Name | Number of supported studies | Average coverage | |
---|---|---|---|
lung | 18 studies | 31% ± 11% | |
peripheral blood | 15 studies | 30% ± 9% | |
intestine | 10 studies | 25% ± 10% | |
kidney | 8 studies | 24% ± 8% | |
eye | 7 studies | 25% ± 11% | |
brain | 7 studies | 28% ± 8% | |
bone marrow | 6 studies | 28% ± 10% | |
liver | 6 studies | 30% ± 15% | |
pancreas | 4 studies | 49% ± 13% | |
placenta | 4 studies | 59% ± 27% | |
uterus | 4 studies | 37% ± 17% | |
breast | 4 studies | 23% ± 4% | |
lymph node | 4 studies | 25% ± 9% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
breast | 100% | 10744.92 | 459 / 459 | 100% | 648.31 | 1118 / 1118 |
esophagus | 100% | 8764.37 | 1445 / 1445 | 100% | 492.88 | 183 / 183 |
lung | 100% | 13617.38 | 578 / 578 | 100% | 572.59 | 1155 / 1155 |
ovary | 100% | 9607.52 | 180 / 180 | 100% | 408.06 | 430 / 430 |
pancreas | 100% | 9072.13 | 328 / 328 | 100% | 395.52 | 178 / 178 |
stomach | 100% | 9538.34 | 359 / 359 | 100% | 620.09 | 286 / 286 |
uterus | 100% | 10371.23 | 170 / 170 | 100% | 570.65 | 458 / 459 |
intestine | 100% | 9326.04 | 966 / 966 | 100% | 615.20 | 525 / 527 |
prostate | 100% | 10222.12 | 245 / 245 | 100% | 610.51 | 500 / 502 |
thymus | 100% | 14198.40 | 653 / 653 | 100% | 488.43 | 602 / 605 |
bladder | 100% | 10248.95 | 21 / 21 | 99% | 577.62 | 501 / 504 |
skin | 100% | 13273.57 | 1809 / 1809 | 99% | 700.39 | 469 / 472 |
liver | 99% | 8455.83 | 224 / 226 | 100% | 403.52 | 405 / 406 |
kidney | 100% | 10560.71 | 89 / 89 | 98% | 351.05 | 885 / 901 |
adrenal gland | 100% | 14221.02 | 258 / 258 | 94% | 324.48 | 217 / 230 |
brain | 95% | 3607.53 | 2503 / 2642 | 100% | 307.45 | 702 / 705 |
adipose | 100% | 10184.08 | 1204 / 1204 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 100% | 305.76 | 29 / 29 |
spleen | 100% | 12483.91 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 455.20 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 211.10 | 1 / 1 |
blood vessel | 100% | 11362.27 | 1334 / 1335 | 0% | 0 | 0 / 0 |
muscle | 100% | 7066.28 | 800 / 803 | 0% | 0 | 0 / 0 |
eye | 0% | 0 | 0 / 0 | 96% | 270.83 | 77 / 80 |
heart | 96% | 7448.30 | 827 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 95% | 7282.64 | 879 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0018279 | Biological process | protein N-linked glycosylation via asparagine |
GO_0006487 | Biological process | protein N-linked glycosylation |
GO_0036211 | Biological process | protein modification process |
GO_0008250 | Cellular component | oligosaccharyltransferase complex |
GO_0016604 | Cellular component | nuclear body |
GO_0005783 | Cellular component | endoplasmic reticulum |
GO_0016020 | Cellular component | membrane |
GO_0005789 | Cellular component | endoplasmic reticulum membrane |
GO_0004579 | Molecular function | dolichyl-diphosphooligosaccharide-protein glycotransferase activity |
GO_0005515 | Molecular function | protein binding |
Gene name | RPN2 |
Protein name | Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 (Ribophorin-2) Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 2 (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 63 kDa subunit) (RIBIIR) (Ribophorin II) (RPN-II) (Ribophorin-2) |
Synonyms | |
Description | FUNCTION: Subunit of the oligosaccharyl transferase (OST) complex that catalyzes the initial transfer of a defined glycan (Glc(3)Man(9)GlcNAc(2) in eukaryotes) from the lipid carrier dolichol-pyrophosphate to an asparagine residue within an Asn-X-Ser/Thr consensus motif in nascent polypeptide chains, the first step in protein N-glycosylation . N-glycosylation occurs cotranslationally and the complex associates with the Sec61 complex at the channel-forming translocon complex that mediates protein translocation across the endoplasmic reticulum (ER). All subunits are required for a maximal enzyme activity. . FUNCTION: Subunit of the oligosaccharyl transferase (OST) complex that catalyzes the initial transfer of a defined glycan (Glc(3)Man(9)GlcNAc(2) in eukaryotes) from the lipid carrier dolichol-pyrophosphate to an asparagine residue within an Asn-X-Ser/Thr consensus motif in nascent polypeptide chains, the first step in protein N-glycosylation. N-glycosylation occurs cotranslationally and the complex associates with the Sec61 complex at the channel-forming translocon complex that mediates protein translocation across the endoplasmic reticulum (ER). All subunits are required for a maximal enzyme activity. . FUNCTION: Subunit of the oligosaccharyl transferase (OST) complex that catalyzes the initial transfer of a defined glycan (Glc(3)Man(9)GlcNAc(2) in eukaryotes) from the lipid carrier dolichol-pyrophosphate to an asparagine residue within an Asn-X-Ser/Thr consensus motif in nascent polypeptide chains, the first step in protein N-glycosylation. N-glycosylation occurs cotranslationally and the complex associates with the Sec61 complex at the channel-forming translocon complex that mediates protein translocation across the endoplasmic reticulum (ER). All subunits are required for a maximal enzyme activity. . FUNCTION: Subunit of the oligosaccharyl transferase (OST) complex that catalyzes the initial transfer of a defined glycan (Glc(3)Man(9)GlcNAc(2) in eukaryotes) from the lipid carrier dolichol-pyrophosphate to an asparagine residue within an Asn-X-Ser/Thr consensus motif in nascent polypeptide chains, the first step in protein N-glycosylation. N-glycosylation occurs cotranslationally and the complex associates with the Sec61 complex at the channel-forming translocon complex that mediates protein translocation across the endoplasmic reticulum (ER). All subunits are required for a maximal enzyme activity. . FUNCTION: Subunit of the oligosaccharyl transferase (OST) complex that catalyzes the initial transfer of a defined glycan (Glc(3)Man(9)GlcNAc(2) in eukaryotes) from the lipid carrier dolichol-pyrophosphate to an asparagine residue within an Asn-X-Ser/Thr consensus motif in nascent polypeptide chains, the first step in protein N-glycosylation. N-glycosylation occurs cotranslationally and the complex associates with the Sec61 complex at the channel-forming translocon complex that mediates protein translocation across the endoplasmic reticulum (ER). All subunits are required for a maximal enzyme activity. . FUNCTION: Subunit of the oligosaccharyl transferase (OST) complex that catalyzes the initial transfer of a defined glycan (Glc(3)Man(9)GlcNAc(2) in eukaryotes) from the lipid carrier dolichol-pyrophosphate to an asparagine residue within an Asn-X-Ser/Thr consensus motif in nascent polypeptide chains, the first step in protein N-glycosylation. N-glycosylation occurs cotranslationally and the complex associates with the Sec61 complex at the channel-forming translocon complex that mediates protein translocation across the endoplasmic reticulum (ER). All subunits are required for a maximal enzyme activity. . |
Accessions | A0A994J5J1 ENST00000237530.11 [P04844-1] P04844 Q5JYR3 ENST00000705448.1 ENST00000373622.9 [P04844-2] Q5JYR4 ENST00000373632.8 ENST00000456400.1 ENST00000709412.1 [P04844-1] ENST00000437329.5 ENST00000709409.1 [P04844-2] Q5JYR7 H0Y5M1 ENST00000456102.5 |