SCAND1 | OmnibusX

I. Expression across cell types

Name	Number of supported studies	Average coverage
natural killer cell	34 studies	36% ± 12%	Explore
B cell	33 studies	31% ± 12%	Explore
endothelial cell	30 studies	35% ± 15%	Explore
T cell	28 studies	31% ± 11%	Explore
fibroblast	28 studies	29% ± 11%	Explore
CD4-positive, alpha-beta T cell	28 studies	32% ± 10%	Explore
CD8-positive, alpha-beta T cell	28 studies	34% ± 13%	Explore
regulatory T cell	26 studies	38% ± 13%	Explore
macrophage	25 studies	29% ± 10%	Explore
classical monocyte	25 studies	44% ± 16%	Explore
pericyte	24 studies	30% ± 11%	Explore
conventional dendritic cell	23 studies	34% ± 17%	Explore
smooth muscle cell	22 studies	29% ± 9%	Explore
non-classical monocyte	22 studies	40% ± 16%	Explore
memory B cell	18 studies	31% ± 9%	Explore
plasmacytoid dendritic cell	18 studies	40% ± 15%	Explore
monocyte	17 studies	38% ± 11%	Explore
mature NK T cell	17 studies	34% ± 10%	Explore
epithelial cell	17 studies	41% ± 19%	Explore
naive B cell	17 studies	30% ± 9%	Explore
gamma-delta T cell	17 studies	38% ± 16%	Explore
ciliated cell	16 studies	51% ± 18%	Explore
endothelial cell of lymphatic vessel	15 studies	39% ± 10%	Explore
connective tissue cell	15 studies	30% ± 9%	Explore
CD16-negative, CD56-bright natural killer cell, human	14 studies	35% ± 11%	Explore
plasma cell	14 studies	41% ± 16%	Explore
dendritic cell	13 studies	42% ± 23%	Explore
mast cell	13 studies	26% ± 15%	Explore
CD16-positive, CD56-dim natural killer cell, human	13 studies	43% ± 12%	Explore
basal cell	13 studies	36% ± 19%	Explore
naive thymus-derived CD4-positive, alpha-beta T cell	13 studies	31% ± 8%	Explore
myofibroblast cell	13 studies	31% ± 9%	Explore
capillary endothelial cell	12 studies	29% ± 11%	Explore
plasmablast	11 studies	47% ± 23%	Explore
CD8-positive, alpha-beta memory T cell	11 studies	40% ± 15%	Explore
naive thymus-derived CD8-positive, alpha-beta T cell	11 studies	38% ± 9%	Explore
vein endothelial cell	11 studies	27% ± 8%	Explore
mucosal invariant T cell	11 studies	34% ± 10%	Explore
myeloid cell	11 studies	31% ± 15%	Explore
CD4-positive, alpha-beta memory T cell	10 studies	36% ± 12%	Explore
secretory cell	10 studies	37% ± 15%	Explore
abnormal cell	10 studies	39% ± 15%	Explore
endothelial cell of artery	10 studies	28% ± 6%	Explore
effector memory CD8-positive, alpha-beta T cell	9 studies	36% ± 14%	Explore
progenitor cell	9 studies	36% ± 13%	Explore
goblet cell	9 studies	33% ± 16%	Explore
endothelial cell of vascular tree	9 studies	29% ± 7%	Explore
type I pneumocyte	7 studies	33% ± 11%	Explore
club cell	7 studies	36% ± 8%	Explore
effector CD8-positive, alpha-beta T cell	7 studies	35% ± 7%	Explore
T follicular helper cell	7 studies	38% ± 9%	Explore
effector CD4-positive, alpha-beta T cell	6 studies	39% ± 13%	Explore
epithelial cell of proximal tubule	6 studies	43% ± 9%	Explore
neuron	6 studies	45% ± 22%	Explore
enterocyte	6 studies	34% ± 8%	Explore
precursor B cell	6 studies	42% ± 14%	Explore
innate lymphoid cell	6 studies	31% ± 11%	Explore
type II pneumocyte	6 studies	34% ± 13%	Explore
effector memory CD4-positive, alpha-beta T cell	6 studies	38% ± 14%	Explore
alveolar macrophage	5 studies	26% ± 6%	Explore
effector memory CD8-positive, alpha-beta T cell, terminally differentiated	5 studies	29% ± 8%	Explore
hematopoietic precursor cell	5 studies	48% ± 21%	Explore
ionocyte	5 studies	36% ± 12%	Explore
respiratory goblet cell	5 studies	43% ± 21%	Explore
leukocyte	5 studies	33% ± 10%	Explore
kidney loop of Henle epithelial cell	5 studies	36% ± 3%	Explore
enteroendocrine cell	5 studies	46% ± 21%	Explore
mesothelial cell	5 studies	42% ± 19%	Explore
hematopoietic stem cell	5 studies	39% ± 10%	Explore
immature B cell	5 studies	39% ± 17%	Explore
erythrocyte	5 studies	34% ± 17%	Explore
CD4-positive helper T cell	4 studies	26% ± 12%	Explore
central memory CD8-positive, alpha-beta T cell	4 studies	25% ± 8%	Explore
mononuclear phagocyte	4 studies	36% ± 16%	Explore
exhausted T cell	4 studies	51% ± 15%	Explore
kidney distal convoluted tubule epithelial cell	4 studies	46% ± 5%	Explore
retinal ganglion cell	4 studies	61% ± 28%	Explore
pro-B cell	4 studies	45% ± 9%	Explore
brush cell	4 studies	37% ± 6%	Explore
astrocyte	4 studies	29% ± 16%	Explore
intermediate monocyte	4 studies	56% ± 17%	Explore
luminal hormone-sensing cell of mammary gland	4 studies	41% ± 8%	Explore
neutrophil	4 studies	21% ± 5%	Explore
T-helper 17 cell	4 studies	28% ± 7%	Explore
CD4-positive, alpha-beta cytotoxic T cell	3 studies	36% ± 14%	Explore
deuterosomal cell	3 studies	48% ± 3%	Explore
duct epithelial cell	3 studies	33% ± 12%	Explore
precursor cell	3 studies	42% ± 11%	Explore
squamous epithelial cell	3 studies	47% ± 25%	Explore
platelet	3 studies	26% ± 8%	Explore
pancreatic A cell	3 studies	69% ± 16%	Explore
type B pancreatic cell	3 studies	65% ± 17%	Explore
glomerular endothelial cell	3 studies	30% ± 5%	Explore
neural crest cell	3 studies	33% ± 3%	Explore
IgG plasma cell	3 studies	28% ± 15%	Explore
transit amplifying cell	3 studies	19% ± 1%	Explore
erythroblast	3 studies	38% ± 23%	Explore
lymphocyte	3 studies	43% ± 9%	Explore
megakaryocyte	3 studies	32% ± 1%	Explore
neuroendocrine cell	3 studies	56% ± 26%	Explore
retina horizontal cell	3 studies	34% ± 20%	Explore
retinal cone cell	3 studies	58% ± 20%	Explore
retinal rod cell	3 studies	33% ± 13%	Explore
mucus secreting cell	3 studies	41% ± 12%	Explore
serous secreting cell	3 studies	35% ± 9%	Explore
Mueller cell	3 studies	30% ± 10%	Explore
germinal center B cell	3 studies	35% ± 5%	Explore
oligodendrocyte precursor cell	3 studies	35% ± 11%	Explore
granulocyte	3 studies	28% ± 5%	Explore
glial cell	3 studies	36% ± 21%	Explore
hepatocyte	3 studies	47% ± 31%	Explore
group 3 innate lymphoid cell	3 studies	39% ± 14%	Explore
oligodendrocyte	3 studies	25% ± 6%	Explore
T-helper 1 cell	3 studies	42% ± 6%	Explore
central memory CD4-positive, alpha-beta T cell	3 studies	33% ± 12%	Explore
double negative thymocyte	3 studies	54% ± 17%	Explore
progenitor cell of mammary luminal epithelium	3 studies	22% ± 5%	Explore

II. Expression across tissues

Name	Number of supported studies	Average coverage
peripheral blood	18 studies	41% ± 13%	Explore
lung	16 studies	36% ± 14%	Explore
intestine	10 studies	28% ± 12%	Explore
kidney	8 studies	34% ± 7%	Explore
eye	6 studies	29% ± 16%	Explore
lymph node	5 studies	38% ± 8%	Explore
liver	5 studies	34% ± 19%	Explore
uterus	4 studies	40% ± 18%	Explore
breast	4 studies	26% ± 4%	Explore
brain	4 studies	25% ± 6%	Explore
pancreas	3 studies	61% ± 20%	Explore
bone marrow	3 studies	30% ± 10%	Explore
adrenal gland	3 studies	26% ± 9%	Explore

Tissue	GTEx Coverage	GTEx Average TPM	GTEx Number of samples	TCGA Coverage	TCGA Average TPM	TCGA Number of samples
adrenal gland	100%	3370.79	258 / 258	100%	101.30	230 / 230
esophagus	100%	2303.70	1445 / 1445	100%	72.34	183 / 183
ovary	100%	2251.57	180 / 180	100%	134.78	430 / 430
brain	100%	2172.43	2636 / 2642	100%	89.27	705 / 705
thymus	100%	2713.00	652 / 653	100%	99.68	604 / 605
liver	100%	2288.08	226 / 226	100%	86.48	404 / 406
stomach	100%	2027.25	359 / 359	99%	113.05	284 / 286
prostate	100%	3366.16	245 / 245	99%	150.47	498 / 502
uterus	100%	2309.50	170 / 170	99%	97.37	454 / 459
intestine	100%	2377.73	966 / 966	98%	113.68	519 / 527
kidney	100%	3167.69	89 / 89	98%	74.28	885 / 901
bladder	100%	2158.48	21 / 21	98%	120.60	494 / 504
skin	100%	2485.76	1809 / 1809	98%	89.01	462 / 472
lung	100%	2180.59	576 / 578	98%	71.25	1129 / 1155
breast	100%	2674.11	459 / 459	95%	74.96	1065 / 1118
pancreas	100%	1612.09	328 / 328	95%	82.78	169 / 178
eye	0%	0	0 / 0	100%	140.59	80 / 80
lymph node	0%	0	0 / 0	100%	144.76	29 / 29
spleen	100%	3077.05	241 / 241	0%	0	0 / 0
ureter	0%	0	0 / 0	100%	276.15	1 / 1
adipose	100%	2592.95	1203 / 1204	0%	0	0 / 0
blood vessel	100%	2382.95	1330 / 1335	0%	0	0 / 0
muscle	99%	1936.06	795 / 803	0%	0	0 / 0
heart	99%	1665.65	851 / 861	0%	0	0 / 0
peripheral blood	99%	2158.46	917 / 929	0%	0	0 / 0
tonsil	0%	0	0 / 0	98%	72.14	44 / 45
abdomen	0%	0	0 / 0	0%	0	0 / 0
bone marrow	0%	0	0 / 0	0%	0	0 / 0
diaphragm	0%	0	0 / 0	0%	0	0 / 0
gingiva	0%	0	0 / 0	0%	0	0 / 0
nasal cavity	0%	0	0 / 0	0%	0	0 / 0
nasopharynx	0%	0	0 / 0	0%	0	0 / 0
nose	0%	0	0 / 0	0%	0	0 / 0
placenta	0%	0	0 / 0	0%	0	0 / 0
spinal column	0%	0	0 / 0	0%	0	0 / 0

GO_0045893	Biological process	positive regulation of DNA-templated transcription
GO_0005634	Cellular component	nucleus
GO_0005515	Molecular function	protein binding

Gene name	SCAND1
Protein name	SCAN domain-containing protein 1
Synonyms	SDP1
Description	FUNCTION: May regulate transcriptional activity.
Accessions	ENST00000305978.7 ENST00000615116.1 P57086 ENST00000373991.3

SCAND1 report

I. Expression across cell types

II. Expression across tissues

III. Associated gene sets

IV. Literature review