Tissue | GTEx Coverage | GTEx Average TPM | GTEx Number of samples | TCGA Coverage | TCGA Average TPM | TCGA Number of samples |
---|---|---|---|---|---|---|
lung | 100% | 2252.33 | 578 / 578 | 83% | 8.05 | 962 / 1155 |
stomach | 82% | 223.68 | 296 / 359 | 74% | 5.13 | 212 / 286 |
thymus | 76% | 218.76 | 498 / 653 | 72% | 11.73 | 436 / 605 |
breast | 66% | 152.25 | 302 / 459 | 79% | 6.21 | 885 / 1118 |
intestine | 69% | 480.21 | 666 / 966 | 68% | 4.17 | 358 / 527 |
esophagus | 68% | 157.15 | 979 / 1445 | 66% | 3.78 | 120 / 183 |
prostate | 84% | 212.63 | 205 / 245 | 49% | 2.17 | 245 / 502 |
kidney | 49% | 136.74 | 44 / 89 | 79% | 7.14 | 715 / 901 |
skin | 62% | 137.39 | 1119 / 1809 | 64% | 7.57 | 304 / 472 |
uterus | 62% | 108.56 | 105 / 170 | 59% | 3.56 | 269 / 459 |
bladder | 67% | 230.71 | 14 / 21 | 50% | 3.05 | 252 / 504 |
pancreas | 29% | 54.23 | 96 / 328 | 78% | 6.21 | 138 / 178 |
liver | 73% | 142.46 | 166 / 226 | 27% | 1.35 | 110 / 406 |
peripheral blood | 100% | 6966.67 | 929 / 929 | 0% | 0 | 0 / 0 |
spleen | 100% | 2584.16 | 241 / 241 | 0% | 0 | 0 / 0 |
lymph node | 0% | 0 | 0 / 0 | 97% | 43.33 | 28 / 29 |
tonsil | 0% | 0 | 0 / 0 | 91% | 11.20 | 41 / 45 |
adipose | 85% | 238.21 | 1027 / 1204 | 0% | 0 | 0 / 0 |
brain | 32% | 73.05 | 850 / 2642 | 45% | 1.89 | 320 / 705 |
ovary | 19% | 28.53 | 34 / 180 | 37% | 1.43 | 160 / 430 |
heart | 55% | 114.95 | 477 / 861 | 0% | 0 | 0 / 0 |
blood vessel | 45% | 111.54 | 595 / 1335 | 0% | 0 | 0 / 0 |
adrenal gland | 33% | 49.29 | 85 / 258 | 9% | 0.25 | 20 / 230 |
eye | 0% | 0 | 0 / 0 | 16% | 1.04 | 13 / 80 |
muscle | 3% | 4.28 | 24 / 803 | 0% | 0 | 0 / 0 |
abdomen | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
bone marrow | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
diaphragm | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
gingiva | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasal cavity | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nasopharynx | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
nose | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
placenta | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
spinal column | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 0 |
ureter | 0% | 0 | 0 / 0 | 0% | 0 | 0 / 1 |
GO_0042102 | Biological process | positive regulation of T cell proliferation |
GO_0097190 | Biological process | apoptotic signaling pathway |
GO_0042098 | Biological process | T cell proliferation |
GO_0007165 | Biological process | signal transduction |
GO_0031295 | Biological process | T cell costimulation |
GO_0007163 | Biological process | establishment or maintenance of cell polarity |
GO_0001562 | Biological process | response to protozoan |
GO_0007162 | Biological process | negative regulation of cell adhesion |
GO_0006935 | Biological process | chemotaxis |
GO_0001934 | Biological process | positive regulation of protein phosphorylation |
GO_0006968 | Biological process | cellular defense response |
GO_0050776 | Biological process | regulation of immune response |
GO_0002296 | Biological process | T-helper 1 cell lineage commitment |
GO_0006955 | Biological process | immune response |
GO_0042130 | Biological process | negative regulation of T cell proliferation |
GO_0042742 | Biological process | defense response to bacterium |
GO_0050901 | Biological process | leukocyte tethering or rolling |
GO_0045060 | Biological process | negative thymic T cell selection |
GO_0050688 | Biological process | regulation of defense response to virus |
GO_2000406 | Biological process | positive regulation of T cell migration |
GO_0032760 | Biological process | positive regulation of tumor necrosis factor production |
GO_2000404 | Biological process | regulation of T cell migration |
GO_0007166 | Biological process | cell surface receptor signaling pathway |
GO_0001808 | Biological process | negative regulation of type IV hypersensitivity |
GO_0005902 | Cellular component | microvillus |
GO_0005615 | Cellular component | extracellular space |
GO_0009897 | Cellular component | external side of plasma membrane |
GO_0005886 | Cellular component | plasma membrane |
GO_0016020 | Cellular component | membrane |
GO_0070062 | Cellular component | extracellular exosome |
GO_0009986 | Cellular component | cell surface |
GO_0016605 | Cellular component | PML body |
GO_0005604 | Cellular component | basement membrane |
GO_0001931 | Cellular component | uropod |
GO_0004888 | Molecular function | transmembrane signaling receptor activity |
GO_0031072 | Molecular function | heat shock protein binding |
GO_0030544 | Molecular function | Hsp70 protein binding |
GO_0005515 | Molecular function | protein binding |
Gene name | SPN |
Protein name | Leukosialin (GPL115) (Galactoglycoprotein) (GALGP) (Leukocyte sialoglycoprotein) (Sialophorin) (CD antigen CD43) [Cleaved into: CD43 cytoplasmic tail (CD43-ct) (CD43ct)] Sialophorin |
Synonyms | CD43 |
Description | FUNCTION: Predominant cell surface sialoprotein of leukocytes which regulates multiple T-cell functions, including T-cell activation, proliferation, differentiation, trafficking and migration. Positively regulates T-cell trafficking to lymph-nodes via its association with ERM proteins (EZR, RDX and MSN) (By similarity). Negatively regulates Th2 cell differentiation and predisposes the differentiation of T-cells towards a Th1 lineage commitment. Promotes the expression of IFN-gamma by T-cells during T-cell receptor (TCR) activation of naive cells and induces the expression of IFN-gamma by CD4(+) T-cells and to a lesser extent by CD8(+) T-cells . Plays a role in preparing T-cells for cytokine sensing and differentiation into effector cells by inducing the expression of cytokine receptors IFNGR and IL4R, promoting IFNGR and IL4R signaling and by mediating the clustering of IFNGR with TCR . Acts as a major E-selectin ligand responsible for Th17 cell rolling on activated vasculature and recruitment during inflammation. Mediates Th17 cells, but not Th1 cells, adhesion to E-selectin. Acts as a T-cell counter-receptor for SIGLEC1 (By similarity). .; FUNCTION: [CD43 cytoplasmic tail]: Protects cells from apoptotic signals, promoting cell survival. . |
Accessions | ENST00000652691.1 ENST00000563039.2 ENST00000395389.2 P16150 ENST00000436527.5 C9JUK7 ENST00000360121.4 |