Name | Number of supported studies | Average coverage | |
---|---|---|---|
peripheral blood | 19 studies | 28% ± 8% | |
lung | 17 studies | 29% ± 11% | |
eye | 10 studies | 43% ± 18% | |
kidney | 9 studies | 42% ± 22% | |
brain | 9 studies | 29% ± 11% | |
intestine | 6 studies | 21% ± 6% | |
heart | 5 studies | 29% ± 7% | |
breast | 4 studies | 28% ± 6% | |
liver | 4 studies | 30% ± 10% | |
lymph node | 4 studies | 19% ± 2% | |
placenta | 3 studies | 32% ± 12% | |
uterus | 3 studies | 37% ± 14% | |
adipose | 3 studies | 28% ± 4% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
esophagus | 100% | 11157.86 | 1443 / 1445 | 99% | 32.14 | 182 / 183 |
pancreas | 100% | 10364.69 | 327 / 328 | 98% | 18.32 | 174 / 178 |
thymus | 100% | 22368.32 | 653 / 653 | 97% | 24.56 | 589 / 605 |
kidney | 100% | 19293.85 | 89 / 89 | 96% | 23.45 | 866 / 901 |
breast | 100% | 16390.34 | 459 / 459 | 95% | 16.85 | 1067 / 1118 |
lung | 99% | 11518.27 | 575 / 578 | 94% | 15.67 | 1091 / 1155 |
stomach | 99% | 7168.41 | 355 / 359 | 94% | 16.98 | 270 / 286 |
intestine | 100% | 8811.42 | 962 / 966 | 93% | 13.46 | 489 / 527 |
uterus | 100% | 11620.22 | 170 / 170 | 91% | 18.14 | 417 / 459 |
prostate | 100% | 7390.13 | 244 / 245 | 90% | 10.53 | 451 / 502 |
bladder | 95% | 6759.57 | 20 / 21 | 84% | 10.91 | 424 / 504 |
ovary | 100% | 23031.56 | 180 / 180 | 71% | 6.64 | 306 / 430 |
adrenal gland | 93% | 4704.62 | 241 / 258 | 73% | 6.00 | 168 / 230 |
skin | 77% | 14474.69 | 1392 / 1809 | 88% | 11.41 | 413 / 472 |
liver | 88% | 6013.06 | 200 / 226 | 46% | 4.36 | 188 / 406 |
brain | 32% | 1767.34 | 845 / 2642 | 85% | 9.68 | 597 / 705 |
adipose | 100% | 15226.06 | 1204 / 1204 | 0% | 0 | 0 / 0 |
muscle | 100% | 17362.05 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 9957.02 | 241 / 241 | 0% | 0 | 0 / 0 |
blood vessel | 100% | 12229.87 | 1332 / 1335 | 0% | 0 | 0 / 0 |
heart | 98% | 9211.23 | 848 / 861 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 98% | 22.92 | 44 / 45 |
lymph node | 0% | 0 | 0 / 0 | 86% | 13.83 | 25 / 29 |
eye | 0% | 0 | 0 / 0 | 78% | 11.81 | 62 / 80 |
peripheral blood | 58% | 5193.91 | 541 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0051642 | Biological process | centrosome localization |
GO_0031022 | Biological process | nuclear migration along microfilament |
GO_1902017 | Biological process | regulation of cilium assembly |
GO_0030335 | Biological process | positive regulation of cell migration |
GO_0007097 | Biological process | nuclear migration |
GO_0021817 | Biological process | nucleokinesis involved in cell motility in cerebral cortex radial glia guided migration |
GO_0030018 | Cellular component | Z disc |
GO_0005739 | Cellular component | mitochondrion |
GO_0070062 | Cellular component | extracellular exosome |
GO_0005634 | Cellular component | nucleus |
GO_0005654 | Cellular component | nucleoplasm |
GO_0005640 | Cellular component | nuclear outer membrane |
GO_0005635 | Cellular component | nuclear envelope |
GO_0005925 | Cellular component | focal adhesion |
GO_0045111 | Cellular component | intermediate filament cytoskeleton |
GO_0034993 | Cellular component | meiotic nuclear membrane microtubule tethering complex |
GO_0031527 | Cellular component | filopodium membrane |
GO_0031258 | Cellular component | lamellipodium membrane |
GO_0016529 | Cellular component | sarcoplasmic reticulum |
GO_0031981 | Cellular component | nuclear lumen |
GO_0005737 | Cellular component | cytoplasm |
GO_0033017 | Cellular component | sarcoplasmic reticulum membrane |
GO_0031965 | Cellular component | nuclear membrane |
GO_0005515 | Molecular function | protein binding |
GO_0003779 | Molecular function | actin binding |
GO_0140444 | Molecular function | cytoskeleton-nuclear membrane anchor activity |
Gene name | SYNE2 |
Protein name | Nesprin-2 (KASH domain-containing protein 2) (KASH2) (Nuclear envelope spectrin repeat protein 2) (Nucleus and actin connecting element protein) (Protein NUANCE) (Synaptic nuclear envelope protein 2) (Syne-2) Spectrin repeat containing nuclear envelope protein 2 Nesprin-2 |
Synonyms | NUA KIAA1011 |
Description | FUNCTION: Multi-isomeric modular protein which forms a linking network between organelles and the actin cytoskeleton to maintain the subcellular spatial organization. As a component of the LINC (LInker of Nucleoskeleton and Cytoskeleton) complex involved in the connection between the nuclear lamina and the cytoskeleton. The nucleocytoplasmic interactions established by the LINC complex play an important role in the transmission of mechanical forces across the nuclear envelope and in nuclear movement and positioning . Specifically, SYNE2 and SUN2 assemble in arrays of transmembrane actin-associated nuclear (TAN) lines which are bound to F-actin cables and couple the nucleus to retrograde actin flow during actin-dependent nuclear movement. May be involved in nucleus-centrosome attachment. During interkinetic nuclear migration (INM) at G2 phase and nuclear migration in neural progenitors its LINC complex association with SUN1/2 and probable association with cytoplasmic dynein-dynactin motor complexes functions to pull the nucleus toward the centrosome; SYNE1 and SYNE2 may act redundantly. During INM at G1 phase mediates respective LINC complex association with kinesin to push the nucleus away from the centrosome. Involved in nuclear migration in retinal photoreceptor progenitors. Required for centrosome migration to the apical cell surface during early ciliogenesis. Facilitates the relaxation of mechanical stress imposed by compressive actin fibers at the rupture site through its nteraction with SYN2 . . |
Accessions | G3V3D4 Q8WXH0 ENST00000555002.6 [Q8WXH0-2] G3V2Q0 A0A669KB61 A0A669KB22 ENST00000344113.8 [Q8WXH0-1] ENST00000555002 ENST00000673869.1 G3V4T3 ENST00000458046.6 [Q8WXH0-5] G3V5N1 A0A1W2PS37 ENST00000555612.5 G3V5X4 ENST00000553801.1 ENST00000553455.1 ENST00000673797.1 A0A669KBG2 A0A669KBH2 A0A1W2PRN9 ENST00000553289.5 ENST00000358025.7 [Q8WXH0-2] ENST00000555241.5 ENST00000341472.9 [Q8WXH0-8] A0A0C4DGK3 ENST00000674144.1 ENST00000554584.5 ENST00000557084.1 ENST00000674003.1 |