RPS4Y1 report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
B cell	36 studies	47% ± 20%	Explore
CD8-positive, alpha-beta T cell	33 studies	45% ± 15%	Explore
CD4-positive, alpha-beta T cell	31 studies	44% ± 17%	Explore
natural killer cell	28 studies	43% ± 15%	Explore
fibroblast	27 studies	40% ± 19%	Explore
macrophage	23 studies	35% ± 12%	Explore
regulatory T cell	23 studies	48% ± 16%	Explore
classical monocyte	22 studies	38% ± 12%	Explore
endothelial cell	21 studies	39% ± 16%	Explore
conventional dendritic cell	21 studies	41% ± 18%	Explore
non-classical monocyte	20 studies	42% ± 13%	Explore
T cell	19 studies	46% ± 21%	Explore
pericyte	19 studies	43% ± 18%	Explore
memory B cell	18 studies	54% ± 14%	Explore
smooth muscle cell	17 studies	45% ± 20%	Explore
gamma-delta T cell	17 studies	50% ± 14%	Explore
naive B cell	17 studies	52% ± 17%	Explore
plasmacytoid dendritic cell	17 studies	36% ± 12%	Explore
basal cell	16 studies	55% ± 24%	Explore
epithelial cell	16 studies	45% ± 21%	Explore
mature NK T cell	15 studies	40% ± 17%	Explore
monocyte	14 studies	36% ± 14%	Explore
mucosal invariant T cell	14 studies	51% ± 21%	Explore
naive thymus-derived CD4-positive, alpha-beta T cell	14 studies	53% ± 17%	Explore
CD16-positive, CD56-dim natural killer cell, human	14 studies	46% ± 17%	Explore
naive thymus-derived CD8-positive, alpha-beta T cell	13 studies	55% ± 18%	Explore
mast cell	13 studies	37% ± 19%	Explore
CD16-negative, CD56-bright natural killer cell, human	12 studies	45% ± 18%	Explore
plasma cell	12 studies	34% ± 15%	Explore
connective tissue cell	12 studies	47% ± 19%	Explore
CD8-positive, alpha-beta memory T cell	11 studies	51% ± 16%	Explore
dendritic cell	11 studies	43% ± 14%	Explore
capillary endothelial cell	11 studies	29% ± 12%	Explore
endothelial cell of artery	11 studies	35% ± 15%	Explore
endothelial cell of lymphatic vessel	10 studies	48% ± 22%	Explore
effector memory CD8-positive, alpha-beta T cell	10 studies	40% ± 15%	Explore
mesothelial cell	10 studies	54% ± 23%	Explore
vein endothelial cell	10 studies	41% ± 15%	Explore
CD4-positive, alpha-beta memory T cell	9 studies	57% ± 17%	Explore
secretory cell	9 studies	62% ± 18%	Explore
myofibroblast cell	9 studies	35% ± 21%	Explore
goblet cell	9 studies	33% ± 11%	Explore
myeloid cell	9 studies	39% ± 19%	Explore
ciliated cell	8 studies	47% ± 18%	Explore
plasmablast	8 studies	43% ± 15%	Explore
hematopoietic stem cell	8 studies	68% ± 13%	Explore
type I pneumocyte	7 studies	31% ± 25%	Explore
type II pneumocyte	7 studies	41% ± 21%	Explore
club cell	7 studies	52% ± 18%	Explore
progenitor cell	7 studies	40% ± 10%	Explore
T follicular helper cell	7 studies	49% ± 19%	Explore
precursor B cell	7 studies	46% ± 9%	Explore
alveolar macrophage	6 studies	43% ± 18%	Explore
hematopoietic precursor cell	6 studies	44% ± 17%	Explore
innate lymphoid cell	6 studies	45% ± 14%	Explore
mononuclear phagocyte	6 studies	39% ± 21%	Explore
intestinal crypt stem cell	6 studies	47% ± 17%	Explore
leukocyte	6 studies	57% ± 10%	Explore
transit amplifying cell	6 studies	36% ± 13%	Explore
endothelial cell of vascular tree	6 studies	65% ± 25%	Explore
respiratory goblet cell	5 studies	28% ± 12%	Explore
neutrophil	5 studies	30% ± 11%	Explore
renal alpha-intercalated cell	5 studies	39% ± 4%	Explore
epithelial cell of proximal tubule	5 studies	37% ± 7%	Explore
enteroendocrine cell	5 studies	34% ± 15%	Explore
abnormal cell	5 studies	37% ± 26%	Explore
pro-B cell	5 studies	52% ± 16%	Explore
T-helper 17 cell	5 studies	52% ± 17%	Explore
immature B cell	5 studies	52% ± 16%	Explore
effector CD8-positive, alpha-beta T cell	5 studies	58% ± 18%	Explore
astrocyte	5 studies	22% ± 5%	Explore
effector memory CD4-positive, alpha-beta T cell	5 studies	57% ± 13%	Explore
CD4-positive helper T cell	4 studies	34% ± 3%	Explore
central memory CD8-positive, alpha-beta T cell	4 studies	58% ± 12%	Explore
effector memory CD8-positive, alpha-beta T cell, terminally differentiated	4 studies	49% ± 13%	Explore
exhausted T cell	4 studies	41% ± 12%	Explore
ionocyte	4 studies	35% ± 20%	Explore
platelet	4 studies	32% ± 11%	Explore
glomerular endothelial cell	4 studies	35% ± 16%	Explore
enterocyte	4 studies	36% ± 13%	Explore
IgG plasma cell	4 studies	25% ± 4%	Explore
microglial cell	4 studies	20% ± 6%	Explore
retinal rod cell	4 studies	24% ± 7%	Explore
kidney loop of Henle epithelial cell	4 studies	28% ± 5%	Explore
erythroblast	4 studies	49% ± 20%	Explore
germinal center B cell	4 studies	48% ± 18%	Explore
neuron	4 studies	39% ± 9%	Explore
effector CD4-positive, alpha-beta T cell	4 studies	70% ± 17%	Explore
granulocyte	4 studies	57% ± 12%	Explore
glutamatergic neuron	4 studies	24% ± 10%	Explore
intermediate monocyte	4 studies	55% ± 13%	Explore
erythrocyte	4 studies	42% ± 9%	Explore
T-helper 1 cell	4 studies	53% ± 7%	Explore
double negative thymocyte	4 studies	64% ± 15%	Explore
deuterosomal cell	3 studies	37% ± 6%	Explore
duct epithelial cell	3 studies	44% ± 0%	Explore
kidney distal convoluted tubule epithelial cell	3 studies	43% ± 4%	Explore
IgA plasma cell	3 studies	24% ± 3%	Explore
OFF-bipolar cell	3 studies	36% ± 18%	Explore
ON-bipolar cell	3 studies	37% ± 19%	Explore
retinal cone cell	3 studies	27% ± 9%	Explore
thymocyte	3 studies	64% ± 5%	Explore
common myeloid progenitor	3 studies	52% ± 16%	Explore
adventitial cell	3 studies	45% ± 16%	Explore
mucus secreting cell	3 studies	46% ± 0%	Explore
serous secreting cell	3 studies	34% ± 10%	Explore
intraepithelial lymphocyte	3 studies	51% ± 10%	Explore
Mueller cell	3 studies	29% ± 1%	Explore
muscle cell	3 studies	42% ± 9%	Explore
luminal cell of prostate epithelium	3 studies	74% ± 9%	Explore
acinar cell	3 studies	53% ± 6%	Explore
pancreatic A cell	3 studies	32% ± 4%	Explore
type B pancreatic cell	3 studies	46% ± 7%	Explore
granulocyte monocyte progenitor cell	3 studies	50% ± 18%	Explore
megakaryocyte-erythroid progenitor cell	3 studies	61% ± 30%	Explore
glial cell	3 studies	32% ± 14%	Explore
group 3 innate lymphoid cell	3 studies	32% ± 9%	Explore
keratinocyte	3 studies	64% ± 23%	Explore
melanocyte	3 studies	55% ± 23%	Explore
central memory CD4-positive, alpha-beta T cell	3 studies	55% ± 10%	Explore
double-positive, alpha-beta thymocyte	3 studies	66% ± 11%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
peripheral blood	17 studies	46% ± 13%	Explore
lung	15 studies	41% ± 21%	Explore
intestine	11 studies	32% ± 12%	Explore
kidney	7 studies	33% ± 8%	Explore
eye	6 studies	30% ± 7%	Explore
bone marrow	5 studies	49% ± 15%	Explore
lymph node	4 studies	42% ± 14%	Explore
prostate	4 studies	63% ± 26%	Explore
brain	4 studies	21% ± 8%	Explore
liver	4 studies	43% ± 19%	Explore
adipose	3 studies	47% ± 19%	Explore
esophagus	3 studies	44% ± 29%	Explore
pancreas	3 studies	41% ± 3%	Explore
placenta	3 studies	63% ± 19%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
prostate	100%	15362.56	245 / 245	99%	664.04	499 / 502
brain	72%	4066.34	1906 / 2642	55%	160.66	388 / 705
bladder	67%	9284.19	14 / 21	56%	204.47	280 / 504
liver	71%	4748.89	161 / 226	51%	134.20	206 / 406
kidney	78%	9629.63	69 / 89	44%	129.63	392 / 901
skin	67%	11060.29	1208 / 1809	49%	219.62	233 / 472
pancreas	63%	7968.86	207 / 328	53%	123.65	94 / 178
lung	68%	7589.82	395 / 578	45%	136.01	518 / 1155
esophagus	66%	7406.73	952 / 1445	38%	78.13	70 / 183
intestine	64%	7885.35	619 / 966	38%	131.50	198 / 527
ureter	0%	0	0 / 0	100%	504.03	1 / 1
adrenal gland	61%	9837.62	157 / 258	36%	85.84	82 / 230
thymus	66%	8499.52	434 / 653	30%	145.81	180 / 605
stomach	64%	7351.92	228 / 359	31%	81.68	88 / 286
adipose	68%	10311.87	816 / 1204	0%	0	0 / 0
muscle	68%	6538.78	543 / 803	0%	0	0 / 0
heart	67%	4819.25	575 / 861	0%	0	0 / 0
tonsil	0%	0	0 / 0	67%	252.43	30 / 45
blood vessel	66%	7343.21	879 / 1335	0%	0	0 / 0
breast	63%	9794.01	291 / 459	1%	4.64	12 / 1118
peripheral blood	64%	5462.37	598 / 929	0%	0	0 / 0
spleen	64%	10376.27	154 / 241	0%	0	0 / 0
lymph node	0%	0	0 / 0	45%	212.94	13 / 29
eye	0%	0	0 / 0	31%	213.64	25 / 80
uterus	0%	0	0 / 170	6%	17.26	28 / 459
ovary	1%	10.88	1 / 180	0%	0	0 / 430
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0