UTRN report

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I. Expression across cell types

Cell ontologyData table

Name	Number of supported studies	Average coverage
endothelial cell	52 studies	51% ± 22%	Explore
natural killer cell	36 studies	40% ± 18%	Explore
B cell	30 studies	32% ± 16%	Explore
pericyte	29 studies	48% ± 23%	Explore
macrophage	27 studies	39% ± 21%	Explore
smooth muscle cell	27 studies	42% ± 22%	Explore
endothelial cell of lymphatic vessel	24 studies	58% ± 22%	Explore
T cell	23 studies	34% ± 18%	Explore
CD8-positive, alpha-beta T cell	23 studies	31% ± 15%	Explore
non-classical monocyte	23 studies	43% ± 13%	Explore
fibroblast	22 studies	43% ± 21%	Explore
mature NK T cell	18 studies	32% ± 15%	Explore
classical monocyte	18 studies	24% ± 10%	Explore
CD4-positive, alpha-beta T cell	18 studies	30% ± 14%	Explore
astrocyte	17 studies	43% ± 20%	Explore
CD16-negative, CD56-bright natural killer cell, human	16 studies	44% ± 16%	Explore
naive B cell	16 studies	31% ± 10%	Explore
regulatory T cell	16 studies	28% ± 12%	Explore
gamma-delta T cell	16 studies	32% ± 10%	Explore
CD16-positive, CD56-dim natural killer cell, human	15 studies	48% ± 13%	Explore
ciliated cell	15 studies	40% ± 17%	Explore
memory B cell	15 studies	22% ± 4%	Explore
monocyte	14 studies	39% ± 23%	Explore
plasmacytoid dendritic cell	14 studies	29% ± 8%	Explore
endothelial cell of artery	14 studies	45% ± 18%	Explore
microglial cell	14 studies	43% ± 18%	Explore
mucosal invariant T cell	14 studies	35% ± 13%	Explore
capillary endothelial cell	13 studies	42% ± 16%	Explore
type I pneumocyte	12 studies	63% ± 23%	Explore
effector memory CD8-positive, alpha-beta T cell	12 studies	36% ± 13%	Explore
vein endothelial cell	12 studies	44% ± 21%	Explore
CD8-positive, alpha-beta memory T cell	11 studies	33% ± 9%	Explore
naive thymus-derived CD8-positive, alpha-beta T cell	11 studies	21% ± 7%	Explore
myeloid cell	11 studies	38% ± 21%	Explore
basal cell	11 studies	42% ± 24%	Explore
dendritic cell	10 studies	40% ± 18%	Explore
CD4-positive, alpha-beta memory T cell	10 studies	25% ± 6%	Explore
naive thymus-derived CD4-positive, alpha-beta T cell	10 studies	28% ± 12%	Explore
epithelial cell	10 studies	44% ± 19%	Explore
endothelial cell of vascular tree	9 studies	47% ± 25%	Explore
adipocyte	9 studies	64% ± 17%	Explore
type II pneumocyte	8 studies	58% ± 16%	Explore
leukocyte	8 studies	48% ± 27%	Explore
GABAergic neuron	8 studies	35% ± 19%	Explore
conventional dendritic cell	8 studies	23% ± 12%	Explore
glutamatergic neuron	8 studies	31% ± 16%	Explore
oligodendrocyte precursor cell	8 studies	27% ± 9%	Explore
mesothelial cell	8 studies	55% ± 21%	Explore
club cell	7 studies	47% ± 24%	Explore
mast cell	7 studies	36% ± 16%	Explore
effector memory CD8-positive, alpha-beta T cell, terminally differentiated	6 studies	34% ± 18%	Explore
mononuclear phagocyte	6 studies	35% ± 14%	Explore
neuron	6 studies	33% ± 29%	Explore
retinal ganglion cell	6 studies	30% ± 15%	Explore
retina horizontal cell	6 studies	45% ± 20%	Explore
T follicular helper cell	6 studies	21% ± 7%	Explore
innate lymphoid cell	6 studies	35% ± 18%	Explore
effector CD8-positive, alpha-beta T cell	5 studies	23% ± 6%	Explore
precursor B cell	5 studies	35% ± 4%	Explore
cardiac muscle cell	5 studies	39% ± 13%	Explore
lymphocyte	5 studies	56% ± 18%	Explore
Mueller cell	5 studies	25% ± 7%	Explore
myofibroblast cell	5 studies	34% ± 11%	Explore
effector memory CD4-positive, alpha-beta T cell	5 studies	30% ± 8%	Explore
connective tissue cell	5 studies	28% ± 5%	Explore
interneuron	5 studies	37% ± 14%	Explore
deuterosomal cell	4 studies	30% ± 14%	Explore
cholangiocyte	4 studies	52% ± 19%	Explore
kidney distal convoluted tubule epithelial cell	4 studies	31% ± 9%	Explore
abnormal cell	4 studies	34% ± 28%	Explore
glial cell	4 studies	24% ± 12%	Explore
pro-B cell	4 studies	34% ± 8%	Explore
plasma cell	4 studies	39% ± 10%	Explore
immature B cell	4 studies	38% ± 8%	Explore
retinal pigment epithelial cell	4 studies	54% ± 23%	Explore
respiratory goblet cell	4 studies	52% ± 24%	Explore
secretory cell	4 studies	33% ± 15%	Explore
hepatocyte	4 studies	54% ± 19%	Explore
muscle cell	4 studies	43% ± 28%	Explore
brush cell	4 studies	34% ± 13%	Explore
alveolar macrophage	4 studies	53% ± 24%	Explore
double negative thymocyte	4 studies	41% ± 10%	Explore
CD4-positive, alpha-beta cytotoxic T cell	3 studies	18% ± 2%	Explore
plasmablast	3 studies	25% ± 6%	Explore
effector CD4-positive, alpha-beta T cell	3 studies	26% ± 3%	Explore
endothelial cell of sinusoid	3 studies	44% ± 14%	Explore
hepatic stellate cell	3 studies	49% ± 17%	Explore
exhausted T cell	3 studies	32% ± 15%	Explore
glomerular endothelial cell	3 studies	31% ± 7%	Explore
progenitor cell	3 studies	24% ± 2%	Explore
endocardial cell	3 studies	38% ± 14%	Explore
CD4-positive helper T cell	3 studies	24% ± 8%	Explore
ependymal cell	3 studies	55% ± 15%	Explore
group 3 innate lymphoid cell	3 studies	31% ± 9%	Explore
goblet cell	3 studies	47% ± 35%	Explore
transit amplifying cell	3 studies	45% ± 36%	Explore
T-helper 17 cell	3 studies	19% ± 2%	Explore
central memory CD4-positive, alpha-beta T cell	3 studies	27% ± 2%	Explore
central memory CD8-positive, alpha-beta T cell	3 studies	24% ± 3%	Explore
kidney loop of Henle epithelial cell	3 studies	32% ± 10%	Explore
renal principal cell	3 studies	33% ± 11%	Explore
mural cell	3 studies	79% ± 6%	Explore
mucus secreting cell	3 studies	42% ± 5%	Explore

II. Expression across tissues

sc-RNAseq dataData table

Name	Number of supported studies	Average coverage
peripheral blood	16 studies	28% ± 8%	Explore
lung	12 studies	37% ± 20%	Explore
brain	12 studies	27% ± 15%	Explore
kidney	6 studies	29% ± 8%	Explore
heart	5 studies	43% ± 14%	Explore
adipose	4 studies	54% ± 20%	Explore
bone marrow	3 studies	27% ± 4%	Explore
uterus	3 studies	31% ± 7%	Explore
lymph node	3 studies	18% ± 2%	Explore
breast	3 studies	27% ± 6%	Explore
liver	3 studies	48% ± 24%	Explore
intestine	3 studies	18% ± 1%	Explore

Bulk RNAseq dataData table

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
prostate	100%	7483.02	244 / 245	100%	68.30	501 / 502
thymus	100%	13518.14	653 / 653	98%	48.02	593 / 605
breast	100%	11995.29	459 / 459	94%	29.21	1053 / 1118
esophagus	100%	5729.73	1440 / 1445	93%	19.14	171 / 183
lung	100%	10609.40	578 / 578	93%	22.48	1074 / 1155
pancreas	99%	4408.36	326 / 328	92%	18.65	164 / 178
skin	100%	7786.60	1808 / 1809	88%	23.81	417 / 472
kidney	97%	4632.12	86 / 89	90%	32.10	813 / 901
stomach	99%	4136.47	355 / 359	85%	19.24	243 / 286
ovary	100%	7723.29	180 / 180	83%	12.69	358 / 430
intestine	99%	4977.73	961 / 966	83%	14.30	439 / 527
adrenal gland	99%	4940.57	255 / 258	77%	11.27	177 / 230
brain	79%	3157.44	2089 / 2642	93%	18.32	658 / 705
uterus	100%	9227.33	170 / 170	70%	11.63	322 / 459
bladder	100%	6975.86	21 / 21	58%	9.47	294 / 504
liver	56%	1283.30	126 / 226	62%	9.24	250 / 406
adipose	100%	13944.46	1204 / 1204	0%	0	0 / 0
blood vessel	100%	12733.22	1335 / 1335	0%	0	0 / 0
spleen	100%	8061.40	241 / 241	0%	0	0 / 0
heart	97%	3862.06	831 / 861	0%	0	0 / 0
muscle	85%	2580.47	686 / 803	0%	0	0 / 0
eye	0%	0	0 / 0	70%	11.85	56 / 80
peripheral blood	70%	2891.12	646 / 929	0%	0	0 / 0
tonsil	0%	0	0 / 0	69%	13.48	31 / 45
lymph node	0%	0	0 / 0	59%	8.83	17 / 29
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0
ureter	0%	0	0 / 0	0%	0	0 / 1