SNRPB2 | OmnibusX

I. Expression across cell types

Name	Number of supported studies	Average coverage
natural killer cell	34 studies	32% ± 9%	Explore
B cell	32 studies	28% ± 10%	Explore
fibroblast	32 studies	31% ± 14%	Explore
CD8-positive, alpha-beta T cell	30 studies	30% ± 11%	Explore
CD4-positive, alpha-beta T cell	29 studies	31% ± 11%	Explore
endothelial cell	28 studies	36% ± 15%	Explore
T cell	27 studies	31% ± 11%	Explore
macrophage	24 studies	28% ± 12%	Explore
pericyte	24 studies	30% ± 11%	Explore
conventional dendritic cell	23 studies	32% ± 16%	Explore
smooth muscle cell	22 studies	31% ± 11%	Explore
classical monocyte	22 studies	27% ± 12%	Explore
non-classical monocyte	21 studies	30% ± 13%	Explore
regulatory T cell	21 studies	31% ± 7%	Explore
plasmacytoid dendritic cell	18 studies	33% ± 13%	Explore
naive B cell	17 studies	24% ± 7%	Explore
mature NK T cell	17 studies	28% ± 7%	Explore
connective tissue cell	17 studies	35% ± 15%	Explore
gamma-delta T cell	17 studies	30% ± 15%	Explore
memory B cell	17 studies	24% ± 7%	Explore
mast cell	16 studies	30% ± 12%	Explore
endothelial cell of lymphatic vessel	15 studies	35% ± 13%	Explore
CD16-positive, CD56-dim natural killer cell, human	15 studies	30% ± 8%	Explore
epithelial cell	15 studies	38% ± 21%	Explore
monocyte	14 studies	31% ± 11%	Explore
basal cell	14 studies	30% ± 15%	Explore
naive thymus-derived CD4-positive, alpha-beta T cell	13 studies	26% ± 7%	Explore
myofibroblast cell	13 studies	33% ± 13%	Explore
dendritic cell	13 studies	35% ± 24%	Explore
plasma cell	12 studies	30% ± 12%	Explore
CD16-negative, CD56-bright natural killer cell, human	12 studies	29% ± 8%	Explore
capillary endothelial cell	12 studies	27% ± 7%	Explore
mucosal invariant T cell	12 studies	25% ± 5%	Explore
CD8-positive, alpha-beta memory T cell	11 studies	30% ± 10%	Explore
naive thymus-derived CD8-positive, alpha-beta T cell	11 studies	29% ± 8%	Explore
vein endothelial cell	11 studies	28% ± 9%	Explore
endothelial cell of vascular tree	11 studies	31% ± 8%	Explore
ciliated cell	11 studies	36% ± 17%	Explore
CD4-positive, alpha-beta memory T cell	10 studies	28% ± 10%	Explore
endothelial cell of artery	10 studies	27% ± 8%	Explore
myeloid cell	10 studies	27% ± 14%	Explore
abnormal cell	9 studies	32% ± 12%	Explore
leukocyte	8 studies	29% ± 9%	Explore
effector memory CD8-positive, alpha-beta T cell	8 studies	30% ± 11%	Explore
progenitor cell	8 studies	40% ± 13%	Explore
neuron	8 studies	39% ± 19%	Explore
plasmablast	7 studies	46% ± 19%	Explore
effector CD8-positive, alpha-beta T cell	7 studies	35% ± 12%	Explore
epithelial cell of proximal tubule	7 studies	38% ± 13%	Explore
T follicular helper cell	7 studies	27% ± 5%	Explore
secretory cell	7 studies	29% ± 15%	Explore
hematopoietic precursor cell	6 studies	38% ± 23%	Explore
effector CD4-positive, alpha-beta T cell	6 studies	34% ± 8%	Explore
kidney loop of Henle epithelial cell	6 studies	23% ± 3%	Explore
enterocyte	6 studies	20% ± 4%	Explore
mesothelial cell	6 studies	41% ± 19%	Explore
precursor B cell	6 studies	37% ± 14%	Explore
innate lymphoid cell	6 studies	31% ± 4%	Explore
effector memory CD4-positive, alpha-beta T cell	6 studies	34% ± 14%	Explore
alveolar macrophage	5 studies	26% ± 8%	Explore
mononuclear phagocyte	5 studies	33% ± 17%	Explore
goblet cell	5 studies	29% ± 15%	Explore
hematopoietic stem cell	5 studies	27% ± 8%	Explore
pro-B cell	5 studies	34% ± 5%	Explore
immature B cell	5 studies	34% ± 16%	Explore
type I pneumocyte	5 studies	29% ± 10%	Explore
type II pneumocyte	5 studies	31% ± 18%	Explore
neutrophil	5 studies	18% ± 1%	Explore
pancreatic A cell	4 studies	39% ± 5%	Explore
exhausted T cell	4 studies	38% ± 11%	Explore
enteroendocrine cell	4 studies	41% ± 13%	Explore
intestinal crypt stem cell	4 studies	24% ± 7%	Explore
erythroblast	4 studies	47% ± 18%	Explore
erythrocyte	4 studies	35% ± 17%	Explore
CD4-positive helper T cell	4 studies	27% ± 9%	Explore
luminal hormone-sensing cell of mammary gland	4 studies	24% ± 3%	Explore
granulocyte	4 studies	33% ± 9%	Explore
GABAergic neuron	4 studies	22% ± 5%	Explore
glutamatergic neuron	4 studies	28% ± 9%	Explore
oligodendrocyte precursor cell	4 studies	31% ± 14%	Explore
T-helper 17 cell	4 studies	38% ± 14%	Explore
type B pancreatic cell	3 studies	40% ± 4%	Explore
glomerular endothelial cell	3 studies	22% ± 6%	Explore
kidney distal convoluted tubule epithelial cell	3 studies	54% ± 20%	Explore
neural crest cell	3 studies	57% ± 4%	Explore
extravillous trophoblast	3 studies	33% ± 13%	Explore
placental villous trophoblast	3 studies	46% ± 17%	Explore
lymphocyte	3 studies	40% ± 13%	Explore
megakaryocyte	3 studies	20% ± 5%	Explore
club cell	3 studies	31% ± 7%	Explore
retina horizontal cell	3 studies	32% ± 20%	Explore
microglial cell	3 studies	28% ± 11%	Explore
Mueller cell	3 studies	25% ± 5%	Explore
germinal center B cell	3 studies	31% ± 2%	Explore
myoepithelial cell	3 studies	28% ± 10%	Explore
pancreatic ductal cell	3 studies	47% ± 3%	Explore
granulocyte monocyte progenitor cell	3 studies	40% ± 25%	Explore
megakaryocyte-erythroid progenitor cell	3 studies	46% ± 24%	Explore
glial cell	3 studies	41% ± 26%	Explore
group 3 innate lymphoid cell	3 studies	40% ± 18%	Explore
transit amplifying cell	3 studies	19% ± 2%	Explore
interneuron	3 studies	22% ± 9%	Explore
T-helper 1 cell	3 studies	37% ± 6%	Explore
effector memory CD8-positive, alpha-beta T cell, terminally differentiated	3 studies	28% ± 6%	Explore
central memory CD4-positive, alpha-beta T cell	3 studies	25% ± 7%	Explore
central memory CD8-positive, alpha-beta T cell	3 studies	22% ± 8%	Explore
double negative thymocyte	3 studies	47% ± 22%	Explore

II. Expression across tissues

Name	Number of supported studies	Average coverage
peripheral blood	18 studies	30% ± 11%	Explore
lung	16 studies	32% ± 14%	Explore
kidney	8 studies	33% ± 10%	Explore
intestine	8 studies	32% ± 14%	Explore
brain	7 studies	24% ± 3%	Explore
liver	6 studies	34% ± 19%	Explore
pancreas	5 studies	34% ± 10%	Explore
bone marrow	5 studies	24% ± 4%	Explore
eye	5 studies	25% ± 10%	Explore
uterus	5 studies	34% ± 15%	Explore
lymph node	5 studies	32% ± 13%	Explore
placenta	4 studies	33% ± 17%	Explore
breast	4 studies	24% ± 2%	Explore
adrenal gland	3 studies	25% ± 3%	Explore
skin	3 studies	19% ± 1%	Explore
thymus	3 studies	53% ± 18%	Explore

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
esophagus	100%	1733.01	1445 / 1445	100%	62.30	183 / 183
kidney	100%	2136.02	89 / 89	100%	56.88	901 / 901
liver	100%	979.35	226 / 226	100%	44.67	406 / 406
ovary	100%	2110.23	180 / 180	100%	82.03	430 / 430
uterus	100%	2077.86	170 / 170	100%	87.27	459 / 459
breast	100%	2091.96	459 / 459	100%	88.74	1117 / 1118
brain	100%	1523.20	2638 / 2642	100%	68.44	705 / 705
thymus	100%	1787.95	653 / 653	100%	71.49	604 / 605
lung	100%	1779.41	577 / 578	100%	70.08	1155 / 1155
bladder	100%	1932.57	21 / 21	100%	80.16	503 / 504
prostate	100%	1494.99	245 / 245	100%	53.55	501 / 502
skin	100%	2014.88	1809 / 1809	100%	100.13	471 / 472
stomach	100%	1510.83	359 / 359	100%	83.23	285 / 286
adrenal gland	100%	1843.92	258 / 258	99%	65.00	228 / 230
intestine	100%	1998.75	966 / 966	99%	82.46	522 / 527
pancreas	98%	816.39	322 / 328	99%	56.05	177 / 178
adipose	100%	2103.48	1204 / 1204	0%	0	0 / 0
blood vessel	100%	2016.74	1335 / 1335	0%	0	0 / 0
lymph node	0%	0	0 / 0	100%	105.43	29 / 29
muscle	100%	1429.45	803 / 803	0%	0	0 / 0
spleen	100%	2240.74	241 / 241	0%	0	0 / 0
tonsil	0%	0	0 / 0	100%	58.18	45 / 45
ureter	0%	0	0 / 0	100%	41.96	1 / 1
eye	0%	0	0 / 0	99%	45.20	79 / 80
heart	98%	1240.14	848 / 861	0%	0	0 / 0
peripheral blood	92%	1650.69	853 / 929	0%	0	0 / 0
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0

III. Associated gene sets

GO_0000398	Biological process	mRNA splicing, via spliceosome
GO_1903241	Biological process	U2-type prespliceosome assembly
GO_0005686	Cellular component	U2 snRNP
GO_0016607	Cellular component	nuclear speck
GO_0001650	Cellular component	fibrillar center
GO_0071013	Cellular component	catalytic step 2 spliceosome
GO_0005654	Cellular component	nucleoplasm
GO_0005685	Cellular component	U1 snRNP
GO_0036464	Cellular component	cytoplasmic ribonucleoprotein granule
GO_0071007	Cellular component	U2-type catalytic step 2 spliceosome
GO_0005681	Cellular component	spliceosomal complex
GO_0071005	Cellular component	U2-type precatalytic spliceosome
GO_0005684	Cellular component	U2-type spliceosomal complex
GO_0005634	Cellular component	nucleus
GO_0030619	Molecular function	U1 snRNA binding
GO_0005515	Molecular function	protein binding

Gene name	SNRPB2
Protein name	U2 small nuclear ribonucleoprotein B'' (U2 snRNP B'') Small nuclear ribonucleoprotein polypeptide B''
Synonyms
Description	FUNCTION: Involved in pre-mRNA splicing as component of the spliceosome . Associated with sn-RNP U2, where it contributes to the binding of stem loop IV of U2 snRNA . .
Accessions	ENST00000246071.8 B5BTZ8 P08579 ENST00000377943.9

SNRPB2 report

I. Expression across cell types

II. Expression across tissues

III. Associated gene sets

IV. Literature review