Name | Number of supported studies | Average coverage | |
---|---|---|---|
lung | 14 studies | 30% ± 14% | |
peripheral blood | 12 studies | 27% ± 9% | |
intestine | 9 studies | 36% ± 18% | |
kidney | 7 studies | 30% ± 5% | |
eye | 6 studies | 32% ± 13% | |
liver | 5 studies | 32% ± 24% | |
brain | 5 studies | 24% ± 6% | |
pancreas | 4 studies | 44% ± 17% | |
uterus | 4 studies | 29% ± 13% | |
lymph node | 4 studies | 29% ± 13% | |
skin | 3 studies | 24% ± 3% | |
adrenal gland | 3 studies | 24% ± 4% | |
breast | 3 studies | 23% ± 3% |
Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
liver | 100% | 5661.80 | 226 / 226 | 100% | 289.13 | 406 / 406 |
ovary | 100% | 3612.58 | 180 / 180 | 100% | 467.57 | 430 / 430 |
pancreas | 100% | 3304.16 | 328 / 328 | 100% | 155.16 | 178 / 178 |
skin | 100% | 5887.72 | 1809 / 1809 | 100% | 260.45 | 471 / 472 |
uterus | 100% | 4271.61 | 170 / 170 | 100% | 244.25 | 458 / 459 |
esophagus | 100% | 6628.89 | 1445 / 1445 | 99% | 219.16 | 182 / 183 |
intestine | 100% | 7986.66 | 966 / 966 | 99% | 413.41 | 524 / 527 |
kidney | 100% | 7786.54 | 89 / 89 | 99% | 218.96 | 895 / 901 |
stomach | 100% | 6509.25 | 359 / 359 | 99% | 359.66 | 284 / 286 |
brain | 99% | 4804.35 | 2622 / 2642 | 100% | 212.67 | 705 / 705 |
thymus | 100% | 4391.88 | 650 / 653 | 100% | 157.68 | 603 / 605 |
prostate | 100% | 4318.71 | 245 / 245 | 99% | 222.71 | 498 / 502 |
breast | 100% | 4348.59 | 458 / 459 | 99% | 229.21 | 1107 / 1118 |
bladder | 100% | 5291.95 | 21 / 21 | 98% | 309.83 | 496 / 504 |
adrenal gland | 100% | 9555.25 | 258 / 258 | 98% | 199.99 | 226 / 230 |
lung | 99% | 3652.14 | 572 / 578 | 99% | 239.43 | 1144 / 1155 |
eye | 0% | 0 | 0 / 0 | 100% | 419.24 | 80 / 80 |
lymph node | 0% | 0 | 0 / 0 | 100% | 266.72 | 29 / 29 |
muscle | 100% | 15489.58 | 803 / 803 | 0% | 0 | 0 / 0 |
spleen | 100% | 4667.80 | 241 / 241 | 0% | 0 | 0 / 0 |
tonsil | 0% | 0 | 0 / 0 | 100% | 295.78 | 45 / 45 |
ureter | 0% | 0 | 0 / 0 | 100% | 192.83 | 1 / 1 |
adipose | 100% | 4551.62 | 1203 / 1204 | 0% | 0 | 0 / 0 |
blood vessel | 99% | 3329.17 | 1328 / 1335 | 0% | 0 | 0 / 0 |
heart | 99% | 14835.07 | 856 / 861 | 0% | 0 | 0 / 0 |
peripheral blood | 90% | 3715.56 | 835 / 929 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
GO_0006122 | Biological process | mitochondrial electron transport, ubiquinol to cytochrome c |
GO_0033762 | Biological process | response to glucagon |
GO_0045333 | Biological process | cellular respiration |
GO_1902600 | Biological process | proton transmembrane transport |
GO_0005750 | Cellular component | mitochondrial respiratory chain complex III |
GO_0016020 | Cellular component | membrane |
GO_0005743 | Cellular component | mitochondrial inner membrane |
GO_0005739 | Cellular component | mitochondrion |
GO_0005634 | Cellular component | nucleus |
GO_0008121 | Molecular function | ubiquinol-cytochrome-c reductase activity |
GO_0020037 | Molecular function | heme binding |
GO_0005515 | Molecular function | protein binding |
GO_0046872 | Molecular function | metal ion binding |
Gene name | CYC1 |
Protein name | Cytochrome c1, heme protein, mitochondrial (EC 7.1.1.8) (Complex III subunit 4) (Complex III subunit IV) (Cytochrome b-c1 complex subunit 4) (Ubiquinol-cytochrome-c reductase complex cytochrome c1 subunit) (Cytochrome c-1) |
Synonyms | |
Description | FUNCTION: Component of the ubiquinol-cytochrome c oxidoreductase, a multisubunit transmembrane complex that is part of the mitochondrial electron transport chain which drives oxidative phosphorylation. The respiratory chain contains 3 multisubunit complexes succinate dehydrogenase (complex II, CII), ubiquinol-cytochrome c oxidoreductase (cytochrome b-c1 complex, complex III, CIII) and cytochrome c oxidase (complex IV, CIV), that cooperate to transfer electrons derived from NADH and succinate to molecular oxygen, creating an electrochemical gradient over the inner membrane that drives transmembrane transport and the ATP synthase. The cytochrome b-c1 complex catalyzes electron transfer from ubiquinol to cytochrome c, linking this redox reaction to translocation of protons across the mitochondrial inner membrane, with protons being carried across the membrane as hydrogens on the quinol. In the process called Q cycle, 2 protons are consumed from the matrix, 4 protons are released into the intermembrane space and 2 electrons are passed to cytochrome c. Cytochrome c1 is a catalytic core subunit containing a c-type heme. It transfers electrons from the [2Fe-2S] iron-sulfur cluster of the Rieske protein to cytochrome c. . |
Accessions | P08574 ENST00000318911.5 |