
microglial cell	12 studies	29% ± 11%	Explore
dendritic cell	11 studies	32% ± 18%	Explore
type II pneumocyte	11 studies	32% ± 11%	Explore
myeloid cell	11 studies	27% ± 12%	Explore
effector memory CD8-positive, alpha-beta T cell	10 studies	36% ± 11%	Explore
capillary endothelial cell	10 studies	23% ± 9%	Explore
abnormal cell	10 studies	32% ± 12%	Explore
oligodendrocyte	10 studies	30% ± 14%	Explore
mesothelial cell	10 studies	35% ± 10%	Explore
vein endothelial cell	10 studies	29% ± 12%	Explore
oligodendrocyte precursor cell	10 studies	32% ± 16%	Explore
plasmablast	9 studies	34% ± 17%	Explore
leukocyte	9 studies	33% ± 11%	Explore
GABAergic neuron	9 studies	38% ± 14%	Explore
progenitor cell	9 studies	38% ± 14%	Explore
endothelial cell of artery	9 studies	22% ± 7%	Explore
adipocyte	9 studies	39% ± 16%	Explore
secretory cell	9 studies	34% ± 12%	Explore
alveolar macrophage	8 studies	24% ± 5%	Explore
neuron	8 studies	36% ± 14%	Explore
glutamatergic neuron	8 studies	48% ± 14%	Explore
effector CD8-positive, alpha-beta T cell	7 studies	32% ± 8%	Explore
goblet cell	7 studies	32% ± 15%	Explore
amacrine cell	7 studies	28% ± 7%	Explore
hematopoietic stem cell	7 studies	60% ± 8%	Explore
club cell	7 studies	28% ± 6%	Explore
T follicular helper cell	7 studies	33% ± 10%	Explore
effector CD4-positive, alpha-beta T cell	6 studies	36% ± 6%	Explore
interneuron	6 studies	45% ± 20%	Explore
lymphocyte	6 studies	36% ± 16%	Explore
precursor B cell	6 studies	46% ± 11%	Explore
effector memory CD4-positive, alpha-beta T cell	6 studies	39% ± 14%	Explore
innate lymphoid cell	6 studies	31% ± 7%	Explore
hematopoietic precursor cell	5 studies	50% ± 21%	Explore
mononuclear phagocyte	5 studies	30% ± 8%	Explore
epithelial cell of proximal tubule	5 studies	22% ± 4%	Explore
intestinal crypt stem cell	5 studies	27% ± 5%	Explore
transit amplifying cell	5 studies	32% ± 23%	Explore
pro-B cell	5 studies	41% ± 9%	Explore
immature B cell	5 studies	54% ± 8%	Explore
retina horizontal cell	5 studies	27% ± 8%	Explore
cardiac muscle cell	5 studies	24% ± 5%	Explore
granulocyte	5 studies	28% ± 9%	Explore
effector memory CD8-positive, alpha-beta T cell, terminally differentiated	5 studies	24% ± 5%	Explore
exhausted T cell	4 studies	37% ± 13%	Explore
enteroendocrine cell	4 studies	29% ± 7%	Explore
glial cell	4 studies	28% ± 8%	Explore
kidney loop of Henle epithelial cell	4 studies	18% ± 3%	Explore
respiratory goblet cell	4 studies	25% ± 7%	Explore
CD4-positive helper T cell	4 studies	35% ± 15%	Explore
luminal hormone-sensing cell of mammary gland	4 studies	27% ± 4%	Explore
myoepithelial cell	4 studies	31% ± 5%	Explore
hepatocyte	4 studies	47% ± 20%	Explore
luminal cell of prostate epithelium	4 studies	32% ± 8%	Explore
muscle cell	4 studies	31% ± 10%	Explore
megakaryocyte-erythroid progenitor cell	4 studies	52% ± 25%	Explore
erythrocyte	4 studies	29% ± 14%	Explore
keratinocyte	4 studies	28% ± 4%	Explore
T-helper 17 cell	4 studies	33% ± 7%	Explore
double negative thymocyte	4 studies	45% ± 16%	Explore
pancreatic A cell	3 studies	22% ± 2%	Explore
renal alpha-intercalated cell	3 studies	20% ± 2%	Explore
neural crest cell	3 studies	31% ± 6%	Explore
retinal bipolar neuron	3 studies	24% ± 4%	Explore
extravillous trophoblast	3 studies	43% ± 21%	Explore
placental villous trophoblast	3 studies	50% ± 7%	Explore
common myeloid progenitor	3 studies	40% ± 28%	Explore
neuroendocrine cell	3 studies	29% ± 8%	Explore
retinal cone cell	3 studies	23% ± 3%	Explore
Mueller cell	3 studies	19% ± 2%	Explore
acinar cell	3 studies	32% ± 11%	Explore
erythroblast	3 studies	35% ± 11%	Explore
germinal center B cell	3 studies	42% ± 6%	Explore
IgA plasma cell	3 studies	23% ± 7%	Explore
IgG plasma cell	3 studies	18% ± 3%	Explore
granulocyte monocyte progenitor cell	3 studies	28% ± 6%	Explore
brush cell	3 studies	20% ± 5%	Explore
adventitial cell	3 studies	24% ± 3%	Explore
mucus secreting cell	3 studies	28% ± 4%	Explore
group 3 innate lymphoid cell	3 studies	46% ± 11%	Explore
T-helper 1 cell	3 studies	38% ± 4%	Explore
central memory CD4-positive, alpha-beta T cell	3 studies	37% ± 2%	Explore
central memory CD8-positive, alpha-beta T cell	3 studies	33% ± 5%	Explore
progenitor cell of mammary luminal epithelium	3 studies	34% ± 3%	Explore

II. Expression across tissues

Name	Number of supported studies	Average coverage
lung	18 studies	29% ± 9%	Explore
peripheral blood	17 studies	32% ± 11%	Explore
brain	15 studies	35% ± 14%	Explore
intestine	9 studies	27% ± 10%	Explore
kidney	7 studies	24% ± 6%	Explore
eye	5 studies	31% ± 13%	Explore
lymph node	5 studies	35% ± 8%	Explore
breast	5 studies	30% ± 7%	Explore
liver	5 studies	38% ± 10%	Explore
pancreas	4 studies	24% ± 2%	Explore
bone marrow	4 studies	28% ± 9%	Explore
heart	4 studies	25% ± 3%	Explore
uterus	4 studies	35% ± 17%	Explore
prostate	4 studies	32% ± 8%	Explore
adipose	4 studies	41% ± 22%	Explore
placenta	3 studies	37% ± 6%	Explore
esophagus	3 studies	31% ± 18%	Explore
skin	3 studies	22% ± 4%	Explore

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
esophagus	100%	3128.44	1445 / 1445	100%	24.08	183 / 183
pancreas	100%	5702.14	328 / 328	100%	21.49	178 / 178
uterus	100%	4210.19	170 / 170	100%	21.29	459 / 459
lung	100%	4631.91	577 / 578	100%	23.06	1155 / 1155
breast	100%	4422.31	459 / 459	100%	18.42	1115 / 1118
prostate	100%	3692.11	245 / 245	100%	19.45	500 / 502
ovary	100%	5389.62	180 / 180	100%	22.58	428 / 430
bladder	100%	4054.62	21 / 21	99%	23.06	501 / 504
brain	99%	2354.01	2625 / 2642	100%	17.31	705 / 705
thymus	100%	3355.23	653 / 653	99%	16.78	599 / 605
stomach	100%	3185.28	359 / 359	99%	23.29	283 / 286
intestine	100%	3313.82	966 / 966	99%	25.31	520 / 527
kidney	100%	2969.26	89 / 89	98%	17.46	881 / 901
skin	100%	3936.06	1809 / 1809	94%	18.23	444 / 472
liver	100%	1954.42	226 / 226	92%	11.78	373 / 406
adrenal gland	100%	2244.56	258 / 258	91%	10.14	209 / 230
adipose	100%	4480.00	1204 / 1204	0%	0	0 / 0
lymph node	0%	0	0 / 0	100%	27.73	29 / 29
spleen	100%	3727.19	241 / 241	0%	0	0 / 0
tonsil	0%	0	0 / 0	100%	11.39	45 / 45
ureter	0%	0	0 / 0	100%	10.68	1 / 1
blood vessel	100%	3386.97	1334 / 1335	0%	0	0 / 0
muscle	99%	3050.30	798 / 803	0%	0	0 / 0
eye	0%	0	0 / 0	96%	23.22	77 / 80
heart	95%	1815.03	821 / 861	0%	0	0 / 0
peripheral blood	81%	2626.34	749 / 929	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0

IV. Literature review

[source]

Gene name	TAF1D
Protein name	TATA box-binding protein-associated factor RNA polymerase I subunit D (TATA box-binding protein-associated factor 1D) (Transcription initiation factor SL1/TIF-IB subunit D) Alternative protein TAF1D TATA-box binding protein associated factor, RNA polymerase I subunit D TATA box-binding protein-associated factor RNA polymerase I subunit D (RNA polymerase I-specific TBP-associated factor 41 kDa) (TAFI41) (TATA box-binding protein-associated factor 1D) (TBP-associated factor 1D) (Transcription initiation factor SL1/TIF-IB subunit D)
Synonyms	JOSD3
Description	FUNCTION: Component of the transcription factor SL1/TIF-IB complex, which is involved in the assembly of the PIC (preinitiation complex) during RNA polymerase I-dependent transcription. The rate of PIC formation probably is primarily dependent on the rate of association of SL1/TIF-IB with the rDNA promoter. SL1/TIF-IB is involved in stabilization of nucleolar transcription factor 1/UBTF on rDNA. Formation of SL1/TIF-IB excludes the association of TBP with TFIID subunits. . FUNCTION: Component of the transcription factor SL1/TIF-IB complex, which is involved in the assembly of the PIC (preinitiation complex) during RNA polymerase I-dependent transcription. The rate of PIC formation probably is primarily dependent on the rate of association of SL1/TIF-IB with the rDNA promoter. SL1/TIF-IB is involved in stabilization of nucleolar transcription factor 1/UBTF on rDNA. Formation of SL1/TIF-IB excludes the association of TBP with TFIID subunits. .
Accessions	E9PM59 ENST00000533794.5 H0YH71 H0Y3L3 ENST00000448108.7 ENST00000527169.5 ENST00000526015.5 ENST00000527690.1 ENST00000534770.1 L8ECK2 ENST00000323981.6 H0YCH2 E9PKU8 A0A1D5RMT6 Q9H5J8 ENST00000393259.6 ENST00000540232.5 ENST00000532455.1 H0YG36

GO_0006355	Biological process	regulation of DNA-templated transcription
GO_0072686	Cellular component	mitotic spindle
GO_0005730	Cellular component	nucleolus
GO_0005668	Cellular component	RNA polymerase transcription factor SL1 complex
GO_0005654	Cellular component	nucleoplasm
GO_0005829	Cellular component	cytosol
GO_0034451	Cellular component	centriolar satellite
GO_0003677	Molecular function	DNA binding
GO_0042802	Molecular function	identical protein binding
GO_0005515	Molecular function	protein binding

TAF1D report

I. Expression across cell types

II. Expression across tissues

III. Associated gene sets

IV. Literature review